Additional file 5: of Biological mechanisms discriminating growth rate and adult body weight phenotypes in two Chinese indigenous chicken breeds

Additional file 2: of Quantitative trait loci identified for blood chemistry components of an advanced intercross line of chickens under heat stress

Angelica Van Goor (3569357)
Christopher Ashwell (3569354)
Michael Persia (3569348)
Max Rothschild (3569351)
Carl Schmidt (3159513)
Susan Lamont (340168)

April 2016

Phenotypic data for blood chemistry components in 468 advanced intercross line chickens.Â (XLSX 123Â...

Additional file 1 of Weighted gene co-expression network analysis identified hub genes critical to fatty acid composition in Gushi chicken breast muscle

Bin Zhai (630466)
Yinli Zhao (7549589)
Hongtai Li (4669045)
Shuaihao Li (11876027)
Jinxing Gu (7828310)
Hongyuan Zhang (2358817)
Yanhua Zhang (356457)
Hong Li (20183)
Yadong Tian (3580121)
Guoxi Li (63063)
Yongcai Wang (16523067)

October 2023

Additional file 1: Table S1. The phenotypic value associated with FA composition in Gushi chicken br...

Additional file 1 of Weighted gene co-expression network analysis identified hub genes critical to fatty acid composition in Gushi chicken breast muscle

Bin Zhai (630466)
Yinli Zhao (7549589)
Hongtai Li (4669045)
Shuaihao Li (11876027)
Jinxing Gu (7828310)
Hongyuan Zhang (2358817)
Yanhua Zhang (356457)
Hong Li (20183)
Yadong Tian (3580121)
Guoxi Li (63063)
Yongcai Wang (16523067)

October 2023

Additional file 1: Table S1. The phenotypic value associated with FA composition in Gushi chicken br...

Additional file 3: of Biological mechanisms discriminating growth rate and adult body weight phenotypes in two Chinese indigenous chicken breeds

Tengfei Dou (4163974)
Sumei Zhao (4163986)
Hua Rong (4163989)
Dahai Gu (4163980)
Qihua Li (4163977)
Ying Huang (53474)
Zhiqiang Xu (103072)
Xiaohui Chu (4163968)
Linli Tao (4163992)
Lixian Liu (4163995)
Changrong Ge (213754)
Marinus Pas (4163983)
Junjing Jia (4163971)

June 2017

DAVID, Cytoscape (Reactome-FI and ClueGo), and String analysis for genes displaying increased expres...

Additional file 4: of Biological mechanisms discriminating growth rate and adult body weight phenotypes in two Chinese indigenous chicken breeds

Tengfei Dou (4163974)
Sumei Zhao (4163986)
Hua Rong (4163989)
Dahai Gu (4163980)
Qihua Li (4163977)
Ying Huang (53474)
Zhiqiang Xu (103072)
Xiaohui Chu (4163968)
Linli Tao (4163992)
Lixian Liu (4163995)
Changrong Ge (213754)
Marinus Pas (4163983)
Junjing Jia (4163971)

June 2017

DAVID, Cytoscape (Reactome-FI and ClueGo), and String analysis for genes displaying increased expres...

Additional file 2: of Biological mechanisms discriminating growth rate and adult body weight phenotypes in two Chinese indigenous chicken breeds

Tengfei Dou (4163974)
Sumei Zhao (4163986)
Hua Rong (4163989)
Dahai Gu (4163980)
Qihua Li (4163977)
Ying Huang (53474)
Zhiqiang Xu (103072)
Xiaohui Chu (4163968)
Linli Tao (4163992)
Lixian Liu (4163995)
Changrong Ge (213754)
Marinus Pas (4163983)
Junjing Jia (4163971)

June 2017

The microarray hybridization data for the liver tissue. The file shows the liver tissue microarray d...

Additional file 1 of Comparative analyses of dynamic transcriptome profiles highlight key response genes and dominant isoforms for muscle development and growth in chicken

Zhang Wang (17273305)
Weihua Tian (564079)
Dandan Wang (286632)
Yulong Guo (516278)
Zhimin Cheng (8558712)
Yanyan Zhang (1462111)
Xinyan Li (778577)
Yihao Zhi (11764901)
Donghua Li (298053)
Zhuanjian Li (108072)
Ruirui Jiang (5090348)
Guoxi Li (63063)
Yadong Tian (3580121)
Xiangtao Kang (3580112)
Hong Li (20183)
Ian C. Dunn (3259974)
Xiaojun Liu (58952)

October 2023

Additional file 1: Table S1. Information on the primer sequences used in this study

Additional file 1 of Comparative analyses of dynamic transcriptome profiles highlight key response genes and dominant isoforms for muscle development and growth in chicken

Zhang Wang (17273305)
Weihua Tian (564079)
Dandan Wang (286632)
Yulong Guo (516278)
Zhimin Cheng (8558712)
Yanyan Zhang (1462111)
Xinyan Li (778577)
Yihao Zhi (11764901)
Donghua Li (298053)
Zhuanjian Li (108072)
Ruirui Jiang (5090348)
Guoxi Li (63063)
Yadong Tian (3580121)
Xiangtao Kang (3580112)
Hong Li (20183)
Ian C. Dunn (3259974)
Xiaojun Liu (58952)

October 2023

Additional file 1: Table S1. Information on the primer sequences used in this study

Additional file 1: of RNA sequencing for global gene expression associated with muscle growth in a single male modern broiler line compared to a foundational Barred Plymouth Rock chicken line

Byung-Whi Kong (77322)
Nicholas Hudson (3577538)
Dongwon Seo (3638350)
Seok Lee (561348)
Bhuwan Khatri (3638344)
Kentu Lassiter (658235)
Devin Cook (3638347)
Alissa Piekarski (658233)
Sami Dridi (360802)
Nicholas Anthony (658237)
Walter Bottje (658238)

January 2017

Primers used for qRT-PCR. The first column indicates primer names and the second column shows sequen...

Additional file 2: of Population genomics identifies patterns of genetic diversity and selection in chicken

Diyan Li (832154)
Yan Li (23143)
Miao Li (337830)
Tiandong Che (3526739)
Shilin Tian (3526709)
Binlong Chen (2225482)
Xuming Zhou (335228)
Guolong Zhang (298643)
Uma Gaur (3797884)
Majing Luo (417989)
Kai Tian (556964)
Mengnan He (3818365)
Shen He (480549)
Zhongxian Xu (3859075)
Long Jin (112089)
Qianzi Tang (785396)
Yifei Dai (6085385)
Huailiang Xu (519105)
Yaodong Hu (404146)
Xiaoling Zhao (3286410)
Huadong Yin (832156)
Yan Wang (15435)
Rongjia Zhou (164123)
Chaowu Yang (4966798)
Huarui Du (4989830)
Xiaosong Jiang (4989821)
Qing Zhu (349093)
Mingzhou Li (112100)

April 2019

Lists of information containing all the positively selected genes in chicken breeds. (XLSX 1018 kb

Additional file 3 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 3: Figure S2. Hierarchical clustering dendrogram of the traits analyzed

Additional file 5 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 5: Figure S3. Quantile–quantile (QQ) plot of the association analysis for breast mus...

Biological mechanisms discriminating growth rate and adult body weight phenotypes in two Chinese indigenous chicken breeds

Dou, Tengfei
Zhao, Sumei
Rong, Hua
Gu, Dahai
Li, Qihua
Huang, Ying
Xu, Zhiqiang
Chu, Xiaohui
Tao, Linli
Liu, Lixian
Ge, Changrong
Pas, Marinus F.W., te
Jia, Junjing

January 2017

Background: Intensive selection has resulted in increased growth rates and muscularity in broiler ch...

Additional file 8 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 8: Table S4. GO terms enriched in the WGCNA modules correlated with breast muscle we...

Additional file 1 of Weighted gene co-expression network analysis identified hub genes critical to fatty acid composition in Gushi chicken breast muscle

Bin Zhai (630466)
Yinli Zhao (7549589)
Hongtai Li (4669045)
Shuaihao Li (11876027)
Jinxing Gu (7828310)
Hongyuan Zhang (2358817)
Yanhua Zhang (356457)
Hong Li (20183)
Yadong Tian (3580121)
Guoxi Li (63063)
Yongcai Wang (16523067)

October 2023

Additional file 1: Table S1. The phenotypic value associated with FA composition in Gushi chicken br...

Additional file 2: of Quantitative trait loci identified for blood chemistry components of an advanced intercross line of chickens under heat stress

Angelica Van Goor (3569357)
Christopher Ashwell (3569354)
Michael Persia (3569348)
Max Rothschild (3569351)
Carl Schmidt (3159513)
Susan Lamont (340168)

April 2016

Phenotypic data for blood chemistry components in 468 advanced intercross line chickens.Â (XLSX 123Â...

Additional file 1 of Weighted gene co-expression network analysis identified hub genes critical to fatty acid composition in Gushi chicken breast muscle

Bin Zhai (630466)
Yinli Zhao (7549589)
Hongtai Li (4669045)
Shuaihao Li (11876027)
Jinxing Gu (7828310)
Hongyuan Zhang (2358817)
Yanhua Zhang (356457)
Hong Li (20183)
Yadong Tian (3580121)
Guoxi Li (63063)
Yongcai Wang (16523067)

October 2023

Additional file 1: Table S1. The phenotypic value associated with FA composition in Gushi chicken br...

Additional file 1 of Weighted gene co-expression network analysis identified hub genes critical to fatty acid composition in Gushi chicken breast muscle

Bin Zhai (630466)
Yinli Zhao (7549589)
Hongtai Li (4669045)
Shuaihao Li (11876027)
Jinxing Gu (7828310)
Hongyuan Zhang (2358817)
Yanhua Zhang (356457)
Hong Li (20183)
Yadong Tian (3580121)
Guoxi Li (63063)
Yongcai Wang (16523067)

October 2023

Additional file 1: Table S1. The phenotypic value associated with FA composition in Gushi chicken br...

Additional file 3: of Biological mechanisms discriminating growth rate and adult body weight phenotypes in two Chinese indigenous chicken breeds

Tengfei Dou (4163974)
Sumei Zhao (4163986)
Hua Rong (4163989)
Dahai Gu (4163980)
Qihua Li (4163977)
Ying Huang (53474)
Zhiqiang Xu (103072)
Xiaohui Chu (4163968)
Linli Tao (4163992)
Lixian Liu (4163995)
Changrong Ge (213754)
Marinus Pas (4163983)
Junjing Jia (4163971)

June 2017

DAVID, Cytoscape (Reactome-FI and ClueGo), and String analysis for genes displaying increased expres...

Additional file 4: of Biological mechanisms discriminating growth rate and adult body weight phenotypes in two Chinese indigenous chicken breeds

Tengfei Dou (4163974)
Sumei Zhao (4163986)
Hua Rong (4163989)
Dahai Gu (4163980)
Qihua Li (4163977)
Ying Huang (53474)
Zhiqiang Xu (103072)
Xiaohui Chu (4163968)
Linli Tao (4163992)
Lixian Liu (4163995)
Changrong Ge (213754)
Marinus Pas (4163983)
Junjing Jia (4163971)

June 2017

DAVID, Cytoscape (Reactome-FI and ClueGo), and String analysis for genes displaying increased expres...

Additional file 2: of Biological mechanisms discriminating growth rate and adult body weight phenotypes in two Chinese indigenous chicken breeds

Tengfei Dou (4163974)
Sumei Zhao (4163986)
Hua Rong (4163989)
Dahai Gu (4163980)
Qihua Li (4163977)
Ying Huang (53474)
Zhiqiang Xu (103072)
Xiaohui Chu (4163968)
Linli Tao (4163992)
Lixian Liu (4163995)
Changrong Ge (213754)
Marinus Pas (4163983)
Junjing Jia (4163971)

June 2017

The microarray hybridization data for the liver tissue. The file shows the liver tissue microarray d...

Additional file 1 of Comparative analyses of dynamic transcriptome profiles highlight key response genes and dominant isoforms for muscle development and growth in chicken

Zhang Wang (17273305)
Weihua Tian (564079)
Dandan Wang (286632)
Yulong Guo (516278)
Zhimin Cheng (8558712)
Yanyan Zhang (1462111)
Xinyan Li (778577)
Yihao Zhi (11764901)
Donghua Li (298053)
Zhuanjian Li (108072)
Ruirui Jiang (5090348)
Guoxi Li (63063)
Yadong Tian (3580121)
Xiangtao Kang (3580112)
Hong Li (20183)
Ian C. Dunn (3259974)
Xiaojun Liu (58952)

October 2023

Additional file 1: Table S1. Information on the primer sequences used in this study

Additional file 1 of Comparative analyses of dynamic transcriptome profiles highlight key response genes and dominant isoforms for muscle development and growth in chicken

Zhang Wang (17273305)
Weihua Tian (564079)
Dandan Wang (286632)
Yulong Guo (516278)
Zhimin Cheng (8558712)
Yanyan Zhang (1462111)
Xinyan Li (778577)
Yihao Zhi (11764901)
Donghua Li (298053)
Zhuanjian Li (108072)
Ruirui Jiang (5090348)
Guoxi Li (63063)
Yadong Tian (3580121)
Xiangtao Kang (3580112)
Hong Li (20183)
Ian C. Dunn (3259974)
Xiaojun Liu (58952)

October 2023

Additional file 1: Table S1. Information on the primer sequences used in this study

Additional file 1: of RNA sequencing for global gene expression associated with muscle growth in a single male modern broiler line compared to a foundational Barred Plymouth Rock chicken line

Byung-Whi Kong (77322)
Nicholas Hudson (3577538)
Dongwon Seo (3638350)
Seok Lee (561348)
Bhuwan Khatri (3638344)
Kentu Lassiter (658235)
Devin Cook (3638347)
Alissa Piekarski (658233)
Sami Dridi (360802)
Nicholas Anthony (658237)
Walter Bottje (658238)

January 2017

Primers used for qRT-PCR. The first column indicates primer names and the second column shows sequen...

Additional file 2: of Population genomics identifies patterns of genetic diversity and selection in chicken

Diyan Li (832154)
Yan Li (23143)
Miao Li (337830)
Tiandong Che (3526739)
Shilin Tian (3526709)
Binlong Chen (2225482)
Xuming Zhou (335228)
Guolong Zhang (298643)
Uma Gaur (3797884)
Majing Luo (417989)
Kai Tian (556964)
Mengnan He (3818365)
Shen He (480549)
Zhongxian Xu (3859075)
Long Jin (112089)
Qianzi Tang (785396)
Yifei Dai (6085385)
Huailiang Xu (519105)
Yaodong Hu (404146)
Xiaoling Zhao (3286410)
Huadong Yin (832156)
Yan Wang (15435)
Rongjia Zhou (164123)
Chaowu Yang (4966798)
Huarui Du (4989830)
Xiaosong Jiang (4989821)
Qing Zhu (349093)
Mingzhou Li (112100)

April 2019

Lists of information containing all the positively selected genes in chicken breeds. (XLSX 1018 kb

Additional file 3 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 3: Figure S2. Hierarchical clustering dendrogram of the traits analyzed

Additional file 5 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 5: Figure S3. Quantile–quantile (QQ) plot of the association analysis for breast mus...

Biological mechanisms discriminating growth rate and adult body weight phenotypes in two Chinese indigenous chicken breeds

Dou, Tengfei
Zhao, Sumei
Rong, Hua
Gu, Dahai
Li, Qihua
Huang, Ying
Xu, Zhiqiang
Chu, Xiaohui
Tao, Linli
Liu, Lixian
Ge, Changrong
Pas, Marinus F.W., te
Jia, Junjing

January 2017

Background: Intensive selection has resulted in increased growth rates and muscularity in broiler ch...

Additional file 8 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 8: Table S4. GO terms enriched in the WGCNA modules correlated with breast muscle we...

Additional file 1 of Weighted gene co-expression network analysis identified hub genes critical to fatty acid composition in Gushi chicken breast muscle

Bin Zhai (630466)
Yinli Zhao (7549589)
Hongtai Li (4669045)
Shuaihao Li (11876027)
Jinxing Gu (7828310)
Hongyuan Zhang (2358817)
Yanhua Zhang (356457)
Hong Li (20183)
Yadong Tian (3580121)
Guoxi Li (63063)
Yongcai Wang (16523067)

October 2023

Additional file 1: Table S1. The phenotypic value associated with FA composition in Gushi chicken br...

Additional file 2: of Quantitative trait loci identified for blood chemistry components of an advanced intercross line of chickens under heat stress

Angelica Van Goor (3569357)
Christopher Ashwell (3569354)
Michael Persia (3569348)
Max Rothschild (3569351)
Carl Schmidt (3159513)
Susan Lamont (340168)

April 2016

Phenotypic data for blood chemistry components in 468 advanced intercross line chickens.Â (XLSX 123Â...

Additional file 1 of Weighted gene co-expression network analysis identified hub genes critical to fatty acid composition in Gushi chicken breast muscle

Bin Zhai (630466)
Yinli Zhao (7549589)
Hongtai Li (4669045)
Shuaihao Li (11876027)
Jinxing Gu (7828310)
Hongyuan Zhang (2358817)
Yanhua Zhang (356457)
Hong Li (20183)
Yadong Tian (3580121)
Guoxi Li (63063)
Yongcai Wang (16523067)

October 2023

Additional file 1: Table S1. The phenotypic value associated with FA composition in Gushi chicken br...

Additional file 1 of Weighted gene co-expression network analysis identified hub genes critical to fatty acid composition in Gushi chicken breast muscle

Bin Zhai (630466)
Yinli Zhao (7549589)
Hongtai Li (4669045)
Shuaihao Li (11876027)
Jinxing Gu (7828310)
Hongyuan Zhang (2358817)
Yanhua Zhang (356457)
Hong Li (20183)
Yadong Tian (3580121)
Guoxi Li (63063)
Yongcai Wang (16523067)

October 2023

Additional file 1: Table S1. The phenotypic value associated with FA composition in Gushi chicken br...

Additional file 5: of Biological mechanisms discriminating growth rate and adult body weight phenotypes in two Chinese indigenous chicken breeds

Abstract

Extracted data

Additional file 5: of Biological mechanisms discriminating growth rate and adult body weight phenotypes in two Chinese indigenous chicken breeds

Abstract

Extracted data

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