Supplementary tables. List of all editing predictions in FB4_DM, DNAREP1_DM and PROTOP along with sequences for the rdgA clones. (XLSX 1,065 kb
Measured versus expected log2 fold-changes between samples C and D for the shortest 25% genes from e...
Prediction of RNA editing using the BLASTX prediction mode of PREPACT exemplarily shown for the Ambo...
The eukaryotic transcriptome is further diversified by post-transcriptional processing, including al...
Supplementary results. Descriptions of TE families with 1000 or more edit sites. (PDF 32 kb
Alignment prediction output. An example for the output of a multiple-query alignment for different r...
Multiple sequence input. An example for multiple query and reference sequence input in PREPACTâs a...
<p><b>(A)</b> Mean conservation (PhastCons) score of hyper-edited sites. Position 0 indicates the po...
Figure S2. RMSD vs RNA structural similarity. SARAscore (A) and RMscore are plotted against RMSD in ...
Table S1. Parameter Settings used for alignment, data pre-processing and variant calling. Table S2. ...
Control dataset sample identification, protocol information, and RNA sequencing stats. Experimental ...
TargetScan of Editing environment. An example illustrating the use of TargetScan to identify nucleot...
Additional Figure 1. Protein-coding gene AUPR plots. Metric prediction performance computed on promo...
Supplemental Table and Figures. Supplemental Table S1 and Figures S1âS7. (PDF 742 kb
RNA editing is vast in some genetic systems, with up to thousands of targeted C-to-U and U-to-C subs...
Strategy employed for determining potential RNA editing sites . The workflow that was followed to fi...
Measured versus expected log2 fold-changes between samples C and D for the shortest 25% genes from e...
Prediction of RNA editing using the BLASTX prediction mode of PREPACT exemplarily shown for the Ambo...
The eukaryotic transcriptome is further diversified by post-transcriptional processing, including al...
Supplementary results. Descriptions of TE families with 1000 or more edit sites. (PDF 32 kb
Alignment prediction output. An example for the output of a multiple-query alignment for different r...
Multiple sequence input. An example for multiple query and reference sequence input in PREPACTâs a...
<p><b>(A)</b> Mean conservation (PhastCons) score of hyper-edited sites. Position 0 indicates the po...
Figure S2. RMSD vs RNA structural similarity. SARAscore (A) and RMscore are plotted against RMSD in ...
Table S1. Parameter Settings used for alignment, data pre-processing and variant calling. Table S2. ...
Control dataset sample identification, protocol information, and RNA sequencing stats. Experimental ...
TargetScan of Editing environment. An example illustrating the use of TargetScan to identify nucleot...
Additional Figure 1. Protein-coding gene AUPR plots. Metric prediction performance computed on promo...
Supplemental Table and Figures. Supplemental Table S1 and Figures S1âS7. (PDF 742 kb
RNA editing is vast in some genetic systems, with up to thousands of targeted C-to-U and U-to-C subs...
Strategy employed for determining potential RNA editing sites . The workflow that was followed to fi...
Measured versus expected log2 fold-changes between samples C and D for the shortest 25% genes from e...
Prediction of RNA editing using the BLASTX prediction mode of PREPACT exemplarily shown for the Ambo...
The eukaryotic transcriptome is further diversified by post-transcriptional processing, including al...
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