Additional file 1: of Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range

Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis, Venturiapirina, Venturia aucupariae and Venturia asperata

LE CAM, Bruno
SARGENT, Dan
GOUZY, Jerome
AMSELEM, Joëlle
BELLANGER, Marie-Noëlle
BOUCHEZ, Olivier
BROWN, Spencer
CAFFIER, Valérie
DE GRACIA COQUEREL, Marie
DEBUCHY, Robert
DUVAUX, Ludovic
PAYEN, Thibaut
SANNIER, Mélanie
SHILLER, Jason
COLLEMARE, Jérôme
LEMAIRE, Christophe

January 2019

The Venturia genus comprises fungal species that are pathogens on Rosaceae host plants, including V....

Population genome sequencing of the scab fungal species Venturia inaequalis, Venturia pirina, Venturia aucupariae and Venturia asperata

Le Cam, Bruno
Sargent, Dan
Gouzy, Jérôme
Amselem, Joëlle
Bellanger, Marie Noëlle
Bouchez, Olivier
Brown, Spencer
Caffier, Valérie
De Gracia, Marie
Debuchy, Robert
Duvaux, Ludovic
Payen, Thibaut
Sannier, Mélanie
Shiller, Jason
Collemare, Jérôme
Lemaire, Christophe

August 2019

The Venturia genus comprises fungal species that are pathogens on Rosaceae host plants, including V....

Additional file 3: of Comparative genomics of plant pathogenic Botrytis species with distinct host specificity

Claudio Valero-JimĂŠnez (3517739)
Javier Veloso (6456413)
Martijn Staats (139441)
Jan Kan (6456416)

March 2019

Number of genes encoding secreted proteins in Botrytis species grouped by GO annotation for the Biol...

Additional file 5: of Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range

Cecilia Deng (546631)
Kim Plummer (3995561)
Darcy Jones (3995579)
Carl Mesarich (728498)
Jason Shiller (3995558)
Adam Taranto (3995576)
Andrew Robinson (19205)
Patrick Kastner (3995573)
Nathan Hall (3995570)
Matthew Templeton (3995564)
Joanna Bowen (3995567)

May 2017

Benchmarking Universal Single-Copy Orthologs (BUSCO_v1.1b) analysis of the Venturia inaequalis and V...

Additional file 10: of Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range

Cecilia Deng (546631)
Kim Plummer (3995561)
Darcy Jones (3995579)
Carl Mesarich (728498)
Jason Shiller (3995558)
Adam Taranto (3995576)
Andrew Robinson (19205)
Patrick Kastner (3995573)
Nathan Hall (3995570)
Matthew Templeton (3995564)
Joanna Bowen (3995567)

May 2017

Summary of distribution of similar proteins with CAZyme domains encoded by the Venturia secretomes. ...

Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range

Deng, Cecilia H.
Jones, Darcy A. B.
Mesarich, Carl H.
Shiller, Jason
Taranto, Adam P.
Robinson, Andrew J.
Kastner, Patrick
Hall, Nathan E.
Templeton, Matthew D.
Bowen, Joanna K.

January 2017

Background: Fungal plant pathogens belonging to the genus Venturia cause damaging scab diseases of m...

Additional file 4: of Population structure of Venturia inaequalis, a causal agent of apple scab, in response to heterogeneous apple tree cultivation

Monika Michalecka (4783554)
Sylwester Masny (4783557)
Thibault Leroy (3276063)
Joanna PuĹawska (4783578)

January 2018

Table S1. Measure of the pairwise comparisons of Neiâs unbiased genetic distance (below the diagon...

Additional file 2: of Population structure of Venturia inaequalis, a causal agent of apple scab, in response to heterogeneous apple tree cultivation

Monika Michalecka (4783554)
Sylwester Masny (4783557)
Thibault Leroy (3276063)
Joanna Puławska (4589860)

January 2018

Fig. S2. Ancestral proportion of Venturia inaequalis haplotypes for the K = 7 clusters inferred with...

Whole genome sequencing of Venturia pirina enables a comparison of effectomes of two fungal fruit pathogens

Jones, Daniel Frank (14354376)

January 2023

This thesis investigates the genetic basis of infection and host specificity in the fungal pathogen ...

Additional file 1: of Genomic insights into host adaptation between the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici) and the barley stripe rust pathogen (Puccinia striiformis f. sp. hordei)

Chongjing Xia (5744447)
Meinan Wang (75956)
Chuntao Yin (4430260)
Omar Cornejo (5744450)
Scot Hulbert (209380)
Xianming Chen (75957)

September 2018

Figure S1. The 17-mer depth distributions of the Illumina reads used to estimate the genome sizes of...

Additional file 1: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Statistically significant overâ/under-representation of pfam functional annotations between pathog...

Additional file 2: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Information supporting effector prediction, orthology, functional annotations, mutations and PAV acr...

Additional file 1: of Comparative genomics and pathogenicity potential of members of the Pseudomonas syringae species complex on Prunus spp

Michela Ruinelli (6427796)
Jochen Blom (104512)
Theo Smits (4375138)
JoĂŤl Pothier (4375141)

March 2019

This file contains all supplementary tables and figures listed below. Table S1. List of phytotoxins ...

Additional file 18: of Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

Robert King (2499592)
Neil Brown (2170558)
Martin Urban (13910)
Kim Hammond-Kosack (759901)

April 2018

Fusarium graminearum and F. venenatum secretome predictions and respective presence. (XLS 479Â kb

Additional file 6: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Summary of PAV regions spanning 3 or more genes in reference isolates of Botrytis cinerea and Sclero...

Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis, Venturiapirina, Venturia aucupariae and Venturia asperata

LE CAM, Bruno
SARGENT, Dan
GOUZY, Jerome
AMSELEM, Joëlle
BELLANGER, Marie-Noëlle
BOUCHEZ, Olivier
BROWN, Spencer
CAFFIER, Valérie
DE GRACIA COQUEREL, Marie
DEBUCHY, Robert
DUVAUX, Ludovic
PAYEN, Thibaut
SANNIER, Mélanie
SHILLER, Jason
COLLEMARE, Jérôme
LEMAIRE, Christophe

January 2019

The Venturia genus comprises fungal species that are pathogens on Rosaceae host plants, including V....

Population genome sequencing of the scab fungal species Venturia inaequalis, Venturia pirina, Venturia aucupariae and Venturia asperata

Le Cam, Bruno
Sargent, Dan
Gouzy, Jérôme
Amselem, Joëlle
Bellanger, Marie Noëlle
Bouchez, Olivier
Brown, Spencer
Caffier, Valérie
De Gracia, Marie
Debuchy, Robert
Duvaux, Ludovic
Payen, Thibaut
Sannier, Mélanie
Shiller, Jason
Collemare, Jérôme
Lemaire, Christophe

August 2019

The Venturia genus comprises fungal species that are pathogens on Rosaceae host plants, including V....

Additional file 3: of Comparative genomics of plant pathogenic Botrytis species with distinct host specificity

Claudio Valero-JimĂŠnez (3517739)
Javier Veloso (6456413)
Martijn Staats (139441)
Jan Kan (6456416)

March 2019

Number of genes encoding secreted proteins in Botrytis species grouped by GO annotation for the Biol...

Additional file 5: of Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range

Cecilia Deng (546631)
Kim Plummer (3995561)
Darcy Jones (3995579)
Carl Mesarich (728498)
Jason Shiller (3995558)
Adam Taranto (3995576)
Andrew Robinson (19205)
Patrick Kastner (3995573)
Nathan Hall (3995570)
Matthew Templeton (3995564)
Joanna Bowen (3995567)

May 2017

Benchmarking Universal Single-Copy Orthologs (BUSCO_v1.1b) analysis of the Venturia inaequalis and V...

Additional file 10: of Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range

Cecilia Deng (546631)
Kim Plummer (3995561)
Darcy Jones (3995579)
Carl Mesarich (728498)
Jason Shiller (3995558)
Adam Taranto (3995576)
Andrew Robinson (19205)
Patrick Kastner (3995573)
Nathan Hall (3995570)
Matthew Templeton (3995564)
Joanna Bowen (3995567)

May 2017

Summary of distribution of similar proteins with CAZyme domains encoded by the Venturia secretomes. ...

Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range

Deng, Cecilia H.
Jones, Darcy A. B.
Mesarich, Carl H.
Shiller, Jason
Taranto, Adam P.
Robinson, Andrew J.
Kastner, Patrick
Hall, Nathan E.
Templeton, Matthew D.
Bowen, Joanna K.

January 2017

Background: Fungal plant pathogens belonging to the genus Venturia cause damaging scab diseases of m...

Additional file 4: of Population structure of Venturia inaequalis, a causal agent of apple scab, in response to heterogeneous apple tree cultivation

Monika Michalecka (4783554)
Sylwester Masny (4783557)
Thibault Leroy (3276063)
Joanna PuĹawska (4783578)

January 2018

Table S1. Measure of the pairwise comparisons of Neiâs unbiased genetic distance (below the diagon...

Additional file 2: of Population structure of Venturia inaequalis, a causal agent of apple scab, in response to heterogeneous apple tree cultivation

Monika Michalecka (4783554)
Sylwester Masny (4783557)
Thibault Leroy (3276063)
Joanna Puławska (4589860)

January 2018

Fig. S2. Ancestral proportion of Venturia inaequalis haplotypes for the K = 7 clusters inferred with...

Whole genome sequencing of Venturia pirina enables a comparison of effectomes of two fungal fruit pathogens

Jones, Daniel Frank (14354376)

January 2023

This thesis investigates the genetic basis of infection and host specificity in the fungal pathogen ...

Additional file 1: of Genomic insights into host adaptation between the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici) and the barley stripe rust pathogen (Puccinia striiformis f. sp. hordei)

Chongjing Xia (5744447)
Meinan Wang (75956)
Chuntao Yin (4430260)
Omar Cornejo (5744450)
Scot Hulbert (209380)
Xianming Chen (75957)

September 2018

Figure S1. The 17-mer depth distributions of the Illumina reads used to estimate the genome sizes of...

Additional file 1: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Statistically significant overâ/under-representation of pfam functional annotations between pathog...

Additional file 2: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Information supporting effector prediction, orthology, functional annotations, mutations and PAV acr...

Additional file 1: of Comparative genomics and pathogenicity potential of members of the Pseudomonas syringae species complex on Prunus spp

Michela Ruinelli (6427796)
Jochen Blom (104512)
Theo Smits (4375138)
JoĂŤl Pothier (4375141)

March 2019

This file contains all supplementary tables and figures listed below. Table S1. List of phytotoxins ...

Additional file 18: of Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

Robert King (2499592)
Neil Brown (2170558)
Martin Urban (13910)
Kim Hammond-Kosack (759901)

April 2018

Fusarium graminearum and F. venenatum secretome predictions and respective presence. (XLS 479Â kb

Additional file 6: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Summary of PAV regions spanning 3 or more genes in reference isolates of Botrytis cinerea and Sclero...

Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis, Venturiapirina, Venturia aucupariae and Venturia asperata

LE CAM, Bruno
SARGENT, Dan
GOUZY, Jerome
AMSELEM, Joëlle
BELLANGER, Marie-Noëlle
BOUCHEZ, Olivier
BROWN, Spencer
CAFFIER, Valérie
DE GRACIA COQUEREL, Marie
DEBUCHY, Robert
DUVAUX, Ludovic
PAYEN, Thibaut
SANNIER, Mélanie
SHILLER, Jason
COLLEMARE, Jérôme
LEMAIRE, Christophe

January 2019

The Venturia genus comprises fungal species that are pathogens on Rosaceae host plants, including V....

Population genome sequencing of the scab fungal species Venturia inaequalis, Venturia pirina, Venturia aucupariae and Venturia asperata

Le Cam, Bruno
Sargent, Dan
Gouzy, Jérôme
Amselem, Joëlle
Bellanger, Marie Noëlle
Bouchez, Olivier
Brown, Spencer
Caffier, Valérie
De Gracia, Marie
Debuchy, Robert
Duvaux, Ludovic
Payen, Thibaut
Sannier, Mélanie
Shiller, Jason
Collemare, Jérôme
Lemaire, Christophe

August 2019

The Venturia genus comprises fungal species that are pathogens on Rosaceae host plants, including V....

Additional file 3: of Comparative genomics of plant pathogenic Botrytis species with distinct host specificity

Claudio Valero-JimĂŠnez (3517739)
Javier Veloso (6456413)
Martijn Staats (139441)
Jan Kan (6456416)

March 2019

Number of genes encoding secreted proteins in Botrytis species grouped by GO annotation for the Biol...

Additional file 1: of Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range

Abstract

Extracted data

Additional file 1: of Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range

Abstract

Extracted data

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