<p>In a) the whole protein-ATP complex is shown. In b-d) the initial binding site structures for the freely distributed Mg<sup>2+</sup> case, the MgATP:Oα/Oβ and MgATP:Oβ/Oγ coordination are shown, respectively. Water molecules coordinating the Mg<sup>2+</sup> ion and residues coordinating ATP are shown in licorice, while the Mg<sup>2+</sup> ion is shown in VdW spheres.</p
<p>The arrangement of non-deep-sea fish actins (A) and deep-sea fish actins (B). Green spheres show ...
The aims of this thesis are to simulate the dynamics of F1-ATPase and related molecular motors and t...
An unconstrained simulation of the GTP−bound form of the H−ras protein p21 is performed in an aqueou...
The coordination of Mg 2+ with the triphosphate group of adenosine triphosphate (ATP) in motor prote...
<p>Side view of NBD1 (gold) and the superimposed NBD2 (silver) the central conformation from A) Run ...
Recent experiments suggested that ATP can effectively stabilize protein structure and inhibit protei...
<p>(A) The three ATP binding sites found by docking and molecular dynamics are indicated by gray sha...
International audienceDi- and tri-phosphate nucleotides are essential cofactors for many proteins, u...
The conformational equilibria of MgATP in solution is studied using molecular dynamics (MD) augmente...
<div><p>(A) F<sub>o</sub>-F<sub>c</sub> electron density of the active site of protein chain B befor...
<p>The critical amino acids involved in ATP binding are highlighted in bold font.</p
The molecular mechanisms of membrane proteins that are activated either by ions or by ATP are just b...
International audienceThe association of Mg2+ and H2PO4− in water can give insights into Mg:phosphat...
<p>In (A) the key ligand 2-oxolutarate requires the presence of ATP for binding and is located at th...
International audienceWe present here a structural analysis of ten extensive all-atom molecular dyna...
<p>The arrangement of non-deep-sea fish actins (A) and deep-sea fish actins (B). Green spheres show ...
The aims of this thesis are to simulate the dynamics of F1-ATPase and related molecular motors and t...
An unconstrained simulation of the GTP−bound form of the H−ras protein p21 is performed in an aqueou...
The coordination of Mg 2+ with the triphosphate group of adenosine triphosphate (ATP) in motor prote...
<p>Side view of NBD1 (gold) and the superimposed NBD2 (silver) the central conformation from A) Run ...
Recent experiments suggested that ATP can effectively stabilize protein structure and inhibit protei...
<p>(A) The three ATP binding sites found by docking and molecular dynamics are indicated by gray sha...
International audienceDi- and tri-phosphate nucleotides are essential cofactors for many proteins, u...
The conformational equilibria of MgATP in solution is studied using molecular dynamics (MD) augmente...
<div><p>(A) F<sub>o</sub>-F<sub>c</sub> electron density of the active site of protein chain B befor...
<p>The critical amino acids involved in ATP binding are highlighted in bold font.</p
The molecular mechanisms of membrane proteins that are activated either by ions or by ATP are just b...
International audienceThe association of Mg2+ and H2PO4− in water can give insights into Mg:phosphat...
<p>In (A) the key ligand 2-oxolutarate requires the presence of ATP for binding and is located at th...
International audienceWe present here a structural analysis of ten extensive all-atom molecular dyna...
<p>The arrangement of non-deep-sea fish actins (A) and deep-sea fish actins (B). Green spheres show ...
The aims of this thesis are to simulate the dynamics of F1-ATPase and related molecular motors and t...
An unconstrained simulation of the GTP−bound form of the H−ras protein p21 is performed in an aqueou...