Additional file 1: Table S1. of Mutations of CREBBP and SOCS1 are independent prognostic factors in diffuse large B cell lymphoma: mutational analysis of the SAKK 38/07 prospective clinical trial cohort

Darius Juskevicius (3843418)
David Jucker (3843421)
Dirk Klingbiel (725628)
Christoph Mamot (842822)
Stephan Dirnhofer (72499)
Alexandar Tzankov (72495)

Publication date

March 2017

DOI

10.6084/m9.figshare.c.3719626_d1.v1

Abstract

Statistics of high-throughput sequencing and variant calling. Table S2. Somatic mutations detected by high-throughput sequencing in 76 cases of primary DLBCL. (XLSX 384Â kb

Extracted data

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Data Protection

Additional file 1: Table S1. of Mutations of CREBBP and SOCS1 are independent prognostic factors in diffuse large B cell lymphoma: mutational analysis of the SAKK 38/07 prospective clinical trial cohort

Darius Juskevicius (3843418)
David Jucker (3843421)
Dirk Klingbiel (725628)
Christoph Mamot (842822)
Stephan Dirnhofer (72499)
Alexandar Tzankov (72495)

Open link

Publication date

March 2017

DOI

10.6084/m9.figshare.c.3719626_d1.v1

Abstract

Statistics of high-throughput sequencing and variant calling. Table S2. Somatic mutations detected by high-throughput sequencing in 76 cases of primary DLBCL. (XLSX 384Â kb

Extracted data

Dandan Yi (6197657)
Lei Xu (78676)
Jiaqi Luo (4580191)
Xiaobin You (6197660)
Tao Huang (110613)
Yi Zi (6197663)
Xiaoting Li (348766)
Ru Wang (282586)
Zaixuan Zhong (4431553)
Xiaoqiao Tang (2158969)
Ang Li (110963)
Yujian Shi (108950)
Jianmei Rao (6197666)
Yifen Zhang (3949688)
Jianfeng Sang (6197669)

January 2019

Table S2. Pathogenic and likely pathogenic mutations identified in the studied cohort. Annotations a...

Additional file 3: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan Bièche (3492)
Florence Lerebours (303656)
Céline Callens (424227)

August 2018

Figure S1. Comparison of somatic mutation frequency between IBC and non-IBC in four subgroups. (a) T...

Additional file 1: of Mutational profiling of acute lymphoblastic leukemia with testicular relapse

Ling-Wen Ding (3811114)
Qiao-Yang Sun (3811123)
Anand Mayakonda (3811108)
Kar-Tong Tan (3811105)
Wenwen Chien (3811111)
De-Chen Lin (3811117)
Yan-Yi Jiang (648365)
Liang Xu (102656)
Manoj Garg (494661)
Zhen-Tang Lao (3811120)
Michael Lill (3811102)
Henry Yang (204980)
Allen Yeoh (3556511)
H. Koeffler (3586466)

March 2017

Table S1. Variant allele frequency (VAF) of somatic mutations in both cases. (DOCX 24Â kb

Additional file 3: of Tumor genomic alterations in severe-combined immunodeficiency bare-lymphocyte syndrome genes are associated with high mutational burden and disproportional neo-antigen rates

Yu Wang (12152)
Douglas Johnson (302588)
Steve Lu (6678503)
Luis Diaz (6323738)
Yaomin Xu (221417)
Justin Balko (4424944)

May 2019

Table S1. Mutation profiles of BLS genes in colorectal, melanoma, gastric, and uterine cancers. Tabl...

Additional file 1: Table S1a. of PIK3CA mutations are common in lobular carcinoma in situ, but are not a biomarker of progression

Vandna Shah (3661897)
Salpie Nowinski (553690)
Dina Levi (3661888)
Irek Shinomiya (3661894)
Narda Kebaier Ep Chaabouni (3661885)
Cheryl Gillett (553699)
Anita Grigoriadis (41195)
Trevor Graham (3661891)
Rebecca Roylance (553687)
Michael Simpson (2990385)
Sarah Pinder (553692)
Elinor Sawyer (146459)

January 2017

Clinico-pathological features of the discovery set - pure LCIS. Table S1b. Clinico-pathological feat...

Mutations of CREBBP and SOCS1 are independent prognostic factors in diffuse large B cell lymphoma: mutational analysis of the SAKK 38/07 prospective clinical trial cohort

Darius Juskevicius
David Jucker
Dirk Klingbiel
Christoph Mamot
Stephan Dirnhofer
Alexandar Tzankov

March 2017

Abstract Background/purpose Recently, the mutational background of diffuse large B cell lymphoma (DL...

Additional file 1: Table S1. of Localized primary gastrointestinal diffuse large B cell lymphoma received a surgical approach: an analysis of prognostic factors and comparison of staging systems in 101 patients from a single institution

Shengting Zhang (3493445)
Li Wang (15202)
Dong Yu (153717)
Yang Shen (66591)
Shu Cheng (807879)
Li Zhang (8200)
Ying Qian (482851)
Zhixiang Shen (3493448)
Qinyu Li (3493451)
Weili Zhao (1694086)

August 2015

Clinical characteristics and survival rate of patients with localized PG-DLBCL. It shows the clinica...

Additional file 1: of The clonal evolution of two distinct T315I-positive BCR-ABL1 subclones in a Philadelphia-positive acute lymphoblastic leukemia failing multiple lines of therapy: a case report

Caterina De Benedittis (765725)
Cristina Papayannidis (148445)
Claudia Venturi (3512696)
Maria Abbenante (3512687)
Stefania Paolini (196601)
Sarah Parisi (4334455)
Chiara Sartor (4334452)
Michele Cavo (463532)
Giovanni Martinelli (148520)
Simona Soverini (148501)

August 2017

Comparison between mutations detected by conventional Sanger sequencing and Deep sequencing and esti...

Additional file 1: of Genomic characterization of chronic lymphocytic leukemia (CLL) in radiation-exposed Chornobyl cleanup workers

Juhi Ojha (355965)
Iryna Dyagil (5167895)
Stuart Finch (5167916)
Robert Reiss (5167904)
Adam de Smith (5167886)
Semira Gonseth (665194)
Mi Zhou (9884)
Helen Hansen (449559)
Amy Sherborne (5167901)
Jean Nakamura (5167913)
Paige Bracci (709480)
Nataliya Gudzenko (5167898)
Maureen Hatch (18343)
Nataliya Babkina (5167907)
Mark Little (649058)
Vadim Chumak (5167892)
Kyle Walsh (5167889)
Dimitry Bazyka (5167910)
Joseph Wiemels (243305)
Lydia Zablotska (5167919)

May 2018

Table S1. List of target genes sequenced by targeted deep sequencing. Table S2. Mutations in Exposed...

Additional file 1: Table S1. of Clinical and prognostic analysis of 78 patients with human immuno-deficiency virus associated non-Hodgkinâs lymphoma in Chinese population

Yang Shen (66591)
Renfang Zhang (198380)
Li Liu (75607)
Yinzhong Shen (198394)
Wei Song (30780)
Tangkai Qi (198397)
Yang Tang (152970)
Zhenyan Wang (460310)
Liqian Guan (3690184)
Hongzhou Lu (198400)

January 2017

Regimens of chemotherapy. Table S2. Univariate analysis of the factors affecting CR in DLBCL and BL ...

Additional file 1: of STAT3 antisense oligonucleotide AZD9150 in a subset of patients with heavily pretreated lymphoma: results of a phase 1b trial

Matthew Reilley (5984306)
Patricia McCoon (5984309)
Carl Cook (5984312)
Paul Lyne (1533481)
Razelle Kurzrock (160706)
Youngsoo Kim (119651)
Richard Woessner (1860436)
Anas Younes (5984315)
John Nemunaitis (144327)
Nathan Fowler (5984318)
Michael Curran (1299420)
Qinying Liu (5984321)
Tianyuan Zhou (5984324)
Joanna Schmidt (431196)
Minji Jo (774843)
Samantha Lee (5753963)
Mason Yamashita (5984327)
Steven Hughes (173393)
Luis Fayad (440925)
Sarina Piha-Paul (5984330)
Murali Nadella (5984333)
Xiaokun Xiao (5984336)
Jeff Hsu (774842)
Alexey Revenko (5984339)
Brett Monia (4766643)
A. MacLeod (5984342)
David Hong (341495)

November 2018

Table S1. Genomic analysis of pre-treatment tumor in complete responder with DLBCL. Table S2. Periph...

Additional file 1: of LUADpp: an effective prediction model on prognosis of lung adenocarcinomas based on somatic mutational features

Jiaxian Yu (6500489)
Yueming Hu (3387086)
Yafei Xu (2515528)
Jue Wang (58890)
Jiajie Kuang (6500492)
Wei Zhang (405)
Jianlin Shao (373827)
Dianjing Guo (143463)
Yejun Wang (143461)

March 2019

Table S1. 3-year survival data and classification. Table S2. Comparison of gene somatic mutation rat...

Additional file 1: of Tumor genomic alterations in severe-combined immunodeficiency bare-lymphocyte syndrome genes are associated with high mutational burden and disproportional neo-antigen rates

Yu Wang (12152)
Douglas Johnson (302588)
Steve Lu (6678503)
Luis Diaz (6323738)
Yaomin Xu (221417)
Justin Balko (4424944)

May 2019

Figure S1. Rates and types of BLS alterations across human tumor datasets. A) cBioportal was utilize...

Additional file 1: Table S1. of Circulating mutational portrait of cancer: manifestation of aggressive clonal events in both early and late stages

Meng Yang (162251)
Umit Topaloglu (626154)
W. Petty (4004927)
Matthew Pagni (4004912)
Kristie Foley (4004936)
Stefan Grant (4004939)
Mac Robinson (4004903)
Rhonda Bitting (4004951)
Alexandra Thomas (4004906)
Angela Alistar (3216504)
Rodwige Desnoyers (4004924)
Michael Goodman (37506)
Carol Albright (4004930)
Mercedes Porosnicu (4004921)
Mihaela Vatca (4004933)
Shadi Qasem (4004945)
Barry DeYoung (4004918)
Ville Kytola (4004942)
Matti Nykter (21557)
Kexin Chen (181385)
Edward Levine (4004909)
Edgar Staren (4004915)
Ralph DâAgostino (4004897)
Robin Petro (4004948)
William Blackstock (289137)
Bayard Powell (4004954)
Edward Abraham (322531)
Boris Pasche (4004900)
Wei Zhang (405)

May 2017

Clinical and treatment characteristics of the 18 cases with no ctDNA alterations detected. Table S2....

Additional file 2: of Germline TP53 and MSH6 mutations implicated in sporadic triple-negative breast cancer (TNBC): a preliminary study

Dandan Yi (6197657)
Lei Xu (78676)
Jiaqi Luo (4580191)
Xiaobin You (6197660)
Tao Huang (110613)
Yi Zi (6197663)
Xiaoting Li (348766)
Ru Wang (282586)
Zaixuan Zhong (4431553)
Xiaoqiao Tang (2158969)
Ang Li (110963)
Yujian Shi (108950)
Jianmei Rao (6197666)
Yifen Zhang (3949688)
Jianfeng Sang (6197669)

January 2019

Table S2. Pathogenic and likely pathogenic mutations identified in the studied cohort. Annotations a...

Additional file 3: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan Bièche (3492)
Florence Lerebours (303656)
Céline Callens (424227)

August 2018

Figure S1. Comparison of somatic mutation frequency between IBC and non-IBC in four subgroups. (a) T...

Additional file 1: of Mutational profiling of acute lymphoblastic leukemia with testicular relapse

Ling-Wen Ding (3811114)
Qiao-Yang Sun (3811123)
Anand Mayakonda (3811108)
Kar-Tong Tan (3811105)
Wenwen Chien (3811111)
De-Chen Lin (3811117)
Yan-Yi Jiang (648365)
Liang Xu (102656)
Manoj Garg (494661)
Zhen-Tang Lao (3811120)
Michael Lill (3811102)
Henry Yang (204980)
Allen Yeoh (3556511)
H. Koeffler (3586466)

March 2017

Table S1. Variant allele frequency (VAF) of somatic mutations in both cases. (DOCX 24Â kb

Additional file 3: of Tumor genomic alterations in severe-combined immunodeficiency bare-lymphocyte syndrome genes are associated with high mutational burden and disproportional neo-antigen rates

Yu Wang (12152)
Douglas Johnson (302588)
Steve Lu (6678503)
Luis Diaz (6323738)
Yaomin Xu (221417)
Justin Balko (4424944)

May 2019

Table S1. Mutation profiles of BLS genes in colorectal, melanoma, gastric, and uterine cancers. Tabl...

Additional file 1: Table S1a. of PIK3CA mutations are common in lobular carcinoma in situ, but are not a biomarker of progression

Vandna Shah (3661897)
Salpie Nowinski (553690)
Dina Levi (3661888)
Irek Shinomiya (3661894)
Narda Kebaier Ep Chaabouni (3661885)
Cheryl Gillett (553699)
Anita Grigoriadis (41195)
Trevor Graham (3661891)
Rebecca Roylance (553687)
Michael Simpson (2990385)
Sarah Pinder (553692)
Elinor Sawyer (146459)

January 2017

Clinico-pathological features of the discovery set - pure LCIS. Table S1b. Clinico-pathological feat...

Shengting Zhang (3493445)
Li Wang (15202)
Dong Yu (153717)
Yang Shen (66591)
Shu Cheng (807879)
Li Zhang (8200)
Ying Qian (482851)
Zhixiang Shen (3493448)
Qinyu Li (3493451)
Weili Zhao (1694086)

August 2015

Clinical characteristics and survival rate of patients with localized PG-DLBCL. It shows the clinica...

Additional file 1: of The clonal evolution of two distinct T315I-positive BCR-ABL1 subclones in a Philadelphia-positive acute lymphoblastic leukemia failing multiple lines of therapy: a case report

Caterina De Benedittis (765725)
Cristina Papayannidis (148445)
Claudia Venturi (3512696)
Maria Abbenante (3512687)
Stefania Paolini (196601)
Sarah Parisi (4334455)
Chiara Sartor (4334452)
Michele Cavo (463532)
Giovanni Martinelli (148520)
Simona Soverini (148501)

August 2017

Comparison between mutations detected by conventional Sanger sequencing and Deep sequencing and esti...

Additional file 1: of Genomic characterization of chronic lymphocytic leukemia (CLL) in radiation-exposed Chornobyl cleanup workers

Juhi Ojha (355965)
Iryna Dyagil (5167895)
Stuart Finch (5167916)
Robert Reiss (5167904)
Adam de Smith (5167886)
Semira Gonseth (665194)
Mi Zhou (9884)
Helen Hansen (449559)
Amy Sherborne (5167901)
Jean Nakamura (5167913)
Paige Bracci (709480)
Nataliya Gudzenko (5167898)
Maureen Hatch (18343)
Nataliya Babkina (5167907)
Mark Little (649058)
Vadim Chumak (5167892)
Kyle Walsh (5167889)
Dimitry Bazyka (5167910)
Joseph Wiemels (243305)
Lydia Zablotska (5167919)

May 2018

Table S1. List of target genes sequenced by targeted deep sequencing. Table S2. Mutations in Exposed...

Additional file 1: Table S1. of Clinical and prognostic analysis of 78 patients with human immuno-deficiency virus associated non-Hodgkinâs lymphoma in Chinese population

Yang Shen (66591)
Renfang Zhang (198380)
Li Liu (75607)
Yinzhong Shen (198394)
Wei Song (30780)
Tangkai Qi (198397)
Yang Tang (152970)
Zhenyan Wang (460310)
Liqian Guan (3690184)
Hongzhou Lu (198400)

January 2017

Regimens of chemotherapy. Table S2. Univariate analysis of the factors affecting CR in DLBCL and BL ...

Additional file 1: of STAT3 antisense oligonucleotide AZD9150 in a subset of patients with heavily pretreated lymphoma: results of a phase 1b trial

Matthew Reilley (5984306)
Patricia McCoon (5984309)
Carl Cook (5984312)
Paul Lyne (1533481)
Razelle Kurzrock (160706)
Youngsoo Kim (119651)
Richard Woessner (1860436)
Anas Younes (5984315)
John Nemunaitis (144327)
Nathan Fowler (5984318)
Michael Curran (1299420)
Qinying Liu (5984321)
Tianyuan Zhou (5984324)
Joanna Schmidt (431196)
Minji Jo (774843)
Samantha Lee (5753963)
Mason Yamashita (5984327)
Steven Hughes (173393)
Luis Fayad (440925)
Sarina Piha-Paul (5984330)
Murali Nadella (5984333)
Xiaokun Xiao (5984336)
Jeff Hsu (774842)
Alexey Revenko (5984339)
Brett Monia (4766643)
A. MacLeod (5984342)
David Hong (341495)

November 2018

Table S1. Genomic analysis of pre-treatment tumor in complete responder with DLBCL. Table S2. Periph...

Additional file 1: of LUADpp: an effective prediction model on prognosis of lung adenocarcinomas based on somatic mutational features

Jiaxian Yu (6500489)
Yueming Hu (3387086)
Yafei Xu (2515528)
Jue Wang (58890)
Jiajie Kuang (6500492)
Wei Zhang (405)
Jianlin Shao (373827)
Dianjing Guo (143463)
Yejun Wang (143461)

March 2019

Table S1. 3-year survival data and classification. Table S2. Comparison of gene somatic mutation rat...

Additional file 1: of Tumor genomic alterations in severe-combined immunodeficiency bare-lymphocyte syndrome genes are associated with high mutational burden and disproportional neo-antigen rates

Yu Wang (12152)
Douglas Johnson (302588)
Steve Lu (6678503)
Luis Diaz (6323738)
Yaomin Xu (221417)
Justin Balko (4424944)

May 2019

Figure S1. Rates and types of BLS alterations across human tumor datasets. A) cBioportal was utilize...

Additional file 1: Table S1. of Circulating mutational portrait of cancer: manifestation of aggressive clonal events in both early and late stages

Meng Yang (162251)
Umit Topaloglu (626154)
W. Petty (4004927)
Matthew Pagni (4004912)
Kristie Foley (4004936)
Stefan Grant (4004939)
Mac Robinson (4004903)
Rhonda Bitting (4004951)
Alexandra Thomas (4004906)
Angela Alistar (3216504)
Rodwige Desnoyers (4004924)
Michael Goodman (37506)
Carol Albright (4004930)
Mercedes Porosnicu (4004921)
Mihaela Vatca (4004933)
Shadi Qasem (4004945)
Barry DeYoung (4004918)
Ville Kytola (4004942)
Matti Nykter (21557)
Kexin Chen (181385)
Edward Levine (4004909)
Edgar Staren (4004915)
Ralph DâAgostino (4004897)
Robin Petro (4004948)
William Blackstock (289137)
Bayard Powell (4004954)
Edward Abraham (322531)
Boris Pasche (4004900)
Wei Zhang (405)

May 2017

Clinical and treatment characteristics of the 18 cases with no ctDNA alterations detected. Table S2....

Additional file 2: of Germline TP53 and MSH6 mutations implicated in sporadic triple-negative breast cancer (TNBC): a preliminary study

Dandan Yi (6197657)
Lei Xu (78676)
Jiaqi Luo (4580191)
Xiaobin You (6197660)
Tao Huang (110613)
Yi Zi (6197663)
Xiaoting Li (348766)
Ru Wang (282586)
Zaixuan Zhong (4431553)
Xiaoqiao Tang (2158969)
Ang Li (110963)
Yujian Shi (108950)
Jianmei Rao (6197666)
Yifen Zhang (3949688)
Jianfeng Sang (6197669)

January 2019

Table S2. Pathogenic and likely pathogenic mutations identified in the studied cohort. Annotations a...

Additional file 3: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan Bièche (3492)
Florence Lerebours (303656)
Céline Callens (424227)

August 2018

Figure S1. Comparison of somatic mutation frequency between IBC and non-IBC in four subgroups. (a) T...

Additional file 1: of Mutational profiling of acute lymphoblastic leukemia with testicular relapse

Ling-Wen Ding (3811114)
Qiao-Yang Sun (3811123)
Anand Mayakonda (3811108)
Kar-Tong Tan (3811105)
Wenwen Chien (3811111)
De-Chen Lin (3811117)
Yan-Yi Jiang (648365)
Liang Xu (102656)
Manoj Garg (494661)
Zhen-Tang Lao (3811120)
Michael Lill (3811102)
Henry Yang (204980)
Allen Yeoh (3556511)
H. Koeffler (3586466)

March 2017

Table S1. Variant allele frequency (VAF) of somatic mutations in both cases. (DOCX 24Â kb

Additional file 1: Table S1. of Mutations of CREBBP and SOCS1 are independent prognostic factors in diffuse large B cell lymphoma: mutational analysis of the SAKK 38/07 prospective clinical trial cohort

Abstract

Extracted data

Additional file 1: Table S1. of Mutations of CREBBP and SOCS1 are independent prognostic factors in diffuse large B cell lymphoma: mutational analysis of the SAKK 38/07 prospective clinical trial cohort

Abstract

Extracted data

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