Plots of dispersion estimates of all ribeye area and backfat thickness genes. The black dots are the dispersion estimates of the empirical values of each gene; the red line represents the trend line; the blue dots represent the genes estimates regressed through the trend line used in the hypothesis test; and the blue circles above the “cloud” of points are genes which have high gene-wise dispersion estimates which are labelled as dispersion outliers, and will not be used in the hypothesis test. (PDF 110 kb
Table S1 and S2. Multiple testing corrections for the module trait relationship using Benjamini-Hoch...
Table S3. Functional enrichment analysis from the gene list of the Salmon module, performed by DAVID...
Normalized gene expression level and statistical results of differentially expressed genes analysis ...
Table S1. Test of means (t-test) of backfat thickness (BFT) and ribeye area (REA) between groups wit...
Differentially expressed genes obtained between high and low genomic breeding value groups for backf...
Test of means (t-test) of intramuscular fat (IMF), backfat thickness (BFT) and ribeye area (REA) bet...
Differentially expressed genes obtained between high and low genomic breeding value groups for ribey...
Pearsonâs correlation coefficients between estimated breeding values and adjusted phenotypes and r...
Figure S1. Heatmap plot of the gene network using a subset of 400 genes. The heatmap plot depicts th...
Table S5. Gene list from the Ivory module. The table contains the Ensembl gene identification, gene ...
Boxplot of the transcript abundance distribution for each beef fatty acid and gene expressed. (PDF 4...
Table S6. Gene list from the Light Yellow module. The table contains the Ensembl gene identification...
Table S2. Functional enrichment analysis from the gene list of the Green Yellow module, performed by...
Tajima’s D and FST plot of positively selected gene regions in Sanga and indicus cattle populations....
Correlogram highlighting the correlation between all adipose tissue candidate genes from adipose tis...
Table S1 and S2. Multiple testing corrections for the module trait relationship using Benjamini-Hoch...
Table S3. Functional enrichment analysis from the gene list of the Salmon module, performed by DAVID...
Normalized gene expression level and statistical results of differentially expressed genes analysis ...
Table S1. Test of means (t-test) of backfat thickness (BFT) and ribeye area (REA) between groups wit...
Differentially expressed genes obtained between high and low genomic breeding value groups for backf...
Test of means (t-test) of intramuscular fat (IMF), backfat thickness (BFT) and ribeye area (REA) bet...
Differentially expressed genes obtained between high and low genomic breeding value groups for ribey...
Pearsonâs correlation coefficients between estimated breeding values and adjusted phenotypes and r...
Figure S1. Heatmap plot of the gene network using a subset of 400 genes. The heatmap plot depicts th...
Table S5. Gene list from the Ivory module. The table contains the Ensembl gene identification, gene ...
Boxplot of the transcript abundance distribution for each beef fatty acid and gene expressed. (PDF 4...
Table S6. Gene list from the Light Yellow module. The table contains the Ensembl gene identification...
Table S2. Functional enrichment analysis from the gene list of the Green Yellow module, performed by...
Tajima’s D and FST plot of positively selected gene regions in Sanga and indicus cattle populations....
Correlogram highlighting the correlation between all adipose tissue candidate genes from adipose tis...
Table S1 and S2. Multiple testing corrections for the module trait relationship using Benjamini-Hoch...
Table S3. Functional enrichment analysis from the gene list of the Salmon module, performed by DAVID...
Normalized gene expression level and statistical results of differentially expressed genes analysis ...