Maximum conditional probability of cluster membership assigned by coexpression clustering using Poisson mixture models. A, Achimenes cettoana; B, A. erecta; C, A. misera; D, A. patens. (PDF 1176 kb
Figure S2. WGCNA of DEGs in different stages. (A) Hierarchical cluster tree showing coexpression mod...
PCoA analysis of the 95 samples reveals the outgroup M. discoidea to be clearly distinct from M. rec...
Figure S1. Characteristics of homology search of Illumina sequences against the NR database. (DOC 50...
Detailed sequencing and assembly statistics. A. Trinity assembly. B. Velvet and Oases assemblies. C....
Neighbor-joining tree of R2R3-Mybs in Achimenes. Putative orthologs involved in anthocyanin and caro...
Number of contigs detected as rRNAs and tRNAs in each transcriptome. (XLSX 33 kb
Significantly enriched Gene Ontology terms for sequences that were unassigned during orthogroup clas...
Significantly enriched Gene Ontology terms for sequences in the “Core” transcriptome after orthogrou...
Figure S2. Phylogenetic clustering of the four species based on the 4447 Rosaceae-common transcripts...
Heatmap showing differential expression of transcripts between half, mid, and mature stages of devel...
Differentially expressed transcripts from within and between taxa comparisons, with associated annot...
Phylogenetic information for each taxon, including number of nuclear and plastid genes, total bp for...
Table S4. KEGG and GO clustering information of 4447 Rosaceae-common genes. (XLSX 274 kb
Figure S1. A phylogenetic tree generated on the basis of a plastid marker trnL-F in 57 Pelargonium s...
Figure S3. Clustered heat map of expression for the nine selected Rosacaeae-common transcripts. Red ...
Figure S2. WGCNA of DEGs in different stages. (A) Hierarchical cluster tree showing coexpression mod...
PCoA analysis of the 95 samples reveals the outgroup M. discoidea to be clearly distinct from M. rec...
Figure S1. Characteristics of homology search of Illumina sequences against the NR database. (DOC 50...
Detailed sequencing and assembly statistics. A. Trinity assembly. B. Velvet and Oases assemblies. C....
Neighbor-joining tree of R2R3-Mybs in Achimenes. Putative orthologs involved in anthocyanin and caro...
Number of contigs detected as rRNAs and tRNAs in each transcriptome. (XLSX 33 kb
Significantly enriched Gene Ontology terms for sequences that were unassigned during orthogroup clas...
Significantly enriched Gene Ontology terms for sequences in the “Core” transcriptome after orthogrou...
Figure S2. Phylogenetic clustering of the four species based on the 4447 Rosaceae-common transcripts...
Heatmap showing differential expression of transcripts between half, mid, and mature stages of devel...
Differentially expressed transcripts from within and between taxa comparisons, with associated annot...
Phylogenetic information for each taxon, including number of nuclear and plastid genes, total bp for...
Table S4. KEGG and GO clustering information of 4447 Rosaceae-common genes. (XLSX 274 kb
Figure S1. A phylogenetic tree generated on the basis of a plastid marker trnL-F in 57 Pelargonium s...
Figure S3. Clustered heat map of expression for the nine selected Rosacaeae-common transcripts. Red ...
Figure S2. WGCNA of DEGs in different stages. (A) Hierarchical cluster tree showing coexpression mod...
PCoA analysis of the 95 samples reveals the outgroup M. discoidea to be clearly distinct from M. rec...
Figure S1. Characteristics of homology search of Illumina sequences against the NR database. (DOC 50...
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