<p>Metrics from running six compression programs, namely brotli, bzip2, gzip, 7z, xz and zstd, on the human genome from the Human Genome project, in 2bit binary format. For each program, the dataset records</p><ol><li>the time it takes to compress the data, in seconds,</li><li>the resulting compressed size, in bytes,</li><li>the time it takes to decompress the data, in seconds, and</li><li>peak memory usage, in kilobytes.</li></ol><div>Timings are for an Amazon Web Services m3.medium instance.<br></div
Summary: The number of human genomes that have been sequenced completely for different individuals h...
<p>Time comparison among different software for densest genomic models tested in the study.</p
<p>Computational time is depicted as a function of genome size when setting the sample size to 50, a...
<p>Note: The minimum match length in the first pass is set to 25 in this experiment. The unit of ti...
Data for https://bioinformatics.stackexchange.com/questions/12824/theoretical-limit-of-human-genome-...
Over the past few years the amount of digital memory and network traffic used by sequenced biologica...
<p>SRR003177 is 1.5 M human sequences of variable length (avg 564 bp); SRR07215_1 is 4.7 M human seq...
The increase in memory and in network traffic used and caused by new sequenced biological data has r...
abstract: With the rising data output and falling costs of Next Generation Sequencing technologies, ...
<p>We explore the use of BWTs to store and compress the<br>raw sequencing reads of 26 human populati...
<p>The original sequence alphabets have been preserved. The size of the alphabet in the target seque...
• Assemble a human genome in approx. 1 hr. The standard benchmark human set is 6 billion pair reads ...
<p>Storage efficiency is calculated as the ratio of the size of compressed data with each method (H,...
<p>Note: Values in each column (except for Size and ) refer to bits per base (bpb). ‘*’ indicates th...
Abstract:- NP3 is a nucleotide database compression algorithm which takes advantage of the redundanc...
Summary: The number of human genomes that have been sequenced completely for different individuals h...
<p>Time comparison among different software for densest genomic models tested in the study.</p
<p>Computational time is depicted as a function of genome size when setting the sample size to 50, a...
<p>Note: The minimum match length in the first pass is set to 25 in this experiment. The unit of ti...
Data for https://bioinformatics.stackexchange.com/questions/12824/theoretical-limit-of-human-genome-...
Over the past few years the amount of digital memory and network traffic used by sequenced biologica...
<p>SRR003177 is 1.5 M human sequences of variable length (avg 564 bp); SRR07215_1 is 4.7 M human seq...
The increase in memory and in network traffic used and caused by new sequenced biological data has r...
abstract: With the rising data output and falling costs of Next Generation Sequencing technologies, ...
<p>We explore the use of BWTs to store and compress the<br>raw sequencing reads of 26 human populati...
<p>The original sequence alphabets have been preserved. The size of the alphabet in the target seque...
• Assemble a human genome in approx. 1 hr. The standard benchmark human set is 6 billion pair reads ...
<p>Storage efficiency is calculated as the ratio of the size of compressed data with each method (H,...
<p>Note: Values in each column (except for Size and ) refer to bits per base (bpb). ‘*’ indicates th...
Abstract:- NP3 is a nucleotide database compression algorithm which takes advantage of the redundanc...
Summary: The number of human genomes that have been sequenced completely for different individuals h...
<p>Time comparison among different software for densest genomic models tested in the study.</p
<p>Computational time is depicted as a function of genome size when setting the sample size to 50, a...