Comparison between simulations and experiments from [24]: (a) intermediate membrane, (b) soft membrane.

Active forces driving membrane proximity.

Kai Liu (159026)
Brian Chu (550342)
Jay Newby (6634982)
Elizabeth L. Read (2337121)
John Lowengrub (383422)
Jun Allard (6634985)

April 2019

(A) Active force of F = 20 pN applied to single membrane. Simulations including thermal undulations ...

The comes and goes of lipid membranes under the lens of computer simulations

Del Pópolo, M.

August 2019

When phospholipids dissolve in water they self-assemble into a variety of structures of which bilaye...

Simulations of membrane proteins in a mixture of lipids with varying levels of chain unsaturation

Javanainen, Matti

April 2019

Four structurally distinct membrane proteins were simulated in a mixture of phospholipids. The membr...

Hard membrane: Comparison between simulations and experiments from [24].

Mostapha Ariane (3910123)
Mohamed Hatem Allouche (3910126)
Marco Bussone (3910117)
Fausto Giacosa (3910120)
Frédéric Bernard (3910114)
Mostafa Barigou (1857850)
Alessio Alexiadis (737334)

April 2017

Hard membrane: Comparison between simulations and experiments from [<a href="http://www.plosone.o...

Simulations of a membrane with a dilute concentration of proteins in different system sizes

Javanainen, Matti

January 2020

Simulations of a dilute (400 lipids per protein per leaflet) DPPC membranes with seven types of embe...

Comparison of the equilibrated closed pore structure to the open pores structures from a simulation with distance restraints and tension ().

Evelyne Deplazes (135510)
Martti Louhivuori (135512)
Dylan Jayatilaka (135516)
Siewert J. Marrink (135518)
Ben Corry (135521)

September 2012

Side view showing the position of the C-terminal and N-terminal. Top view showing the backbone pa...

Molecular dynamics simulations on phospholipid membranes

Hyvönen, M. (Marja)

March 2001

Abstract Phospholipids are the main components of cell membranes, lipoproteins and other membrane s...

Lipid membrane simulations with flat-bottom and double-bilayer setups, part 1/2

Biriukov, Denys
Javanainen, Matti

June 2023

Gromacs molecular dynamics simulations to compare membrane and solvent properties from lipid membran...

Lipid membrane simulations with flat-bottom and double-bilayer setups, part 2/2

Biriukov, Denys
Javanainen, Matti

June 2023

Gromacs molecular dynamics simulations to compare membrane and solvent properties from lipid membran...

Multiscale Simulations of Biological Membranes : The Challenge To Understand Biological Phenomena in a Living Substance

Enkavi, Giray
Javanainen, Matti
Kulig, Waldemar
Róg, Tomasz
Vattulainen, Ilpo

May 2019

Biological membranes are tricky to investigate. They are complex in terms of molecular composition a...

Phase behavior of multicomponent membranes: Experimental and computational techniques

Bagatolli, Luis
Sunil Kumar, P. B.

January 2009

Recent developments in biology seems to indicate that the Fluid Mosaic model of membrane proposed by...

Immobile membrane nodes screen membrane mediated attractions between filaments.

Julian Weichsel (3158325)
Phillip L. Geissler (343007)

July 2016

(a) & (b) Two simulated tubes at equal height, generated by simulations with the same initial fil...

Molecular dynamics studies of the POPE membrane environment.

Ygara S. Mendes (302186)
Nathalia S. Alves (302188)
Theo L. F. Souza (132701)
Ivanildo P. Sousa Jr. (302191)
M. Lucia Bianconi (302193)
Rafael C. Bernardi (302194)
Pedro G. Pascutti (302195)
Jerson L. Silva (119781)
Andre M. O. Gomes (302196)
Andréa C. Oliveira (302197)

February 2013

(A) The RMSD of FLAG (black) and FLAH (red). (B) The distance between the p...

Comparing membrane simulations to scattering experiments : Introducing the SIMtoEXP software

Ku\u10derka, Norbert
Katsaras, John
Nagle, John F.

April 2010

SIMtoEXP is a software package designed to facilitate the comparison of biomembrane simulations with...

Simulation of the measurements with epithelial cells from Burnette et [20].

Juliane Zimmermann (520417)
Martin Falcke (108198)

February 2014

The same simulation as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0...

Active forces driving membrane proximity.

Kai Liu (159026)
Brian Chu (550342)
Jay Newby (6634982)
Elizabeth L. Read (2337121)
John Lowengrub (383422)
Jun Allard (6634985)

April 2019

(A) Active force of F = 20 pN applied to single membrane. Simulations including thermal undulations ...

The comes and goes of lipid membranes under the lens of computer simulations

Del Pópolo, M.

August 2019

When phospholipids dissolve in water they self-assemble into a variety of structures of which bilaye...

Simulations of membrane proteins in a mixture of lipids with varying levels of chain unsaturation

Javanainen, Matti

April 2019

Four structurally distinct membrane proteins were simulated in a mixture of phospholipids. The membr...

Hard membrane: Comparison between simulations and experiments from [24].

Mostapha Ariane (3910123)
Mohamed Hatem Allouche (3910126)
Marco Bussone (3910117)
Fausto Giacosa (3910120)
Frédéric Bernard (3910114)
Mostafa Barigou (1857850)
Alessio Alexiadis (737334)

April 2017

Hard membrane: Comparison between simulations and experiments from [<a href="http://www.plosone.o...

Simulations of a membrane with a dilute concentration of proteins in different system sizes

Javanainen, Matti

January 2020

Simulations of a dilute (400 lipids per protein per leaflet) DPPC membranes with seven types of embe...

Comparison of the equilibrated closed pore structure to the open pores structures from a simulation with distance restraints and tension ().

Evelyne Deplazes (135510)
Martti Louhivuori (135512)
Dylan Jayatilaka (135516)
Siewert J. Marrink (135518)
Ben Corry (135521)

September 2012

Side view showing the position of the C-terminal and N-terminal. Top view showing the backbone pa...

Molecular dynamics simulations on phospholipid membranes

Hyvönen, M. (Marja)

March 2001

Abstract Phospholipids are the main components of cell membranes, lipoproteins and other membrane s...

Lipid membrane simulations with flat-bottom and double-bilayer setups, part 1/2

Biriukov, Denys
Javanainen, Matti

June 2023

Gromacs molecular dynamics simulations to compare membrane and solvent properties from lipid membran...

Lipid membrane simulations with flat-bottom and double-bilayer setups, part 2/2

Biriukov, Denys
Javanainen, Matti

June 2023

Gromacs molecular dynamics simulations to compare membrane and solvent properties from lipid membran...

Multiscale Simulations of Biological Membranes : The Challenge To Understand Biological Phenomena in a Living Substance

Enkavi, Giray
Javanainen, Matti
Kulig, Waldemar
Róg, Tomasz
Vattulainen, Ilpo

May 2019

Biological membranes are tricky to investigate. They are complex in terms of molecular composition a...

Phase behavior of multicomponent membranes: Experimental and computational techniques

Bagatolli, Luis
Sunil Kumar, P. B.

January 2009

Recent developments in biology seems to indicate that the Fluid Mosaic model of membrane proposed by...

Immobile membrane nodes screen membrane mediated attractions between filaments.

Julian Weichsel (3158325)
Phillip L. Geissler (343007)

July 2016

(a) & (b) Two simulated tubes at equal height, generated by simulations with the same initial fil...

Molecular dynamics studies of the POPE membrane environment.

Ygara S. Mendes (302186)
Nathalia S. Alves (302188)
Theo L. F. Souza (132701)
Ivanildo P. Sousa Jr. (302191)
M. Lucia Bianconi (302193)
Rafael C. Bernardi (302194)
Pedro G. Pascutti (302195)
Jerson L. Silva (119781)
Andre M. O. Gomes (302196)
Andréa C. Oliveira (302197)

February 2013

(A) The RMSD of FLAG (black) and FLAH (red). (B) The distance between the p...

Comparing membrane simulations to scattering experiments : Introducing the SIMtoEXP software

Ku\u10derka, Norbert
Katsaras, John
Nagle, John F.

April 2010

SIMtoEXP is a software package designed to facilitate the comparison of biomembrane simulations with...

Simulation of the measurements with epithelial cells from Burnette et [20].

Juliane Zimmermann (520417)
Martin Falcke (108198)

February 2014

The same simulation as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0...

Active forces driving membrane proximity.

Kai Liu (159026)
Brian Chu (550342)
Jay Newby (6634982)
Elizabeth L. Read (2337121)
John Lowengrub (383422)
Jun Allard (6634985)

April 2019

(A) Active force of F = 20 pN applied to single membrane. Simulations including thermal undulations ...

The comes and goes of lipid membranes under the lens of computer simulations

Del Pópolo, M.

August 2019

When phospholipids dissolve in water they self-assemble into a variety of structures of which bilaye...

Simulations of membrane proteins in a mixture of lipids with varying levels of chain unsaturation

Javanainen, Matti

April 2019

Four structurally distinct membrane proteins were simulated in a mixture of phospholipids. The membr...

Comparison between simulations and experiments from [24]: (a) intermediate membrane, (b) soft membrane.

Abstract

Extracted data

Topics

Comparison between simulations and experiments from [24]: (a) intermediate membrane, (b) soft membrane.

Abstract

Extracted data

Topics

Related items

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