Additional file 11: Table S10. of An interaction map of circulating metabolites, immune gene networks, and their genetic regulation

Additional file 1 of Analyzing a co-occurrence gene-interaction network to identify disease-gene association

Amira Al-Aamri (6318209)
Kamal Taha (6318125)
Yousof Al-Hammadi (6318212)
Maher Maalouf (6318215)
Dirar Homouz (278479)

February 2019

Document containing the list of genes for each cancer type according to MalaCards and NCIâs GDC. (...

Additional file 4: of Investigation of lipid metabolism dysregulation and the effects on immune microenvironments in pan-cancer using multiple omics data

Yang Hao (155400)
Daixi Li (5830415)
Yong Xu (17491)
Jian Ouyang (179347)
Yongkun Wang (608397)
Yuqi Zhang (286958)
Baoguo Li (143191)
Lu Xie (55571)
Guangrong Qin (594367)

May 2019

The correlation of transcripition factor and target pairs in key lipidÂ metabolism pathways. (XLSX 5...

Additional file 1: of Investigation of coordination and order in transcription regulation of innate and adaptive immunity genes in type 1 diabetes

Shouguo Gao (136403)
Nathaniel Wolanyk (3705835)
Ye Chen (241426)
Shuang Jia (21248)
Martin Hessner (261518)
Xujing Wang (21247)

January 2017

Table S1. Innate & adaptive immunity genes. Table S2. Activated protein complexes. Table S3. GSEA re...

Additional file 8: Table S7. of An interaction map of circulating metabolites, immune gene networks, and their genetic regulation

Artika Nath (4321105)
Scott Ritchie (3263322)
Sean Byars (3512819)
Liam Fearnley (4321111)
Aki Havulinna (250541)
Anni Joensuu (4321108)
Antti Kangas (3461750)
Pasi Soininen (74273)
Annika Wennerström (488308)
Lili Milani (73375)
Andres Metspalu (61760)
Satu Männistö (201550)
Peter Würtz (203959)
Johannes Kettunen (120333)
Emma Raitoharju (606821)
Mika Kähönen (131499)
Markus Juonala (186368)
Aarno Palotie (41342)
Mika Ala-Korpela (74279)
Samuli Ripatti (144251)
Terho Lehtimäki (49739)
Gad Abraham (3829777)
Olli Raitakari (144269)
Veikko Salomaa (62543)
Markus Perola (62544)
Michael Inouye (103694)

August 2017

Metabolite measures associated with modules, meta-analysis of DILGOM07 and YFS. (XLSX 232 kb

Additional file 6: Table S5. of An interaction map of circulating metabolites, immune gene networks, and their genetic regulation

Artika Nath (4321105)
Scott Ritchie (3263322)
Sean Byars (3512819)
Liam Fearnley (4321111)
Aki Havulinna (250541)
Anni Joensuu (4321108)
Antti Kangas (3461750)
Pasi Soininen (74273)
Annika Wennerström (488308)
Lili Milani (73375)
Andres Metspalu (61760)
Satu Männistö (201550)
Peter Würtz (203959)
Johannes Kettunen (120333)
Emma Raitoharju (606821)
Mika Kähönen (131499)
Markus Juonala (186368)
Aarno Palotie (41342)
Mika Ala-Korpela (74279)
Samuli Ripatti (144251)
Terho Lehtimäki (49739)
Gad Abraham (3829777)
Olli Raitakari (144269)
Veikko Salomaa (62543)
Markus Perola (62544)
Michael Inouye (103694)

August 2017

Association between immune modules and blood cell counts (leukocyte and platelet counts). (XLSX 45 k...

Additional file 11: Table S2. of Shared genetic control of expression and methylation in peripheral blood

Konstantin Shakhbazov (747072)
Joseph Powell (3400100)
Gibran Hemani (208828)
Anjali Henders (3400097)
Nicholas Martin (254696)
Peter Visscher (3400094)
Grant Montgomery (16569)
Allan McRae (3400103)

April 2016

Number of unique DNA methylation probes correlated with a gene in the largest correlation graph comp...

Additional file 1: of Genome analysis and pleiotropy assessment using causal networks with loss of function mutation and metabolomics

Azam Yazdani (6723497)
Akram Yazdani (6723500)
Sarah Elsea (162372)
Daniel Schaid (523059)
Michael Kosorok (6723503)
Gita Dangol (6723506)
Ahmad Samiei (6723509)

May 2019

Figure S1. European-American metabolomic causal network using the G-DAG algorithm. Table S1. Charact...

Additional file 1: of Genome-scale network model of metabolism and histone acetylation reveals metabolic dependencies of histone deacetylase inhibitors

Fangzhou Shen (5140994)
Luigi Boccuto (3419513)
Rini Pauly (136064)
Sujata Srikanth (6417701)
Sriram Chandrasekaran (493131)

March 2019

File contains Supplementary figures 1-9 and Supplementary tables 1-8. (PDF 1.8 MB

Additional file 23: Table S3. of Shared genetic control of expression and methylation in peripheral blood

Konstantin Shakhbazov (747072)
Joseph Powell (3400100)
Gibran Hemani (208828)
Anjali Henders (3400097)
Nicholas Martin (254696)
Peter Visscher (3400094)
Grant Montgomery (16569)
Allan McRae (3400103)

April 2016

The number of the same chromosome probes pairs with shared QTL(s) from the final correlation list th...

Additional file 17: Figure S11. of Shared genetic control of expression and methylation in peripheral blood

Konstantin Shakhbazov (747072)
Joseph Powell (3400100)
Gibran Hemani (208828)
Anjali Henders (3400097)
Nicholas Martin (254696)
Peter Visscher (3400094)
Grant Montgomery (16569)
Allan McRae (3400103)

April 2016

Graph representation of the correlation structure for the same chromosome probe pairs with shared QT...

Additional file 9: of An integrative metabolomics and transcriptomics study to identify metabolic alterations in aged skin of humans in vivo

Andreas Kuehne (2156200)
Janosch Hildebrand (3751222)
Joern Soehle (3751210)
Horst Wenck (180890)
Lara Terstegen (3751216)
Stefan Gallinat (3751219)
Anja Knott (3751213)
Marc Winnefeld (180897)
Nicola Zamboni (6446)

February 2017

Locality analysis results of the Interleukin 4 Induced (IL4I1), a lysosomal L-amino-acid oxidase. Up...

Additional file 1: Table S1. of Mergeomics: a web server for identifying pathological pathways, networks, and key regulators via multidimensional data integration

Douglas Arneson (3446480)
Anindya Bhattacharya (127895)
Le Shu (3144336)
Ville-Petteri MĂ¤kinen (3446483)
Xia Yang (46748)

September 2016

List of public datasets available for access in the Mergeomics web server. (DOCX 128 kb

Additional file 11: of Regulatory network changes between cell lines and their tissues of origin

Camila Lopes-Ramos (4431487)
Joseph Paulson (3495965)
Cho-Yi Chen (4431490)
Marieke Kuijjer (3553085)
Maud Fagny (3470801)
John Platig (3115692)
Abhijeet Sonawane (4431484)
Dawn DeMeo (3115695)
John Quackenbush (1213)
Kimberly Glass (416881)

September 2017

List of genes in the KEGG cell cycle pathway that are found expressed in our data set. (XLSX 27Â kb

Additional file 3 of An integrative analysis of gene expression and molecular interaction data to identify dys-regulated sub-networks in inflammatory bowel disease

Daniele Muraro (248151)
Alison Simmons (221381)

January 2016

Supplementary_Workbook.xls — Excel workbook comprising the interaction networks described in the mai...

Additional file 1: Table S1. of Predicting gene targets from integrative analyses of summary data from GWAS and eQTL studies for 28 human complex traits

Jennifer Pavlides (3449879)
Zhihong Zhu (227325)
Jacob Gratten (3300798)
Allan McRae (3400103)
Naomi Wray (3449882)
Jian Yang (12136)

August 2016

GWAS information. Table S2. SMR results (P SMR <8.4 × 10–6). Table S3. SMR and HEIDI results (P HEID...

Additional file 1 of Analyzing a co-occurrence gene-interaction network to identify disease-gene association

Amira Al-Aamri (6318209)
Kamal Taha (6318125)
Yousof Al-Hammadi (6318212)
Maher Maalouf (6318215)
Dirar Homouz (278479)

February 2019

Document containing the list of genes for each cancer type according to MalaCards and NCIâs GDC. (...

Additional file 4: of Investigation of lipid metabolism dysregulation and the effects on immune microenvironments in pan-cancer using multiple omics data

Yang Hao (155400)
Daixi Li (5830415)
Yong Xu (17491)
Jian Ouyang (179347)
Yongkun Wang (608397)
Yuqi Zhang (286958)
Baoguo Li (143191)
Lu Xie (55571)
Guangrong Qin (594367)

May 2019

The correlation of transcripition factor and target pairs in key lipidÂ metabolism pathways. (XLSX 5...

Additional file 1: of Investigation of coordination and order in transcription regulation of innate and adaptive immunity genes in type 1 diabetes

Shouguo Gao (136403)
Nathaniel Wolanyk (3705835)
Ye Chen (241426)
Shuang Jia (21248)
Martin Hessner (261518)
Xujing Wang (21247)

January 2017

Table S1. Innate & adaptive immunity genes. Table S2. Activated protein complexes. Table S3. GSEA re...

Additional file 8: Table S7. of An interaction map of circulating metabolites, immune gene networks, and their genetic regulation

Artika Nath (4321105)
Scott Ritchie (3263322)
Sean Byars (3512819)
Liam Fearnley (4321111)
Aki Havulinna (250541)
Anni Joensuu (4321108)
Antti Kangas (3461750)
Pasi Soininen (74273)
Annika Wennerström (488308)
Lili Milani (73375)
Andres Metspalu (61760)
Satu Männistö (201550)
Peter Würtz (203959)
Johannes Kettunen (120333)
Emma Raitoharju (606821)
Mika Kähönen (131499)
Markus Juonala (186368)
Aarno Palotie (41342)
Mika Ala-Korpela (74279)
Samuli Ripatti (144251)
Terho Lehtimäki (49739)
Gad Abraham (3829777)
Olli Raitakari (144269)
Veikko Salomaa (62543)
Markus Perola (62544)
Michael Inouye (103694)

August 2017

Metabolite measures associated with modules, meta-analysis of DILGOM07 and YFS. (XLSX 232 kb

Additional file 6: Table S5. of An interaction map of circulating metabolites, immune gene networks, and their genetic regulation

Artika Nath (4321105)
Scott Ritchie (3263322)
Sean Byars (3512819)
Liam Fearnley (4321111)
Aki Havulinna (250541)
Anni Joensuu (4321108)
Antti Kangas (3461750)
Pasi Soininen (74273)
Annika Wennerström (488308)
Lili Milani (73375)
Andres Metspalu (61760)
Satu Männistö (201550)
Peter Würtz (203959)
Johannes Kettunen (120333)
Emma Raitoharju (606821)
Mika Kähönen (131499)
Markus Juonala (186368)
Aarno Palotie (41342)
Mika Ala-Korpela (74279)
Samuli Ripatti (144251)
Terho Lehtimäki (49739)
Gad Abraham (3829777)
Olli Raitakari (144269)
Veikko Salomaa (62543)
Markus Perola (62544)
Michael Inouye (103694)

August 2017

Association between immune modules and blood cell counts (leukocyte and platelet counts). (XLSX 45 k...

Additional file 11: Table S2. of Shared genetic control of expression and methylation in peripheral blood

Konstantin Shakhbazov (747072)
Joseph Powell (3400100)
Gibran Hemani (208828)
Anjali Henders (3400097)
Nicholas Martin (254696)
Peter Visscher (3400094)
Grant Montgomery (16569)
Allan McRae (3400103)

April 2016

Number of unique DNA methylation probes correlated with a gene in the largest correlation graph comp...

Additional file 1: of Genome analysis and pleiotropy assessment using causal networks with loss of function mutation and metabolomics

Azam Yazdani (6723497)
Akram Yazdani (6723500)
Sarah Elsea (162372)
Daniel Schaid (523059)
Michael Kosorok (6723503)
Gita Dangol (6723506)
Ahmad Samiei (6723509)

May 2019

Figure S1. European-American metabolomic causal network using the G-DAG algorithm. Table S1. Charact...

Additional file 1: of Genome-scale network model of metabolism and histone acetylation reveals metabolic dependencies of histone deacetylase inhibitors

Fangzhou Shen (5140994)
Luigi Boccuto (3419513)
Rini Pauly (136064)
Sujata Srikanth (6417701)
Sriram Chandrasekaran (493131)

March 2019

File contains Supplementary figures 1-9 and Supplementary tables 1-8. (PDF 1.8 MB

Additional file 23: Table S3. of Shared genetic control of expression and methylation in peripheral blood

Konstantin Shakhbazov (747072)
Joseph Powell (3400100)
Gibran Hemani (208828)
Anjali Henders (3400097)
Nicholas Martin (254696)
Peter Visscher (3400094)
Grant Montgomery (16569)
Allan McRae (3400103)

April 2016

The number of the same chromosome probes pairs with shared QTL(s) from the final correlation list th...

Additional file 17: Figure S11. of Shared genetic control of expression and methylation in peripheral blood

Konstantin Shakhbazov (747072)
Joseph Powell (3400100)
Gibran Hemani (208828)
Anjali Henders (3400097)
Nicholas Martin (254696)
Peter Visscher (3400094)
Grant Montgomery (16569)
Allan McRae (3400103)

April 2016

Graph representation of the correlation structure for the same chromosome probe pairs with shared QT...

Additional file 9: of An integrative metabolomics and transcriptomics study to identify metabolic alterations in aged skin of humans in vivo

Andreas Kuehne (2156200)
Janosch Hildebrand (3751222)
Joern Soehle (3751210)
Horst Wenck (180890)
Lara Terstegen (3751216)
Stefan Gallinat (3751219)
Anja Knott (3751213)
Marc Winnefeld (180897)
Nicola Zamboni (6446)

February 2017

Locality analysis results of the Interleukin 4 Induced (IL4I1), a lysosomal L-amino-acid oxidase. Up...

Additional file 1: Table S1. of Mergeomics: a web server for identifying pathological pathways, networks, and key regulators via multidimensional data integration

Douglas Arneson (3446480)
Anindya Bhattacharya (127895)
Le Shu (3144336)
Ville-Petteri MĂ¤kinen (3446483)
Xia Yang (46748)

September 2016

List of public datasets available for access in the Mergeomics web server. (DOCX 128 kb

Additional file 11: of Regulatory network changes between cell lines and their tissues of origin

Camila Lopes-Ramos (4431487)
Joseph Paulson (3495965)
Cho-Yi Chen (4431490)
Marieke Kuijjer (3553085)
Maud Fagny (3470801)
John Platig (3115692)
Abhijeet Sonawane (4431484)
Dawn DeMeo (3115695)
John Quackenbush (1213)
Kimberly Glass (416881)

September 2017

List of genes in the KEGG cell cycle pathway that are found expressed in our data set. (XLSX 27Â kb

Additional file 3 of An integrative analysis of gene expression and molecular interaction data to identify dys-regulated sub-networks in inflammatory bowel disease

Daniele Muraro (248151)
Alison Simmons (221381)

January 2016

Supplementary_Workbook.xls — Excel workbook comprising the interaction networks described in the mai...

Additional file 1: Table S1. of Predicting gene targets from integrative analyses of summary data from GWAS and eQTL studies for 28 human complex traits

Jennifer Pavlides (3449879)
Zhihong Zhu (227325)
Jacob Gratten (3300798)
Allan McRae (3400103)
Naomi Wray (3449882)
Jian Yang (12136)

August 2016

GWAS information. Table S2. SMR results (P SMR <8.4 × 10–6). Table S3. SMR and HEIDI results (P HEID...

Additional file 1 of Analyzing a co-occurrence gene-interaction network to identify disease-gene association

Amira Al-Aamri (6318209)
Kamal Taha (6318125)
Yousof Al-Hammadi (6318212)
Maher Maalouf (6318215)
Dirar Homouz (278479)

February 2019

Document containing the list of genes for each cancer type according to MalaCards and NCIâs GDC. (...

Additional file 4: of Investigation of lipid metabolism dysregulation and the effects on immune microenvironments in pan-cancer using multiple omics data

Yang Hao (155400)
Daixi Li (5830415)
Yong Xu (17491)
Jian Ouyang (179347)
Yongkun Wang (608397)
Yuqi Zhang (286958)
Baoguo Li (143191)
Lu Xie (55571)
Guangrong Qin (594367)

May 2019

The correlation of transcripition factor and target pairs in key lipidÂ metabolism pathways. (XLSX 5...

Additional file 1: of Investigation of coordination and order in transcription regulation of innate and adaptive immunity genes in type 1 diabetes

Shouguo Gao (136403)
Nathaniel Wolanyk (3705835)
Ye Chen (241426)
Shuang Jia (21248)
Martin Hessner (261518)
Xujing Wang (21247)

January 2017

Table S1. Innate & adaptive immunity genes. Table S2. Activated protein complexes. Table S3. GSEA re...

Additional file 11: Table S10. of An interaction map of circulating metabolites, immune gene networks, and their genetic regulation

Abstract

Extracted data

Additional file 11: Table S10. of An interaction map of circulating metabolites, immune gene networks, and their genetic regulation

Abstract

Extracted data

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