Additional file 3: Table S1. of New insights into the roles of cucumber TIR1 homologs and miR393 in regulating fruit/seed set development and leaf morphogenesis

Additional file 2: of Identification of a stable major-effect QTL (Parth 2.1) controlling parthenocarpy in cucumber and associated candidate gene analysis via whole genome re-sequencing

Zhe Wu (582498)
Ting Zhang (102583)
Lei Li (29537)
Jian Xu (31545)
Xiaodong Qin (414196)
Tinglin Zhang (3587303)
Li Cui (37567)
Qunfeng Lou (409994)
Ji Li (207201)
Jinfeng Chen (118034)

August 2016

Correlation analysis between PP for the F2:3 families in spring and fall in 2013. Parthenocarpy perc...

Additional file 3: of First RNA-seq approach to study fruit set and parthenocarpy in zucchini (Cucurbita pepo L.)

Teresa Pomares-Viciana (658346)
Mercedes Del Río-Celestino (6309920)
Belén Román (658347)
Jose Die (5151449)
Belén Pico (6309923)
Pedro Gómez (35587)

February 2019

Tables “PF MU16 vs UF MU16” (Ontology terms of protein products for DEGs during pollinated fruit set...

Additional file 3: of Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis glomerata L.)

Guangyan Feng (4436689)
Lei Xu (78676)
Jianping Wang (215292)
Gang Nie (1643194)
Bradley Bushman (5816930)
Wengang Xie (3945377)
Haidong Yan (102955)
Zhongfu Yang (4436686)
Hao Guan (498369)
Linkai Huang (546829)
Xinquan Zhang (546832)

October 2018

Table S11. The primers used for qRT-PCR. Table S12. Targets of miRNAs in the BV stage, VE stage, and...

Additional file 1: Table S1. of The loss-of-function GLABROUS 3 mutation in cucumber is due to LTR-retrotransposon insertion in a class IV HD-ZIP transcription factor gene CsGL3 that is epistatic over CsGL1

Yupeng Pan (1446430)
Kailiang Bo (3486968)
Zhihui Cheng (296359)
Yiqun Weng (128212)

December 2015

Primer information of all markers used in the study for genetic mapping, quantitative real-time PCR,...

Additional file 1: Figure S1. of Expression and functional analysis of the Propamocarb-related gene CsDIR16 in cucumbers

Chunhong Liu (480470)
Zhiwei Qin (840779)
Xiuyan Zhou (4070086)
Ming Xin (3112116)
Chunhua Wang (439592)
Dong Liu (115204)
Shengnan Li (345816)

January 2018

Amino acid sequence alignment of the DIR family from cucumber, Arabidopsis thaliana (At) and Cucumis...

Additional file 3: of Functional characterization of cucumber (Cucumis sativus L.) Clade V MLO genes

Jeroen Berg (3525311)
Michela Appiano (439289)
Gerard Bijsterbosch (3945488)
Richard Visser (3431771)
Henk Schouten (3525314)
Yuling Bai (395623)

April 2017

Relative transcript abundances in two tissues of PM susceptible cucumber cultivar ‘Sheila’ (A) hypoc...

Additional file 10: of Functional characterization of cucumber (Cucumis sativus L.) Clade V MLO genes

Jeroen Berg (3525311)
Michela Appiano (439289)
Gerard Bijsterbosch (3945488)
Richard Visser (3431771)
Henk Schouten (3525314)
Yuling Bai (395623)

April 2017

Intron 6 of CsaMLO1 (A) and intron 12 of CsaMLO11 (D) were amplified from genomic DNA isolated from ...

Additional file 1: of MicroRNAs and their targets in cucumber shoot apices in response to temperature and photoperiod

Xiaohui Zhang (81778)
Yunsong Lai (2557420)
Wei Zhang (405)
Jalil Ahmad (5980487)
Yang Qiu (368797)
Xiaoxue Zhang (1755322)
Mengmeng Duan (3596504)
Tongjin Liu (5980490)
Jiangping Song (413328)
Haiping Wang (318650)
Xixiang Li (128220)

November 2018

Table S1. summary of sRNA sequencing data. Table S2. summary of known miRNAs. Table S3. summary of n...

New insights into the roles of cucumber TIR1 homologs and miR393 in regulating fruit/seed set development and leaf morphogenesis

Jian Xu
Ji Li
Li Cui
Ting Zhang
Zhe Wu
Pin-Yu Zhu
Yong-Jiao Meng
Kai-Jing Zhang
Xia-Qing Yu
Qun-Feng Lou
Jin-Feng Chen

July 2017

Abstract Background TIR1-like proteins act as auxin receptors and play essential roles in auxin-medi...

Additional file 15: of Inferring the regulatory network of the miRNA-mediated response to biotic and abiotic stress in melon

Alejandro Sanz-Carbonell (6374522)
MarĂa Marques (6374525)
Antonio Bustamante (6374528)
Mario Fares (6374531)
Guillermo Rodrigo (53381)
Gustavo Gomez (114453)

February 2019

Table S8. Detail of the primers used for stem-loop qRT-PCR analysis of melon miRNAs. (TIF 14782 kb

Additional file 1: of Comparative transcriptomics reveals suppressed expression of genes related to auxin and the cell cycle contributes to the resistance of cucumber against Meloidogyne incognita

Xing Wang (154377)
Chunyan Cheng (409996)
Kaijing Zhang (5594516)
Zhen Tian (438719)
Jian Xu (31545)
Shuqiong Yang (3455627)
Qunfeng Lou (409994)
Ji Li (207201)
Jin-Feng Chen (4279501)

August 2018

Table S1. The statistics of RNA-seq sequencing data in this study. Rck and Rt represent the control ...

Additional file 3: Figure S1. of The loss-of-function GLABROUS 3 mutation in cucumber is due to LTR-retrotransposon insertion in a class IV HD-ZIP transcription factor gene CsGL3 that is epistatic over CsGL1

Yupeng Pan (1446430)
Kailiang Bo (3486968)
Zhihui Cheng (296359)
Yiqun Weng (128212)

December 2015

Detection of 5005-bp LTR retrotransposon insertion found at the csgl3 allele in natural populations ...

Additional file 2: of MicroRNAs and their targets in cucumber shoot apices in response to temperature and photoperiod

Xiaohui Zhang (81778)
Yunsong Lai (2557420)
Wei Zhang (405)
Jalil Ahmad (5980487)
Yang Qiu (368797)
Xiaoxue Zhang (1755322)
Mengmeng Duan (3596504)
Tongjin Liu (5980490)
Jiangping Song (413328)
Haiping Wang (318650)
Xixiang Li (128220)

November 2018

Figure S1. Length distribution of small RNAs in cucumber shoot tips. Figure S2. Alignment of exons o...

Additional file 2: of Functional characterization of cucumber (Cucumis sativus L.) Clade V MLO genes

Jeroen Berg (3525311)
Michela Appiano (439289)
Gerard Bijsterbosch (3945488)
Richard Visser (3431771)
Henk Schouten (3525314)
Yuling Bai (395623)

April 2017

Data on the transcript abundance in four tissues of Arabidopsis thaliana, determined using RNA-seq w...

Additional file 1: Table S1. of Overexpression of plum auxin receptor PslTIR1 in tomato alters plant growth, fruit development and fruit shelf-life characteristics

I. El-Sharkawy (3457040)
S. Sherif (3457037)
W. El Kayal (3457046)
B. Jones (3457043)
Z. Li (9162)
A. Sullivan (824982)
Subramanian Jayasankar (354387)

February 2016

The oligonucleotide primers. Figure S1. PCR with genomic DNA of potential positive PslTIR1âtransge...

Additional file 2: of Identification of a stable major-effect QTL (Parth 2.1) controlling parthenocarpy in cucumber and associated candidate gene analysis via whole genome re-sequencing

Zhe Wu (582498)
Ting Zhang (102583)
Lei Li (29537)
Jian Xu (31545)
Xiaodong Qin (414196)
Tinglin Zhang (3587303)
Li Cui (37567)
Qunfeng Lou (409994)
Ji Li (207201)
Jinfeng Chen (118034)

August 2016

Correlation analysis between PP for the F2:3 families in spring and fall in 2013. Parthenocarpy perc...

Additional file 3: of First RNA-seq approach to study fruit set and parthenocarpy in zucchini (Cucurbita pepo L.)

Teresa Pomares-Viciana (658346)
Mercedes Del Río-Celestino (6309920)
Belén Román (658347)
Jose Die (5151449)
Belén Pico (6309923)
Pedro Gómez (35587)

February 2019

Tables “PF MU16 vs UF MU16” (Ontology terms of protein products for DEGs during pollinated fruit set...

Additional file 3: of Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis glomerata L.)

Guangyan Feng (4436689)
Lei Xu (78676)
Jianping Wang (215292)
Gang Nie (1643194)
Bradley Bushman (5816930)
Wengang Xie (3945377)
Haidong Yan (102955)
Zhongfu Yang (4436686)
Hao Guan (498369)
Linkai Huang (546829)
Xinquan Zhang (546832)

October 2018

Table S11. The primers used for qRT-PCR. Table S12. Targets of miRNAs in the BV stage, VE stage, and...

Additional file 1: Table S1. of The loss-of-function GLABROUS 3 mutation in cucumber is due to LTR-retrotransposon insertion in a class IV HD-ZIP transcription factor gene CsGL3 that is epistatic over CsGL1

Yupeng Pan (1446430)
Kailiang Bo (3486968)
Zhihui Cheng (296359)
Yiqun Weng (128212)

December 2015

Primer information of all markers used in the study for genetic mapping, quantitative real-time PCR,...

Additional file 1: Figure S1. of Expression and functional analysis of the Propamocarb-related gene CsDIR16 in cucumbers

Chunhong Liu (480470)
Zhiwei Qin (840779)
Xiuyan Zhou (4070086)
Ming Xin (3112116)
Chunhua Wang (439592)
Dong Liu (115204)
Shengnan Li (345816)

January 2018

Amino acid sequence alignment of the DIR family from cucumber, Arabidopsis thaliana (At) and Cucumis...

Additional file 3: of Functional characterization of cucumber (Cucumis sativus L.) Clade V MLO genes

Jeroen Berg (3525311)
Michela Appiano (439289)
Gerard Bijsterbosch (3945488)
Richard Visser (3431771)
Henk Schouten (3525314)
Yuling Bai (395623)

April 2017

Relative transcript abundances in two tissues of PM susceptible cucumber cultivar ‘Sheila’ (A) hypoc...

Additional file 10: of Functional characterization of cucumber (Cucumis sativus L.) Clade V MLO genes

Jeroen Berg (3525311)
Michela Appiano (439289)
Gerard Bijsterbosch (3945488)
Richard Visser (3431771)
Henk Schouten (3525314)
Yuling Bai (395623)

April 2017

Intron 6 of CsaMLO1 (A) and intron 12 of CsaMLO11 (D) were amplified from genomic DNA isolated from ...

Additional file 1: of MicroRNAs and their targets in cucumber shoot apices in response to temperature and photoperiod

Xiaohui Zhang (81778)
Yunsong Lai (2557420)
Wei Zhang (405)
Jalil Ahmad (5980487)
Yang Qiu (368797)
Xiaoxue Zhang (1755322)
Mengmeng Duan (3596504)
Tongjin Liu (5980490)
Jiangping Song (413328)
Haiping Wang (318650)
Xixiang Li (128220)

November 2018

Table S1. summary of sRNA sequencing data. Table S2. summary of known miRNAs. Table S3. summary of n...

New insights into the roles of cucumber TIR1 homologs and miR393 in regulating fruit/seed set development and leaf morphogenesis

Jian Xu
Ji Li
Li Cui
Ting Zhang
Zhe Wu
Pin-Yu Zhu
Yong-Jiao Meng
Kai-Jing Zhang
Xia-Qing Yu
Qun-Feng Lou
Jin-Feng Chen

July 2017

Abstract Background TIR1-like proteins act as auxin receptors and play essential roles in auxin-medi...

Additional file 15: of Inferring the regulatory network of the miRNA-mediated response to biotic and abiotic stress in melon

Alejandro Sanz-Carbonell (6374522)
MarĂa Marques (6374525)
Antonio Bustamante (6374528)
Mario Fares (6374531)
Guillermo Rodrigo (53381)
Gustavo Gomez (114453)

February 2019

Table S8. Detail of the primers used for stem-loop qRT-PCR analysis of melon miRNAs. (TIF 14782 kb

Additional file 1: of Comparative transcriptomics reveals suppressed expression of genes related to auxin and the cell cycle contributes to the resistance of cucumber against Meloidogyne incognita

Xing Wang (154377)
Chunyan Cheng (409996)
Kaijing Zhang (5594516)
Zhen Tian (438719)
Jian Xu (31545)
Shuqiong Yang (3455627)
Qunfeng Lou (409994)
Ji Li (207201)
Jin-Feng Chen (4279501)

August 2018

Table S1. The statistics of RNA-seq sequencing data in this study. Rck and Rt represent the control ...

Additional file 3: Figure S1. of The loss-of-function GLABROUS 3 mutation in cucumber is due to LTR-retrotransposon insertion in a class IV HD-ZIP transcription factor gene CsGL3 that is epistatic over CsGL1

Yupeng Pan (1446430)
Kailiang Bo (3486968)
Zhihui Cheng (296359)
Yiqun Weng (128212)

December 2015

Detection of 5005-bp LTR retrotransposon insertion found at the csgl3 allele in natural populations ...

Additional file 2: of MicroRNAs and their targets in cucumber shoot apices in response to temperature and photoperiod

Xiaohui Zhang (81778)
Yunsong Lai (2557420)
Wei Zhang (405)
Jalil Ahmad (5980487)
Yang Qiu (368797)
Xiaoxue Zhang (1755322)
Mengmeng Duan (3596504)
Tongjin Liu (5980490)
Jiangping Song (413328)
Haiping Wang (318650)
Xixiang Li (128220)

November 2018

Figure S1. Length distribution of small RNAs in cucumber shoot tips. Figure S2. Alignment of exons o...

Additional file 2: of Functional characterization of cucumber (Cucumis sativus L.) Clade V MLO genes

Jeroen Berg (3525311)
Michela Appiano (439289)
Gerard Bijsterbosch (3945488)
Richard Visser (3431771)
Henk Schouten (3525314)
Yuling Bai (395623)

April 2017

Data on the transcript abundance in four tissues of Arabidopsis thaliana, determined using RNA-seq w...

Additional file 1: Table S1. of Overexpression of plum auxin receptor PslTIR1 in tomato alters plant growth, fruit development and fruit shelf-life characteristics

I. El-Sharkawy (3457040)
S. Sherif (3457037)
W. El Kayal (3457046)
B. Jones (3457043)
Z. Li (9162)
A. Sullivan (824982)
Subramanian Jayasankar (354387)

February 2016

The oligonucleotide primers. Figure S1. PCR with genomic DNA of potential positive PslTIR1âtransge...

Additional file 2: of Identification of a stable major-effect QTL (Parth 2.1) controlling parthenocarpy in cucumber and associated candidate gene analysis via whole genome re-sequencing

Zhe Wu (582498)
Ting Zhang (102583)
Lei Li (29537)
Jian Xu (31545)
Xiaodong Qin (414196)
Tinglin Zhang (3587303)
Li Cui (37567)
Qunfeng Lou (409994)
Ji Li (207201)
Jinfeng Chen (118034)

August 2016

Correlation analysis between PP for the F2:3 families in spring and fall in 2013. Parthenocarpy perc...

Additional file 3: of First RNA-seq approach to study fruit set and parthenocarpy in zucchini (Cucurbita pepo L.)

Teresa Pomares-Viciana (658346)
Mercedes Del Río-Celestino (6309920)
Belén Román (658347)
Jose Die (5151449)
Belén Pico (6309923)
Pedro Gómez (35587)

February 2019

Tables “PF MU16 vs UF MU16” (Ontology terms of protein products for DEGs during pollinated fruit set...

Additional file 3: of Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis glomerata L.)

Guangyan Feng (4436689)
Lei Xu (78676)
Jianping Wang (215292)
Gang Nie (1643194)
Bradley Bushman (5816930)
Wengang Xie (3945377)
Haidong Yan (102955)
Zhongfu Yang (4436686)
Hao Guan (498369)
Linkai Huang (546829)
Xinquan Zhang (546832)

October 2018

Table S11. The primers used for qRT-PCR. Table S12. Targets of miRNAs in the BV stage, VE stage, and...

Additional file 3: Table S1. of New insights into the roles of cucumber TIR1 homologs and miR393 in regulating fruit/seed set development and leaf morphogenesis

Abstract

Extracted data

Additional file 3: Table S1. of New insights into the roles of cucumber TIR1 homologs and miR393 in regulating fruit/seed set development and leaf morphogenesis

Abstract

Extracted data

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