Additional file 17: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Additional file 2: of Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest

Jacob Steenwyk (3418568)
John Soghigian (3418565)
John Perfect (3418562)
John Gibbons (3418559)

September 2016

Individual copy number estimates and VST for each 100Â bp bin relative to the Cryptococcus gattii R2...

Additional file 5: of Comparative genomics of downy mildews reveals potential adaptations to biotrophy

Kyle Fletcher (6021464)
Steven Klosterman (6021467)
Lida Derevnina (6021470)
Frank Martin (54040)
Lien Bertier (502273)
Steven Koike (6021473)
Sebastian Reyes-Chin-Wo (281014)
Beiquan Mou (2935830)
Richard Michelmore (2560)

November 2018

Long Terminal Repeat plots. Long terminal repeats are plotted as previously described [23]. The top ...

Additional file 3: Figure S7. of Temperature-dependent sRNA transcriptome of the Lyme disease spirochete

Niko Popitsch (795982)
Ivana Bilusic (3620147)
Philipp Rescheneder (795983)
Renée Schroeder (9110)
Meghan Lybecker (795981)

January 2017

Nucleotide composition around the 5′ ends of detected small RNAs. The plots illustrate the averaged ...

Additional file 21: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

Reads mapping profile of highly repressed retrotransposons. Visualization of mapped reads profile fr...

Additional file 1: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

Retrotransposon sequence list from all 17 C. gattii strains. The retrotransposon list contains detai...

Additional file 15: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

Synteny analysis of R265.3, R265.19 and R265.22 orthologous sequences. Localization of orthologous r...

Additional file 13: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

Retrotransposon-associated synteny breakpoints 5 in R265. Figure shows a multiple genome alignment o...

Additional file 10: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

Retrotransposon-associated synteny breakpoints 2 in R265. Figure shows a multiple genome alignment o...

Additional file 8: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

Retrotransposon-associated synteny breakpoints 5 in WM276. Figure shows a multiple genome alignment ...

Additional file 6: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

Retrotransposon-associated synteny breakpoints 3 in WM276. Figure shows a multiple genome alignment ...

Additional file 14: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

VGII multiple genome alignment. Multiple genome alignment of strains from VGII molecular type with M...

Additional file 3: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

VGI multiple genome alignment. Multiple genome alignment of strains from VGI molecular type with Mau...

sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Aline Gröhs Ferrareze
Rodrigo Silva Araujo Streit
Francine Melise dos Santos
Augusto Schrank
Livia Kmetzsch
Marilene Henning Vainstein
Charley Christian Staats

April 2017

Abstract Background The absence of Argonaute genes in the fungal pathogen Cryptococcus gattii R265 a...

Additional file 9: of Genome-wide analysis of LTR-retrotransposons in oil palm

Thierry BeulĂŠ (3483767)
MawussĂŠ Agbessi (3483761)
Stephane Dussert (2332948)
Estelle Jaligot (537974)
Romain Guyot (166092)

October 2015

Transcriptional activity of 63 LTR retrotransposons. A: Percentage of normalized read counts per sup...

Genome-wide occupancy profiles of RNAPII suggested a role for the RNAPII-CTD in retrotransposon regulation.

Maria J. Aristizabal (451648)
Gian Luca Negri (451649)
Michael S. Kobor (137389)

October 2015

<p>(A) Box plot showing differences in average MAT RNAPII (Rpb3) occupancy scores between the wild t...

Additional file 2: of Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest

Jacob Steenwyk (3418568)
John Soghigian (3418565)
John Perfect (3418562)
John Gibbons (3418559)

September 2016

Individual copy number estimates and VST for each 100Â bp bin relative to the Cryptococcus gattii R2...

Additional file 5: of Comparative genomics of downy mildews reveals potential adaptations to biotrophy

Kyle Fletcher (6021464)
Steven Klosterman (6021467)
Lida Derevnina (6021470)
Frank Martin (54040)
Lien Bertier (502273)
Steven Koike (6021473)
Sebastian Reyes-Chin-Wo (281014)
Beiquan Mou (2935830)
Richard Michelmore (2560)

November 2018

Long Terminal Repeat plots. Long terminal repeats are plotted as previously described [23]. The top ...

Additional file 3: Figure S7. of Temperature-dependent sRNA transcriptome of the Lyme disease spirochete

Niko Popitsch (795982)
Ivana Bilusic (3620147)
Philipp Rescheneder (795983)
Renée Schroeder (9110)
Meghan Lybecker (795981)

January 2017

Nucleotide composition around the 5′ ends of detected small RNAs. The plots illustrate the averaged ...

Additional file 21: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

Reads mapping profile of highly repressed retrotransposons. Visualization of mapped reads profile fr...

Additional file 1: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

Retrotransposon sequence list from all 17 C. gattii strains. The retrotransposon list contains detai...

Additional file 15: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

Synteny analysis of R265.3, R265.19 and R265.22 orthologous sequences. Localization of orthologous r...

Additional file 13: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

Retrotransposon-associated synteny breakpoints 5 in R265. Figure shows a multiple genome alignment o...

Additional file 10: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

Retrotransposon-associated synteny breakpoints 2 in R265. Figure shows a multiple genome alignment o...

Additional file 8: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

Retrotransposon-associated synteny breakpoints 5 in WM276. Figure shows a multiple genome alignment ...

Additional file 6: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

Retrotransposon-associated synteny breakpoints 3 in WM276. Figure shows a multiple genome alignment ...

Additional file 14: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

VGII multiple genome alignment. Multiple genome alignment of strains from VGII molecular type with M...

Additional file 3: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Ferrareze (3922781)
Rodrigo Streit (3922739)
Francine dos Santos (3922742)
Augusto Schrank (141891)
Livia Kmetzsch (3922733)
Marilene Vainstein (3475226)
Charley Staats (3922730)

April 2017

VGI multiple genome alignment. Multiple genome alignment of strains from VGI molecular type with Mau...

sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Patrícia Aline Gröhs Ferrareze
Rodrigo Silva Araujo Streit
Francine Melise dos Santos
Augusto Schrank
Livia Kmetzsch
Marilene Henning Vainstein
Charley Christian Staats

April 2017

Abstract Background The absence of Argonaute genes in the fungal pathogen Cryptococcus gattii R265 a...

Additional file 9: of Genome-wide analysis of LTR-retrotransposons in oil palm

Thierry BeulĂŠ (3483767)
MawussĂŠ Agbessi (3483761)
Stephane Dussert (2332948)
Estelle Jaligot (537974)
Romain Guyot (166092)

October 2015

Transcriptional activity of 63 LTR retrotransposons. A: Percentage of normalized read counts per sup...

Genome-wide occupancy profiles of RNAPII suggested a role for the RNAPII-CTD in retrotransposon regulation.

Maria J. Aristizabal (451648)
Gian Luca Negri (451649)
Michael S. Kobor (137389)

October 2015

<p>(A) Box plot showing differences in average MAT RNAPII (Rpb3) occupancy scores between the wild t...

Additional file 2: of Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest

Jacob Steenwyk (3418568)
John Soghigian (3418565)
John Perfect (3418562)
John Gibbons (3418559)

September 2016

Individual copy number estimates and VST for each 100Â bp bin relative to the Cryptococcus gattii R2...

Additional file 5: of Comparative genomics of downy mildews reveals potential adaptations to biotrophy

Kyle Fletcher (6021464)
Steven Klosterman (6021467)
Lida Derevnina (6021470)
Frank Martin (54040)
Lien Bertier (502273)
Steven Koike (6021473)
Sebastian Reyes-Chin-Wo (281014)
Beiquan Mou (2935830)
Richard Michelmore (2560)

November 2018

Long Terminal Repeat plots. Long terminal repeats are plotted as previously described [23]. The top ...

Additional file 3: Figure S7. of Temperature-dependent sRNA transcriptome of the Lyme disease spirochete

Niko Popitsch (795982)
Ivana Bilusic (3620147)
Philipp Rescheneder (795983)
Renée Schroeder (9110)
Meghan Lybecker (795981)

January 2017

Nucleotide composition around the 5′ ends of detected small RNAs. The plots illustrate the averaged ...

Additional file 17: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Abstract

Extracted data

Additional file 17: of sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII

Abstract

Extracted data

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