Additional file 6: Table S3. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

Identification of New Resistance Loci Against Sheath Blight Disease in Rice Through Genome-Wide Association Study

Zongxiang Chen
Zhiming Feng
Houxiang Kang
Jianhua Zhao
Tianxiao Chen
Qianqian Li
Hongbing Gong
Yafang Zhang
Xijun Chen
Xuebiao Pan
Wende Liu
Guoliang Wang
Shimin Zuo

January 2019

Sheath blight (SB) caused by the soil borne pathogen Rhizoctonia solani is one of the most serious g...

Additional file 4: Figure S3. of Identification of bakanae disease resistance loci in japonica rice through genome wide association study

Andrea Volante (141325)
Alessandro Tondelli (3167490)
Maria Aragona (4098790)
Maria Valente (4098793)
Chiara Biselli (114669)
Francesca Desiderio (2588137)
Paolo Bagnaresi (84939)
Slavica Matic (4098787)
Maria Gullino (3579608)
Alessandro Infantino (4098784)
Davide Spadaro (1525594)
Giampiero ValĂ¨ (3486386)

June 2017

Details of the two QTL (on chromosomes Os1 and Os4) associated to bakanae disease resistance in the ...

Additional file 1: Table S1. of Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maize

Junqiang Ding (819208)
Farhan Ali (109365)
Gengshen Chen (821113)
Huihui Li (227521)
George Mahuku (3554045)
Ning Yang (114965)
Luis Narro (3554039)
Cosmos Magorokosho (3554048)
Dan Makumbi (3554042)
Jianbing Yan (109373)

August 2015

The list of the lines and their phenotypic evaluation to NCLB in the association panel. (ODS 58 kb

Additional file 12: Table S6. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

Christine Dilla-Ermita (3848641)
Erwin Tandayu (3848626)
Venice Juanillas (3848653)
Jeffrey Detras (3848632)
Dennis Lozada (3848650)
Maria Dwiyanti (3848629)
Casiana Vera Cruz (416308)
Edwige Mbanjo (3848644)
Edna Ardales (3848638)
Maria Diaz (3848635)
Merlyn Mendioro (3848647)
Michael Thomson (376401)
Tobias Kretzschmar (732027)

March 2017

Most significant haplotypes associated with resistance to nine Xoo strains. (XLSX 12 kb

Additional file 11: Table S5. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

Christine Dilla-Ermita (3848641)
Erwin Tandayu (3848626)
Venice Juanillas (3848653)
Jeffrey Detras (3848632)
Dennis Lozada (3848650)
Maria Dwiyanti (3848629)
Casiana Vera Cruz (416308)
Edwige Mbanjo (3848644)
Edna Ardales (3848638)
Maria Diaz (3848635)
Merlyn Mendioro (3848647)
Michael Thomson (376401)
Tobias Kretzschmar (732027)

March 2017

Comparison of allele frequency of SNPs overlapping/flanking Xa genes between GWAS 198 indica genotyp...

Additional file 2: Figure S1. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

Christine Dilla-Ermita (3848641)
Erwin Tandayu (3848626)
Venice Juanillas (3848653)
Jeffrey Detras (3848632)
Dennis Lozada (3848650)
Maria Dwiyanti (3848629)
Casiana Vera Cruz (416308)
Edwige Mbanjo (3848644)
Edna Ardales (3848638)
Maria Diaz (3848635)
Merlyn Mendioro (3848647)
Michael Thomson (376401)
Tobias Kretzschmar (732027)

March 2017

Phylogenetic and population structure of the 285 diverse panel. a) Radial tree of 285 diverse germpl...

Additional file 4: Figure S3. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

Christine Dilla-Ermita (3848641)
Erwin Tandayu (3848626)
Venice Juanillas (3848653)
Jeffrey Detras (3848632)
Dennis Lozada (3848650)
Maria Dwiyanti (3848629)
Casiana Vera Cruz (416308)
Edwige Mbanjo (3848644)
Edna Ardales (3848638)
Maria Diaz (3848635)
Merlyn Mendioro (3848647)
Michael Thomson (376401)
Tobias Kretzschmar (732027)

March 2017

Genome-wide association analysis of bacterial blight resistance to nine Xoo strains in 198 indica ge...

Additional file 3: Figure S2. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

Christine Dilla-Ermita (3848641)
Erwin Tandayu (3848626)
Venice Juanillas (3848653)
Jeffrey Detras (3848632)
Dennis Lozada (3848650)
Maria Dwiyanti (3848629)
Casiana Vera Cruz (416308)
Edwige Mbanjo (3848644)
Edna Ardales (3848638)
Maria Diaz (3848635)
Merlyn Mendioro (3848647)
Michael Thomson (376401)
Tobias Kretzschmar (732027)

March 2017

Genome-wide association analysis of bacterial blight resistance to nine Xoo strains in 248 genotypes...

Genome-wide association analysis tracks bacterial leaf blight resistance loci in rice diverse germplasm

Dilla-Ermita, Christine J
Tandayu, Erwin
Juanillas, Venice Margarette
Detras, Jeffrey
Lozada, Dennis Nicuh
Dwiyanti, Marie Stefanie
Cruz, Casiana Vera
Mbanjo, Edwige Gaby Nkouaya
Ardales, Edna
Diaz, Maria Genaleen
Mendioro, Merlyn
Thomson, Michael J
Kretzschmar, Tobias

January 2017

Background: A range of resistance loci against different races of Xanthomonas oryzae pv. oryzae (Xoo...

Additional file 3: Table S1. of Identification of bakanae disease resistance loci in japonica rice through genome wide association study

Andrea Volante (141325)
Alessandro Tondelli (3167490)
Maria Aragona (4098790)
Maria Valente (4098793)
Chiara Biselli (114669)
Francesca Desiderio (2588137)
Paolo Bagnaresi (84939)
Slavica Matic (4098787)
Maria Gullino (3579608)
Alessandro Infantino (4098784)
Davide Spadaro (1525594)
Giampiero ValĂ¨ (3486386)

June 2017

Genetic diversity (A), Genetic divergence (FST) (B) and marker density (C) estimates computed for th...

Additional file 9: Table S4. of Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maize

Junqiang Ding (819208)
Farhan Ali (109365)
Gengshen Chen (821113)
Huihui Li (227521)
George Mahuku (3554045)
Ning Yang (114965)
Luis Narro (3554039)
Cosmos Magorokosho (3554048)
Dan Makumbi (3554042)
Jianbing Yan (109373)

August 2015

SNP loci found to be associated with resistance to NCLB by GWAS using Anderson-Darling test. For the...

Additional file 3: Table S3. of Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maize

Junqiang Ding (819208)
Farhan Ali (109365)
Gengshen Chen (821113)
Huihui Li (227521)
George Mahuku (3554045)
Ning Yang (114965)
Luis Narro (3554039)
Cosmos Magorokosho (3554048)
Dan Makumbi (3554042)
Jianbing Yan (109373)

August 2015

The proportion of variance explained by ten groups of principal component analyses in association pa...

Additional file 7: Table S2. of Identification of bakanae disease resistance loci in japonica rice through genome wide association study

Andrea Volante (141325)
Alessandro Tondelli (3167490)
Maria Aragona (4098790)
Maria Valente (4098793)
Chiara Biselli (114669)
Francesca Desiderio (2588137)
Paolo Bagnaresi (84939)
Slavica Matic (4098787)
Maria Gullino (3579608)
Alessandro Infantino (4098784)
Davide Spadaro (1525594)
Giampiero ValĂ¨ (3486386)

June 2017

List of candidate genes, functionally annotated, selected on the base of the FDR value. (XLSX 14Â kb

Additional file 6: Figure S3. of Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maize

Junqiang Ding (819208)
Farhan Ali (109365)
Gengshen Chen (821113)
Huihui Li (227521)
George Mahuku (3554045)
Ning Yang (114965)
Luis Narro (3554039)
Cosmos Magorokosho (3554048)
Dan Makumbi (3554042)
Jianbing Yan (109373)

August 2015

Manhattan plot for Mean Rating in sub-group 1, 2 and 3, based on Anderson-Darling test. (DOC 64 kb

Preliminary genome-wide association mapping of rice bacterial leaf blight resistance loci using major Korean races of Xoo (\u27Xanthomonas oryzae\u27)

Ali, Asjad
Yoon-Hyun, Do
Noh, Tae-Hwan
Choi, Yu-Mi
Lee, Sukyeung
Oh, Sejong
Lee, Myung-Chul

January 2017

Bacterial leaf blight (BLB), caused by \u27X. oryzae pv. oryzae\u27 (Xoo), is one of the most destru...

Identification of New Resistance Loci Against Sheath Blight Disease in Rice Through Genome-Wide Association Study

Zongxiang Chen
Zhiming Feng
Houxiang Kang
Jianhua Zhao
Tianxiao Chen
Qianqian Li
Hongbing Gong
Yafang Zhang
Xijun Chen
Xuebiao Pan
Wende Liu
Guoliang Wang
Shimin Zuo

January 2019

Sheath blight (SB) caused by the soil borne pathogen Rhizoctonia solani is one of the most serious g...

Additional file 4: Figure S3. of Identification of bakanae disease resistance loci in japonica rice through genome wide association study

Andrea Volante (141325)
Alessandro Tondelli (3167490)
Maria Aragona (4098790)
Maria Valente (4098793)
Chiara Biselli (114669)
Francesca Desiderio (2588137)
Paolo Bagnaresi (84939)
Slavica Matic (4098787)
Maria Gullino (3579608)
Alessandro Infantino (4098784)
Davide Spadaro (1525594)
Giampiero ValĂ¨ (3486386)

June 2017

Details of the two QTL (on chromosomes Os1 and Os4) associated to bakanae disease resistance in the ...

Additional file 1: Table S1. of Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maize

Junqiang Ding (819208)
Farhan Ali (109365)
Gengshen Chen (821113)
Huihui Li (227521)
George Mahuku (3554045)
Ning Yang (114965)
Luis Narro (3554039)
Cosmos Magorokosho (3554048)
Dan Makumbi (3554042)
Jianbing Yan (109373)

August 2015

The list of the lines and their phenotypic evaluation to NCLB in the association panel. (ODS 58 kb

Additional file 12: Table S6. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

Christine Dilla-Ermita (3848641)
Erwin Tandayu (3848626)
Venice Juanillas (3848653)
Jeffrey Detras (3848632)
Dennis Lozada (3848650)
Maria Dwiyanti (3848629)
Casiana Vera Cruz (416308)
Edwige Mbanjo (3848644)
Edna Ardales (3848638)
Maria Diaz (3848635)
Merlyn Mendioro (3848647)
Michael Thomson (376401)
Tobias Kretzschmar (732027)

March 2017

Most significant haplotypes associated with resistance to nine Xoo strains. (XLSX 12 kb

Additional file 11: Table S5. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

Christine Dilla-Ermita (3848641)
Erwin Tandayu (3848626)
Venice Juanillas (3848653)
Jeffrey Detras (3848632)
Dennis Lozada (3848650)
Maria Dwiyanti (3848629)
Casiana Vera Cruz (416308)
Edwige Mbanjo (3848644)
Edna Ardales (3848638)
Maria Diaz (3848635)
Merlyn Mendioro (3848647)
Michael Thomson (376401)
Tobias Kretzschmar (732027)

March 2017

Comparison of allele frequency of SNPs overlapping/flanking Xa genes between GWAS 198 indica genotyp...

Additional file 2: Figure S1. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

Christine Dilla-Ermita (3848641)
Erwin Tandayu (3848626)
Venice Juanillas (3848653)
Jeffrey Detras (3848632)
Dennis Lozada (3848650)
Maria Dwiyanti (3848629)
Casiana Vera Cruz (416308)
Edwige Mbanjo (3848644)
Edna Ardales (3848638)
Maria Diaz (3848635)
Merlyn Mendioro (3848647)
Michael Thomson (376401)
Tobias Kretzschmar (732027)

March 2017

Phylogenetic and population structure of the 285 diverse panel. a) Radial tree of 285 diverse germpl...

Additional file 4: Figure S3. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

Christine Dilla-Ermita (3848641)
Erwin Tandayu (3848626)
Venice Juanillas (3848653)
Jeffrey Detras (3848632)
Dennis Lozada (3848650)
Maria Dwiyanti (3848629)
Casiana Vera Cruz (416308)
Edwige Mbanjo (3848644)
Edna Ardales (3848638)
Maria Diaz (3848635)
Merlyn Mendioro (3848647)
Michael Thomson (376401)
Tobias Kretzschmar (732027)

March 2017

Genome-wide association analysis of bacterial blight resistance to nine Xoo strains in 198 indica ge...

Additional file 3: Figure S2. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

Christine Dilla-Ermita (3848641)
Erwin Tandayu (3848626)
Venice Juanillas (3848653)
Jeffrey Detras (3848632)
Dennis Lozada (3848650)
Maria Dwiyanti (3848629)
Casiana Vera Cruz (416308)
Edwige Mbanjo (3848644)
Edna Ardales (3848638)
Maria Diaz (3848635)
Merlyn Mendioro (3848647)
Michael Thomson (376401)
Tobias Kretzschmar (732027)

March 2017

Genome-wide association analysis of bacterial blight resistance to nine Xoo strains in 248 genotypes...

Genome-wide association analysis tracks bacterial leaf blight resistance loci in rice diverse germplasm

Dilla-Ermita, Christine J
Tandayu, Erwin
Juanillas, Venice Margarette
Detras, Jeffrey
Lozada, Dennis Nicuh
Dwiyanti, Marie Stefanie
Cruz, Casiana Vera
Mbanjo, Edwige Gaby Nkouaya
Ardales, Edna
Diaz, Maria Genaleen
Mendioro, Merlyn
Thomson, Michael J
Kretzschmar, Tobias

January 2017

Background: A range of resistance loci against different races of Xanthomonas oryzae pv. oryzae (Xoo...

Additional file 3: Table S1. of Identification of bakanae disease resistance loci in japonica rice through genome wide association study

Andrea Volante (141325)
Alessandro Tondelli (3167490)
Maria Aragona (4098790)
Maria Valente (4098793)
Chiara Biselli (114669)
Francesca Desiderio (2588137)
Paolo Bagnaresi (84939)
Slavica Matic (4098787)
Maria Gullino (3579608)
Alessandro Infantino (4098784)
Davide Spadaro (1525594)
Giampiero ValĂ¨ (3486386)

June 2017

Genetic diversity (A), Genetic divergence (FST) (B) and marker density (C) estimates computed for th...

Additional file 9: Table S4. of Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maize

Junqiang Ding (819208)
Farhan Ali (109365)
Gengshen Chen (821113)
Huihui Li (227521)
George Mahuku (3554045)
Ning Yang (114965)
Luis Narro (3554039)
Cosmos Magorokosho (3554048)
Dan Makumbi (3554042)
Jianbing Yan (109373)

August 2015

SNP loci found to be associated with resistance to NCLB by GWAS using Anderson-Darling test. For the...

Additional file 3: Table S3. of Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maize

Junqiang Ding (819208)
Farhan Ali (109365)
Gengshen Chen (821113)
Huihui Li (227521)
George Mahuku (3554045)
Ning Yang (114965)
Luis Narro (3554039)
Cosmos Magorokosho (3554048)
Dan Makumbi (3554042)
Jianbing Yan (109373)

August 2015

The proportion of variance explained by ten groups of principal component analyses in association pa...

Additional file 7: Table S2. of Identification of bakanae disease resistance loci in japonica rice through genome wide association study

Andrea Volante (141325)
Alessandro Tondelli (3167490)
Maria Aragona (4098790)
Maria Valente (4098793)
Chiara Biselli (114669)
Francesca Desiderio (2588137)
Paolo Bagnaresi (84939)
Slavica Matic (4098787)
Maria Gullino (3579608)
Alessandro Infantino (4098784)
Davide Spadaro (1525594)
Giampiero ValĂ¨ (3486386)

June 2017

List of candidate genes, functionally annotated, selected on the base of the FDR value. (XLSX 14Â kb

Additional file 6: Figure S3. of Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maize

Junqiang Ding (819208)
Farhan Ali (109365)
Gengshen Chen (821113)
Huihui Li (227521)
George Mahuku (3554045)
Ning Yang (114965)
Luis Narro (3554039)
Cosmos Magorokosho (3554048)
Dan Makumbi (3554042)
Jianbing Yan (109373)

August 2015

Manhattan plot for Mean Rating in sub-group 1, 2 and 3, based on Anderson-Darling test. (DOC 64 kb

Preliminary genome-wide association mapping of rice bacterial leaf blight resistance loci using major Korean races of Xoo (\u27Xanthomonas oryzae\u27)

Ali, Asjad
Yoon-Hyun, Do
Noh, Tae-Hwan
Choi, Yu-Mi
Lee, Sukyeung
Oh, Sejong
Lee, Myung-Chul

January 2017

Bacterial leaf blight (BLB), caused by \u27X. oryzae pv. oryzae\u27 (Xoo), is one of the most destru...

Identification of New Resistance Loci Against Sheath Blight Disease in Rice Through Genome-Wide Association Study

Zongxiang Chen
Zhiming Feng
Houxiang Kang
Jianhua Zhao
Tianxiao Chen
Qianqian Li
Hongbing Gong
Yafang Zhang
Xijun Chen
Xuebiao Pan
Wende Liu
Guoliang Wang
Shimin Zuo

January 2019

Sheath blight (SB) caused by the soil borne pathogen Rhizoctonia solani is one of the most serious g...

Additional file 4: Figure S3. of Identification of bakanae disease resistance loci in japonica rice through genome wide association study

Andrea Volante (141325)
Alessandro Tondelli (3167490)
Maria Aragona (4098790)
Maria Valente (4098793)
Chiara Biselli (114669)
Francesca Desiderio (2588137)
Paolo Bagnaresi (84939)
Slavica Matic (4098787)
Maria Gullino (3579608)
Alessandro Infantino (4098784)
Davide Spadaro (1525594)
Giampiero ValĂ¨ (3486386)

June 2017

Details of the two QTL (on chromosomes Os1 and Os4) associated to bakanae disease resistance in the ...

Additional file 1: Table S1. of Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maize

Junqiang Ding (819208)
Farhan Ali (109365)
Gengshen Chen (821113)
Huihui Li (227521)
George Mahuku (3554045)
Ning Yang (114965)
Luis Narro (3554039)
Cosmos Magorokosho (3554048)
Dan Makumbi (3554042)
Jianbing Yan (109373)

August 2015

The list of the lines and their phenotypic evaluation to NCLB in the association panel. (ODS 58 kb

Additional file 6: Table S3. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

Abstract

Extracted data

Additional file 6: Table S3. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

Abstract

Extracted data

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