Figure S1. Alternate allele frequency for 23Â M and 10Â M SNP sets. Histograms show the alternative allele frequency for the ~23 million SNPs discovered by WGS and the ~10 million SNPs that were compatible with array design (see Table 1). A high number of SNPs were observed at 100% alternate allele frequency in a sample cohort that included deep sequencing (see Additional file 1: Table S1) of Twilight (the horse used for the reference genome) indicating likely Sanger sequence errors. (PNG 87 kb
An equine SNP genotyping array was developed and evaluated on a panel of samples representing 14 dom...
We constructed a 400K WG tiling oligoarray for the horse and applied it for the discovery of copy nu...
This file contains genotype information on 54,602 SNPs for 209 horses. The genotypes are from Illumi...
Position of variants discovered from WGS data. File contains chromosome, bp position, distance from ...
SNP validation by discovery by variant calling group. SNPs discovered from whole genome sequence (Se...
Whole genome sequencing (WGS) samples. Whole genome sequencing samples with horse identification and...
Sample breed and tagging breed groups. Samples (n = 485) from either whole genome sequence (WGS) o...
Background: To date, genome-scale analyses in the domestic horse have been limited by suboptimal sin...
MNEc2M SNP information. Contains information for SNPs included on the MNEc2M array. Columns include ...
BackgroundTo date, genome-scale analyses in the domestic horse have been limited by suboptimal singl...
Abstract Background To date, genome-scale analyses in the domestic horse have been limited by subopt...
Logistic regression of DNA Sample success. A logistic regression was fit, predicting the probability...
Background: To date, genome-scale analyses in the domestic horse have been limited by suboptimal sin...
An equine SNP genotyping array was developed and evaluated on a panel of samples representing 14 dom...
Genome-wide CNV and SNP association plots of insect bite hypersensitivity in Friesian horses. Genome...
An equine SNP genotyping array was developed and evaluated on a panel of samples representing 14 dom...
We constructed a 400K WG tiling oligoarray for the horse and applied it for the discovery of copy nu...
This file contains genotype information on 54,602 SNPs for 209 horses. The genotypes are from Illumi...
Position of variants discovered from WGS data. File contains chromosome, bp position, distance from ...
SNP validation by discovery by variant calling group. SNPs discovered from whole genome sequence (Se...
Whole genome sequencing (WGS) samples. Whole genome sequencing samples with horse identification and...
Sample breed and tagging breed groups. Samples (n = 485) from either whole genome sequence (WGS) o...
Background: To date, genome-scale analyses in the domestic horse have been limited by suboptimal sin...
MNEc2M SNP information. Contains information for SNPs included on the MNEc2M array. Columns include ...
BackgroundTo date, genome-scale analyses in the domestic horse have been limited by suboptimal singl...
Abstract Background To date, genome-scale analyses in the domestic horse have been limited by subopt...
Logistic regression of DNA Sample success. A logistic regression was fit, predicting the probability...
Background: To date, genome-scale analyses in the domestic horse have been limited by suboptimal sin...
An equine SNP genotyping array was developed and evaluated on a panel of samples representing 14 dom...
Genome-wide CNV and SNP association plots of insect bite hypersensitivity in Friesian horses. Genome...
An equine SNP genotyping array was developed and evaluated on a panel of samples representing 14 dom...
We constructed a 400K WG tiling oligoarray for the horse and applied it for the discovery of copy nu...
This file contains genotype information on 54,602 SNPs for 209 horses. The genotypes are from Illumi...