Unsupervised hierarchical clustering of three historically related cattle breeds (Campine, Deep Red, Improved Red, and EBRW).

On the Breeds of Cattle-Historic and Current Classifications

Felius, Marleen
Koolmees, Peter A.
Theunissen, Bert
European Cattle Genetic Diversity Consortium

January 2011

Classification of cattle breeds contributes to our understanding of the history of cattle and is ess...

Hierarchical clustering of biological process GO terms associated with genes located in outlier loci (regions) detected by XP-EHH method in comparisons between Yucatan miniature pig and Duroc (A), Landrace (B) and Yorkshire (C).

Hyeongmin Kim (425015)
Ki Duk Song (602263)
Hyeon Jeong Kim (540977)
WonCheoul Park (231024)
Jaemin Kim (386282)
Taeheon Lee (2018224)
Dong-Hyun Shin (726122)
Woori Kwak (425016)
Young-jun Kwon (726123)
Samsun Sung (726124)
Sunjin Moon (75684)
Kyung-Tai Lee (62460)
Namshin Kim (6056)
Joon Ki Hong (726125)
Kyung Yeon Eo (726126)
Kang Seok Seo (39499)
Girak Kim (407754)
Sungmoo Park (726127)
Cheol-Heui Yun (78927)
Hyunil Kim (304026)
Kimyung Choi (726128)
Jiho Kim (16844)
Woon Kyu Lee (673015)
Duk-Kyung Kim (726129)
Jae-Don Oh (592120)
Eui-Soo Kim (485190)
Seoae Cho (75685)
Hak-Kyo Lee (540982)
Tae-Hun Kim (62458)
Heebal Kim (9991)

April 2015

The gene list of each GO term clustered using DAVID was compared to calculate the distance betwee...

Revisiting demographic processes in cattle with genome-wide population genetic analysis

Orozco Terwengel, P
Barbato, Mario (ORCID:0000-0002-7203-1549)
Nicolazzi, E
Biscarini, F
Milanesi, Marco
Davies, W
Williams, D
Stella, A
Ajmone Marsan, Paolo (ORCID:0000-0003-3165-4579)
Bruford, Mw

January 2015

The domestication of the aurochs took place approximately 10,000 years ago giving rise to the two ma...

FastSTRUCTURE hierarchical clustering for the three historically related breeds: Campine, Deep Red, and EBRW using K = 4.

Liesbeth François (3937532)
Katrien Wijnrocx (3937535)
Frédéric G. Colinet (3937544)
Nicolas Gengler (3937541)
Bettine Hulsegge (3937538)
Jack J. Windig (802405)
Nadine Buys (2608603)
Steven Janssens (277250)

April 2017

FastSTRUCTURE hierarchical clustering for the three historically related breeds: Campine, Deep Re...

Phylogram of the inferred relationships between 74 cattle breeds.

Jared E. Decker (534281)
Stephanie D. McKay (236279)
Megan M. Rolf (544071)
JaeWoo Kim (544072)
Antonio Molina Alcalá (544073)
Tad S. Sonstegard (175161)
Olivier Hanotte (89422)
Anders Götherström (216373)
Christopher M. Seabury (194409)
Lisa Praharani (544074)
Masroor Ellahi Babar (544075)
Luciana Correia de Almeida Regitano (544076)
Mehmet Ali Yildiz (544077)
Michael P. Heaton (186097)
Wan-Sheng Liu (200939)
Chu-Zhao Lei (380116)
James M. Reecy (121998)
Muhammad Saif-Ur-Rehman (544078)
Robert D. Schnabel (194392)
Jeremy F. Taylor (179789)

March 2014

Breeds were colored according to their geographic origin; black: Africa, green: Asia, red: North ...

Clustering assignment of the ten Brazilian bovine breeds obtained by STRUCTURE analyses

Andréa A Egito (40064)
Samuel R Paiva (40065)
Maria do Socorro M Albuquerque (40066)
Arthur S Mariante (40067)
Leonardo D Almeida (40068)
Silvia R Castro (40069)
Dario Grattapaglia (21786)

December 2011

Copyright information:Taken from "Microsatellite based genetic diversity and relati...

Hierarchical clustering of male dogs from various breeds in set 2.

Carina Salt (4413646)
Penelope J. Morris (644264)
Alexander J. German (333194)
Derek Wilson (4413649)
Elizabeth M. Lund (4413643)
Tim J. Cole (112581)
Richard F. Butterwick (644265)

September 2017

Dendrogram illustrating hierarchical clustering conducted on the median growth trajectory of male...

MOESM7 of Conservation status and historical relatedness of Italian cattle breeds

Salvatore Mastrangelo (4590580)
Elena Ciani (185004)
Paolo Ajmone Marsan (3297582)
Alessandro Bagnato (3173586)
Luca Battaglini (5448944)
Riccardo Bozzi (5296228)
Antonello Carta (5448950)
Gennaro Catillo (3863749)
Martino Cassandro (5448953)
Sara Casu (5448941)
Roberta Ciampolini (4374967)
Paola Crepaldi (517054)
Mariasilvia DâAndrea (3564821)
Rosalia Gerlando (5448947)
Luca Fontanesi (552501)
Maria Longeri (32277)
NicolĂ˛ Macciotta (3563936)
Roberto Mantovani (14690)
Donata Marletta (3261543)
Donato Matassino (3198309)
Marcello Mele (5448956)
Giulio Pagnacco (3228531)
Camillo Pieramati (5448959)
Baldassare Portolano (2862608)
Francesca Sarti (3564815)
Marco Tolone (4590574)
Fabio Pilla (3265863)

June 2018

Additional file 7: Figure S4. Model-based clustering of the estimated membership fractions of indivi...

Genetic contributions from Iberian, British, Continental European and Zebu breeds to Creole cattle.

Amparo M. Martínez (122278)
Luis T. Gama (122281)
Javier Cañón (122285)
Catarina Ginja (122289)
Juan V. Delgado (122293)
Susana Dunner (122296)
Vincenzo Landi (122299)
Inmaculada Martín-Burriel (122301)
M. Cecilia T. Penedo (102268)
Clementina Rodellar (122304)
Jose Luis Vega-Pla (122306)
Atzel Acosta (122309)
Luz A. Álvarez (122312)
Esperanza Camacho (122316)
Oscar Cortés (122319)
Jose R. Marques (122323)
Roberto Martínez (122326)
Ruben D. Martínez (122329)
Lilia Melucci (122332)
Guillermo Martínez-Velázquez (122335)
Jaime E. Muñoz (122338)
Alicia Postiglioni (122342)
Jorge Quiroz (122347)
Philip Sponenberg (122352)
Odalys Uffo (122359)
Axel Villalobos (122365)
Delsito Zambrano (122371)
Pilar Zaragoza (122378)

November 2012

Graphical representation of maximum-likelihood estimates of proportional genetic contributions fo...

Hierarchical clustering of Lens accessions based on qualitative phenotypic data.

Mohar Singh (629840)
Ishwari Singh Bisht (634400)
Sandeep Kumar (145759)
Manoranjan Dutta (634401)
Kailash Chander Bansal (634402)
Moreshwar Karale (634403)
Ashutosh Sarker (634404)
Ahmad Amri (634405)
Shiv Kumar (634406)
Swapan Kumar Datta (634407)

September 2014

Hierarchical clustering of Lens accessions based on qualitative phenotypic data.</p

The Bos taurus–Bos indicus balance in fertility and milk related genes - Fig 2

Parthan Kasarapu (4318843)
Laercio R. Porto-Neto (523652)
Marina R. S. Fortes (601984)
Sigrid A. Lehnert (665116)
Mauricio A. Mudadu (4318840)
Luiz Coutinho (3508640)
Luciana Regitano (3407810)
Andrew George (4318846)
Antonio Reverter (61185)

August 2017

(A) Principal Component Analysis of SNP genotypes corresponding to cattle breeds grouped b...

Phylogram of the inferred relationships between 134 cattle breeds.

Jared E. Decker (534281)
Stephanie D. McKay (236279)
Megan M. Rolf (544071)
JaeWoo Kim (544072)
Antonio Molina Alcalá (544073)
Tad S. Sonstegard (175161)
Olivier Hanotte (89422)
Anders Götherström (216373)
Christopher M. Seabury (194409)
Lisa Praharani (544074)
Masroor Ellahi Babar (544075)
Luciana Correia de Almeida Regitano (544076)
Mehmet Ali Yildiz (544077)
Michael P. Heaton (186097)
Wan-Sheng Liu (200939)
Chu-Zhao Lei (380116)
James M. Reecy (121998)
Muhammad Saif-Ur-Rehman (544078)
Robert D. Schnabel (194392)
Jeremy F. Taylor (179789)

March 2014

Breeds were colored according to their geographic origin; black: Africa, green: Asia, red: North ...

A definition of unknown parent groups based on bull usage patterns across herds

Renand, Gilles
Phocas, Florence

January 2011

In genetic evaluations, the definition of unknown parent groups (UPG) is usually based on time perio...

On the Breeds of Cattle—Historic and Current Classifications

Marleen Felius

November 2011

Classification of cattle breeds contributes to our understanding of the history of cattle and is ess...

On the Breeds of Cattle—Historic and Current Classifications

Felius, Marleen
Koolmees, Peter A.
Theunissen, Bert
Lenstra, Johannes A.

December 2011

Classification of cattle breeds contributes to our understanding of the history of cattle and is ess...

On the Breeds of Cattle-Historic and Current Classifications

Felius, Marleen
Koolmees, Peter A.
Theunissen, Bert
European Cattle Genetic Diversity Consortium

January 2011

Classification of cattle breeds contributes to our understanding of the history of cattle and is ess...

Hierarchical clustering of biological process GO terms associated with genes located in outlier loci (regions) detected by XP-EHH method in comparisons between Yucatan miniature pig and Duroc (A), Landrace (B) and Yorkshire (C).

Hyeongmin Kim (425015)
Ki Duk Song (602263)
Hyeon Jeong Kim (540977)
WonCheoul Park (231024)
Jaemin Kim (386282)
Taeheon Lee (2018224)
Dong-Hyun Shin (726122)
Woori Kwak (425016)
Young-jun Kwon (726123)
Samsun Sung (726124)
Sunjin Moon (75684)
Kyung-Tai Lee (62460)
Namshin Kim (6056)
Joon Ki Hong (726125)
Kyung Yeon Eo (726126)
Kang Seok Seo (39499)
Girak Kim (407754)
Sungmoo Park (726127)
Cheol-Heui Yun (78927)
Hyunil Kim (304026)
Kimyung Choi (726128)
Jiho Kim (16844)
Woon Kyu Lee (673015)
Duk-Kyung Kim (726129)
Jae-Don Oh (592120)
Eui-Soo Kim (485190)
Seoae Cho (75685)
Hak-Kyo Lee (540982)
Tae-Hun Kim (62458)
Heebal Kim (9991)

April 2015

The gene list of each GO term clustered using DAVID was compared to calculate the distance betwee...

Revisiting demographic processes in cattle with genome-wide population genetic analysis

Orozco Terwengel, P
Barbato, Mario (ORCID:0000-0002-7203-1549)
Nicolazzi, E
Biscarini, F
Milanesi, Marco
Davies, W
Williams, D
Stella, A
Ajmone Marsan, Paolo (ORCID:0000-0003-3165-4579)
Bruford, Mw

January 2015

The domestication of the aurochs took place approximately 10,000 years ago giving rise to the two ma...

FastSTRUCTURE hierarchical clustering for the three historically related breeds: Campine, Deep Red, and EBRW using K = 4.

Liesbeth François (3937532)
Katrien Wijnrocx (3937535)
Frédéric G. Colinet (3937544)
Nicolas Gengler (3937541)
Bettine Hulsegge (3937538)
Jack J. Windig (802405)
Nadine Buys (2608603)
Steven Janssens (277250)

April 2017

FastSTRUCTURE hierarchical clustering for the three historically related breeds: Campine, Deep Re...

Phylogram of the inferred relationships between 74 cattle breeds.

Jared E. Decker (534281)
Stephanie D. McKay (236279)
Megan M. Rolf (544071)
JaeWoo Kim (544072)
Antonio Molina Alcalá (544073)
Tad S. Sonstegard (175161)
Olivier Hanotte (89422)
Anders Götherström (216373)
Christopher M. Seabury (194409)
Lisa Praharani (544074)
Masroor Ellahi Babar (544075)
Luciana Correia de Almeida Regitano (544076)
Mehmet Ali Yildiz (544077)
Michael P. Heaton (186097)
Wan-Sheng Liu (200939)
Chu-Zhao Lei (380116)
James M. Reecy (121998)
Muhammad Saif-Ur-Rehman (544078)
Robert D. Schnabel (194392)
Jeremy F. Taylor (179789)

March 2014

Breeds were colored according to their geographic origin; black: Africa, green: Asia, red: North ...

Clustering assignment of the ten Brazilian bovine breeds obtained by STRUCTURE analyses

Andréa A Egito (40064)
Samuel R Paiva (40065)
Maria do Socorro M Albuquerque (40066)
Arthur S Mariante (40067)
Leonardo D Almeida (40068)
Silvia R Castro (40069)
Dario Grattapaglia (21786)

December 2011

Copyright information:Taken from "Microsatellite based genetic diversity and relati...

Hierarchical clustering of male dogs from various breeds in set 2.

Carina Salt (4413646)
Penelope J. Morris (644264)
Alexander J. German (333194)
Derek Wilson (4413649)
Elizabeth M. Lund (4413643)
Tim J. Cole (112581)
Richard F. Butterwick (644265)

September 2017

Dendrogram illustrating hierarchical clustering conducted on the median growth trajectory of male...

MOESM7 of Conservation status and historical relatedness of Italian cattle breeds

Salvatore Mastrangelo (4590580)
Elena Ciani (185004)
Paolo Ajmone Marsan (3297582)
Alessandro Bagnato (3173586)
Luca Battaglini (5448944)
Riccardo Bozzi (5296228)
Antonello Carta (5448950)
Gennaro Catillo (3863749)
Martino Cassandro (5448953)
Sara Casu (5448941)
Roberta Ciampolini (4374967)
Paola Crepaldi (517054)
Mariasilvia DâAndrea (3564821)
Rosalia Gerlando (5448947)
Luca Fontanesi (552501)
Maria Longeri (32277)
NicolĂ˛ Macciotta (3563936)
Roberto Mantovani (14690)
Donata Marletta (3261543)
Donato Matassino (3198309)
Marcello Mele (5448956)
Giulio Pagnacco (3228531)
Camillo Pieramati (5448959)
Baldassare Portolano (2862608)
Francesca Sarti (3564815)
Marco Tolone (4590574)
Fabio Pilla (3265863)

June 2018

Additional file 7: Figure S4. Model-based clustering of the estimated membership fractions of indivi...

Genetic contributions from Iberian, British, Continental European and Zebu breeds to Creole cattle.

Amparo M. Martínez (122278)
Luis T. Gama (122281)
Javier Cañón (122285)
Catarina Ginja (122289)
Juan V. Delgado (122293)
Susana Dunner (122296)
Vincenzo Landi (122299)
Inmaculada Martín-Burriel (122301)
M. Cecilia T. Penedo (102268)
Clementina Rodellar (122304)
Jose Luis Vega-Pla (122306)
Atzel Acosta (122309)
Luz A. Álvarez (122312)
Esperanza Camacho (122316)
Oscar Cortés (122319)
Jose R. Marques (122323)
Roberto Martínez (122326)
Ruben D. Martínez (122329)
Lilia Melucci (122332)
Guillermo Martínez-Velázquez (122335)
Jaime E. Muñoz (122338)
Alicia Postiglioni (122342)
Jorge Quiroz (122347)
Philip Sponenberg (122352)
Odalys Uffo (122359)
Axel Villalobos (122365)
Delsito Zambrano (122371)
Pilar Zaragoza (122378)

November 2012

Graphical representation of maximum-likelihood estimates of proportional genetic contributions fo...

Hierarchical clustering of Lens accessions based on qualitative phenotypic data.

Mohar Singh (629840)
Ishwari Singh Bisht (634400)
Sandeep Kumar (145759)
Manoranjan Dutta (634401)
Kailash Chander Bansal (634402)
Moreshwar Karale (634403)
Ashutosh Sarker (634404)
Ahmad Amri (634405)
Shiv Kumar (634406)
Swapan Kumar Datta (634407)

September 2014

Hierarchical clustering of Lens accessions based on qualitative phenotypic data.</p

The Bos taurus–Bos indicus balance in fertility and milk related genes - Fig 2

Parthan Kasarapu (4318843)
Laercio R. Porto-Neto (523652)
Marina R. S. Fortes (601984)
Sigrid A. Lehnert (665116)
Mauricio A. Mudadu (4318840)
Luiz Coutinho (3508640)
Luciana Regitano (3407810)
Andrew George (4318846)
Antonio Reverter (61185)

August 2017

(A) Principal Component Analysis of SNP genotypes corresponding to cattle breeds grouped b...

Phylogram of the inferred relationships between 134 cattle breeds.

Jared E. Decker (534281)
Stephanie D. McKay (236279)
Megan M. Rolf (544071)
JaeWoo Kim (544072)
Antonio Molina Alcalá (544073)
Tad S. Sonstegard (175161)
Olivier Hanotte (89422)
Anders Götherström (216373)
Christopher M. Seabury (194409)
Lisa Praharani (544074)
Masroor Ellahi Babar (544075)
Luciana Correia de Almeida Regitano (544076)
Mehmet Ali Yildiz (544077)
Michael P. Heaton (186097)
Wan-Sheng Liu (200939)
Chu-Zhao Lei (380116)
James M. Reecy (121998)
Muhammad Saif-Ur-Rehman (544078)
Robert D. Schnabel (194392)
Jeremy F. Taylor (179789)

March 2014

Breeds were colored according to their geographic origin; black: Africa, green: Asia, red: North ...

A definition of unknown parent groups based on bull usage patterns across herds

Renand, Gilles
Phocas, Florence

January 2011

In genetic evaluations, the definition of unknown parent groups (UPG) is usually based on time perio...

On the Breeds of Cattle—Historic and Current Classifications

Marleen Felius

November 2011

Classification of cattle breeds contributes to our understanding of the history of cattle and is ess...

On the Breeds of Cattle—Historic and Current Classifications

Felius, Marleen
Koolmees, Peter A.
Theunissen, Bert
Lenstra, Johannes A.

December 2011

Classification of cattle breeds contributes to our understanding of the history of cattle and is ess...

On the Breeds of Cattle-Historic and Current Classifications

Felius, Marleen
Koolmees, Peter A.
Theunissen, Bert
European Cattle Genetic Diversity Consortium

January 2011

Classification of cattle breeds contributes to our understanding of the history of cattle and is ess...

Hierarchical clustering of biological process GO terms associated with genes located in outlier loci (regions) detected by XP-EHH method in comparisons between Yucatan miniature pig and Duroc (A), Landrace (B) and Yorkshire (C).

Hyeongmin Kim (425015)
Ki Duk Song (602263)
Hyeon Jeong Kim (540977)
WonCheoul Park (231024)
Jaemin Kim (386282)
Taeheon Lee (2018224)
Dong-Hyun Shin (726122)
Woori Kwak (425016)
Young-jun Kwon (726123)
Samsun Sung (726124)
Sunjin Moon (75684)
Kyung-Tai Lee (62460)
Namshin Kim (6056)
Joon Ki Hong (726125)
Kyung Yeon Eo (726126)
Kang Seok Seo (39499)
Girak Kim (407754)
Sungmoo Park (726127)
Cheol-Heui Yun (78927)
Hyunil Kim (304026)
Kimyung Choi (726128)
Jiho Kim (16844)
Woon Kyu Lee (673015)
Duk-Kyung Kim (726129)
Jae-Don Oh (592120)
Eui-Soo Kim (485190)
Seoae Cho (75685)
Hak-Kyo Lee (540982)
Tae-Hun Kim (62458)
Heebal Kim (9991)

April 2015

The gene list of each GO term clustered using DAVID was compared to calculate the distance betwee...

Revisiting demographic processes in cattle with genome-wide population genetic analysis

Orozco Terwengel, P
Barbato, Mario (ORCID:0000-0002-7203-1549)
Nicolazzi, E
Biscarini, F
Milanesi, Marco
Davies, W
Williams, D
Stella, A
Ajmone Marsan, Paolo (ORCID:0000-0003-3165-4579)
Bruford, Mw

January 2015

The domestication of the aurochs took place approximately 10,000 years ago giving rise to the two ma...

Unsupervised hierarchical clustering of three historically related cattle breeds (Campine, Deep Red, Improved Red, and EBRW).

Abstract

Extracted data

Unsupervised hierarchical clustering of three historically related cattle breeds (Campine, Deep Red, Improved Red, and EBRW).

Abstract

Extracted data

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