Additional file 1: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

Additional file 1: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Christina Rochus (3703267)
Flavie Tortereau (4787103)
Florence Plisson-Petit (4787100)
Gwendal Restoux (214062)
Carole Moreno-Romieux (4787106)
Gwenola Tosser-Klopp (88023)
Bertrand Servin (77573)

January 2018

Cross entropy criterion. Cross entropy criterion for estimating number of ancestral populations in F...

Additional file 2: Table S2. of Development of a SNP panel dedicated to parentage assignment in French sheep populations

F. Tortereau (4051603)
C. Moreno (4051600)
G. Tosser-Klopp (4051606)
B. Servin (4051597)
J. Raoul (4051609)

May 2017

Results (MAF, PE1, PE2 and PI) obtained after random sampling of SNPs from the 249 SNPs selected for...

Additional file 7: Table S6. of Identifying highly informative genetic markers for quantification of ancestry proportions in crossbred sheep populations: implications for choosing optimum levels of admixture

Tesfaye Getachew (4391326)
Heather Huson (485191)
Maria Wurzinger (4391329)
Jörg Burgstaller (4391317)
Solomon Gizaw (4391332)
Aynalem Haile (4391323)
Barbara Rischkowsky (3300732)
Gottfried Brem (398090)
Solomon Boison (3518459)
Gábor Mészáros (413177)
Ally Mwai (4391320)
Johann Sölkner (224465)

August 2017

Least square means ± standand error of Awassi level and reproductive performance for top, medium and...

Additional file 6: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

Vincent Prieur (4265431)
Shannon Clarke (3504989)
Luiz Brito (3664843)
John McEwan (45371)
Michael Lee (353518)
Rudiger Brauning (47247)
Ken Dodds (3501542)
BenoĂŽt Auvray (4265434)

July 2017

Average number of marker pairs available for N e estimation, per generation. The hyperbolic nature o...

Additional file 7: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

Vincent Prieur (4265431)
Shannon Clarke (3504989)
Luiz Brito (3664843)
John McEwan (45371)
Michael Lee (353518)
Rudiger Brauning (47247)
Ken Dodds (3501542)
BenoĂŽt Auvray (4265434)

July 2017

LD decay over genetic distances and evolution of N e over time estimated using the three methods in ...

Additional file 4: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

Vincent Prieur (4265431)
Shannon Clarke (3504989)
Luiz Brito (3664843)
John McEwan (45371)
Michael Lee (353518)
Rudiger Brauning (47247)
Ken Dodds (3501542)
BenoĂŽt Auvray (4265434)

July 2017

OvineExpectedRecombinationRate.txt. This file contains information about physical and expected recom...

Additional file 8: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

Vincent Prieur (4265431)
Shannon Clarke (3504989)
Luiz Brito (3664843)
John McEwan (45371)
Michael Lee (353518)
Rudiger Brauning (47247)
Ken Dodds (3501542)
BenoĂŽt Auvray (4265434)

July 2017

LD decay over genetic distances and evolution of N e over time estimated using the three methods in ...

Additional file 2: of Genetic diversity of a New Zealand multi-breed sheep population and composite breedsâ history revealed by a high-density SNP chip

Luiz Brito (3664843)
John McEwan (45371)
Stephen Miller (2182676)
Natalie Pickering (3501545)
Wendy Bain (3696289)
Ken Dodds (3501542)
FlĂĄvio Schenkel (3688210)
Shannon Clarke (3504989)

March 2017

Average linkage disequilibrium (r2) between adjacent SNP pairs by chromosome and per each sire breed...

Additional file 5: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

Vincent Prieur (4265431)
Shannon Clarke (3504989)
Luiz Brito (3664843)
John McEwan (45371)
Michael Lee (353518)
Rudiger Brauning (47247)
Ken Dodds (3501542)
BenoĂŽt Auvray (4265434)

July 2017

OvineGeneticMap.IMF.txt. This file contains information about physical and genetics positions for th...

MOESM1 of Genome-wide linkage disequilibrium and genetic diversity in five populations of Australian domestic sheep

Hawlader Al-Mamun (3554969)
Samuel Clark (3156474)
Paul Kwan (3554972)
Cedric Gondro (303561)

November 2015

Additional file 1: Table S1. Summary statistics for the SNPs, average minor allele frequency and het...

Additional file 2: of Merino and Merino-derived sheep breeds: a genome-wide intercontinental study

Elena Ciani (185004)
Emiliano Lasagna (456418)
Mariasilvia DâAndrea (3564821)
Ingrid Alloggio (3265857)
Fabio Marroni (73706)
Simone Ceccobelli (456414)
Juan Delgado Bermejo (3564818)
Francesca Sarti (3564815)
James Kijas (216935)
Johannes Lenstra (3564824)
Fabio Pilla (3265863)

August 2015

Figure S1. Distributions of the number of SNPs across frequency bins for all population samples. Bre...

Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

Vincent Prieur
Shannon M. Clarke
Luiz F. Brito
John C. McEwan
Michael A. Lee
Rudiger Brauning
Ken G. Dodds
Benoît Auvray

July 2017

Abstract Background Investments in genetic selection have played a major role in the New Zealand she...

Additional file 2: of Genomic prediction and genome-wide association study for dagginess and host internal parasite resistance in New Zealand sheep

Natalie Pickering (3501545)
Benoit Auvray (2493196)
Ken Dodds (3501542)
John McEwan (45371)

November 2015

Manhatten plot of -log 10 ( P ) values of SNPs for dag score at three months (A) and faecal egg coun...

Additional file 4: of Genomic prediction and genome-wide association study for dagginess and host internal parasite resistance in New Zealand sheep

Natalie Pickering (3501545)
Benoit Auvray (2493196)
Ken Dodds (3501542)
John McEwan (45371)

November 2015

Summary of quantitative trait loci for resistance to internal parasite traits from published papers,...

Additional file 1: of Genetic diversity of Haemonchus contortus isolated from sympatric wild blue sheep (Pseudois nayaur) and sheep in Helan Mountains, China

Dong-dong Shen (4447228)
Ji-fei Wang (4447225)
Dan-yu Zhang (4447222)
Zhi-wei Peng (4447237)
Tian-yun Yang (4447234)
Zhao-ding Wang (4447243)
Dwight Bowman (148481)
Zhi-jun Hou (4447240)
Zhen-sheng Liu (4447231)

September 2017

Figure S1. Phylogenetic tree resulting from Bayesian analysis constructed with 55 nad4 haplotype seq...

Additional file 1: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Christina Rochus (3703267)
Flavie Tortereau (4787103)
Florence Plisson-Petit (4787100)
Gwendal Restoux (214062)
Carole Moreno-Romieux (4787106)
Gwenola Tosser-Klopp (88023)
Bertrand Servin (77573)

January 2018

Cross entropy criterion. Cross entropy criterion for estimating number of ancestral populations in F...

Additional file 2: Table S2. of Development of a SNP panel dedicated to parentage assignment in French sheep populations

F. Tortereau (4051603)
C. Moreno (4051600)
G. Tosser-Klopp (4051606)
B. Servin (4051597)
J. Raoul (4051609)

May 2017

Results (MAF, PE1, PE2 and PI) obtained after random sampling of SNPs from the 249 SNPs selected for...

Additional file 7: Table S6. of Identifying highly informative genetic markers for quantification of ancestry proportions in crossbred sheep populations: implications for choosing optimum levels of admixture

Tesfaye Getachew (4391326)
Heather Huson (485191)
Maria Wurzinger (4391329)
Jörg Burgstaller (4391317)
Solomon Gizaw (4391332)
Aynalem Haile (4391323)
Barbara Rischkowsky (3300732)
Gottfried Brem (398090)
Solomon Boison (3518459)
Gábor Mészáros (413177)
Ally Mwai (4391320)
Johann Sölkner (224465)

August 2017

Least square means ± standand error of Awassi level and reproductive performance for top, medium and...

Additional file 6: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

Vincent Prieur (4265431)
Shannon Clarke (3504989)
Luiz Brito (3664843)
John McEwan (45371)
Michael Lee (353518)
Rudiger Brauning (47247)
Ken Dodds (3501542)
BenoĂŽt Auvray (4265434)

July 2017

Average number of marker pairs available for N e estimation, per generation. The hyperbolic nature o...

Additional file 7: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

Vincent Prieur (4265431)
Shannon Clarke (3504989)
Luiz Brito (3664843)
John McEwan (45371)
Michael Lee (353518)
Rudiger Brauning (47247)
Ken Dodds (3501542)
BenoĂŽt Auvray (4265434)

July 2017

LD decay over genetic distances and evolution of N e over time estimated using the three methods in ...

Additional file 4: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

Vincent Prieur (4265431)
Shannon Clarke (3504989)
Luiz Brito (3664843)
John McEwan (45371)
Michael Lee (353518)
Rudiger Brauning (47247)
Ken Dodds (3501542)
BenoĂŽt Auvray (4265434)

July 2017

OvineExpectedRecombinationRate.txt. This file contains information about physical and expected recom...

Additional file 8: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

Vincent Prieur (4265431)
Shannon Clarke (3504989)
Luiz Brito (3664843)
John McEwan (45371)
Michael Lee (353518)
Rudiger Brauning (47247)
Ken Dodds (3501542)
BenoĂŽt Auvray (4265434)

July 2017

LD decay over genetic distances and evolution of N e over time estimated using the three methods in ...

Additional file 2: of Genetic diversity of a New Zealand multi-breed sheep population and composite breedsâ history revealed by a high-density SNP chip

Luiz Brito (3664843)
John McEwan (45371)
Stephen Miller (2182676)
Natalie Pickering (3501545)
Wendy Bain (3696289)
Ken Dodds (3501542)
FlĂĄvio Schenkel (3688210)
Shannon Clarke (3504989)

March 2017

Average linkage disequilibrium (r2) between adjacent SNP pairs by chromosome and per each sire breed...

Additional file 5: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

Vincent Prieur (4265431)
Shannon Clarke (3504989)
Luiz Brito (3664843)
John McEwan (45371)
Michael Lee (353518)
Rudiger Brauning (47247)
Ken Dodds (3501542)
BenoĂŽt Auvray (4265434)

July 2017

OvineGeneticMap.IMF.txt. This file contains information about physical and genetics positions for th...

MOESM1 of Genome-wide linkage disequilibrium and genetic diversity in five populations of Australian domestic sheep

Hawlader Al-Mamun (3554969)
Samuel Clark (3156474)
Paul Kwan (3554972)
Cedric Gondro (303561)

November 2015

Additional file 1: Table S1. Summary statistics for the SNPs, average minor allele frequency and het...

Additional file 2: of Merino and Merino-derived sheep breeds: a genome-wide intercontinental study

Elena Ciani (185004)
Emiliano Lasagna (456418)
Mariasilvia DâAndrea (3564821)
Ingrid Alloggio (3265857)
Fabio Marroni (73706)
Simone Ceccobelli (456414)
Juan Delgado Bermejo (3564818)
Francesca Sarti (3564815)
James Kijas (216935)
Johannes Lenstra (3564824)
Fabio Pilla (3265863)

August 2015

Figure S1. Distributions of the number of SNPs across frequency bins for all population samples. Bre...

Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

Vincent Prieur
Shannon M. Clarke
Luiz F. Brito
John C. McEwan
Michael A. Lee
Rudiger Brauning
Ken G. Dodds
Benoît Auvray

July 2017

Abstract Background Investments in genetic selection have played a major role in the New Zealand she...

Additional file 2: of Genomic prediction and genome-wide association study for dagginess and host internal parasite resistance in New Zealand sheep

Natalie Pickering (3501545)
Benoit Auvray (2493196)
Ken Dodds (3501542)
John McEwan (45371)

November 2015

Manhatten plot of -log 10 ( P ) values of SNPs for dag score at three months (A) and faecal egg coun...

Additional file 4: of Genomic prediction and genome-wide association study for dagginess and host internal parasite resistance in New Zealand sheep

Natalie Pickering (3501545)
Benoit Auvray (2493196)
Ken Dodds (3501542)
John McEwan (45371)

November 2015

Summary of quantitative trait loci for resistance to internal parasite traits from published papers,...

Additional file 1: of Genetic diversity of Haemonchus contortus isolated from sympatric wild blue sheep (Pseudois nayaur) and sheep in Helan Mountains, China

Dong-dong Shen (4447228)
Ji-fei Wang (4447225)
Dan-yu Zhang (4447222)
Zhi-wei Peng (4447237)
Tian-yun Yang (4447234)
Zhao-ding Wang (4447243)
Dwight Bowman (148481)
Zhi-jun Hou (4447240)
Zhen-sheng Liu (4447231)

September 2017

Figure S1. Phylogenetic tree resulting from Bayesian analysis constructed with 55 nad4 haplotype seq...

Additional file 1: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Christina Rochus (3703267)
Flavie Tortereau (4787103)
Florence Plisson-Petit (4787100)
Gwendal Restoux (214062)
Carole Moreno-Romieux (4787106)
Gwenola Tosser-Klopp (88023)
Bertrand Servin (77573)

January 2018

Cross entropy criterion. Cross entropy criterion for estimating number of ancestral populations in F...

Additional file 2: Table S2. of Development of a SNP panel dedicated to parentage assignment in French sheep populations

F. Tortereau (4051603)
C. Moreno (4051600)
G. Tosser-Klopp (4051606)
B. Servin (4051597)
J. Raoul (4051609)

May 2017

Results (MAF, PE1, PE2 and PI) obtained after random sampling of SNPs from the 249 SNPs selected for...

Additional file 7: Table S6. of Identifying highly informative genetic markers for quantification of ancestry proportions in crossbred sheep populations: implications for choosing optimum levels of admixture

Tesfaye Getachew (4391326)
Heather Huson (485191)
Maria Wurzinger (4391329)
Jörg Burgstaller (4391317)
Solomon Gizaw (4391332)
Aynalem Haile (4391323)
Barbara Rischkowsky (3300732)
Gottfried Brem (398090)
Solomon Boison (3518459)
Gábor Mészáros (413177)
Ally Mwai (4391320)
Johann Sölkner (224465)

August 2017

Least square means ± standand error of Awassi level and reproductive performance for top, medium and...

Additional file 1: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

Abstract

Extracted data

Additional file 1: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

Abstract

Extracted data

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