Additional file 9: Table S5. of Feed-additive probiotics accelerate yet antibiotics delay intestinal microbiota maturation in broiler chicken

Additional file 2: Table S2. of Probiotic (Enterococcus faecium) induced responses of the hepatic proteome improves metabolic efficiency of broiler chickens (Gallus gallus)

Aijuan Zheng (219579)
Jianjie Luo (3469967)
Kun Meng (141278)
Jianke Li (219587)
Wayne Bryden (3469970)
Wenhuan Chang (3163065)
Shu Zhang (22238)
L. Wang (2327974)
Guohua Liu (506590)
Bin Yao (4375)

February 2016

The primer sequences used for qPCR analysis of the differentially expressed proteins of the liver of...

Additional file 24: of The chicken gut metagenome and the modulatory effects of plant-derived benzylisoquinoline alkaloids

Peng Huang (105814)
Yan Zhang (8098)
Kangpeng Xiao (3569027)
Fan Jiang (144211)
Hengchao Wang (6017069)
Dazhi Tang (6017072)
Dan Liu (108669)
Bo Liu (127343)
Yisong Liu (105808)
Xi He (208289)
Hua Liu (63708)
Xiubin Liu (544968)
Zhixing Qing (6017075)
Conghui Liu (542714)
Jialu Huang (6017078)
Yuwei Ren (6017081)
Long Yun (5845550)
Lijuan Yin (764679)
Qian Lin (406644)
Cheng Zeng (621718)
Xiaogang Su (785160)
Jingyang Yuan (6017084)
Li Lin (111038)
Nanxi Hu (6017087)
Hualiang Cao (6017090)
Sanwen Huang (128235)
Yuming Guo (162863)
Wei Fan (109074)
Jianguo Zeng (105806)

November 2018

Figure S18. (a) The relative abundances of genera increased by MCE or CTC in the foregut. Kitasatosp...

Additional file 3: Table S3. of Probiotic (Enterococcus faecium) induced responses of the hepatic proteome improves metabolic efficiency of broiler chickens (Gallus gallus)

Aijuan Zheng (219579)
Jianjie Luo (3469967)
Kun Meng (141278)
Jianke Li (219587)
Wayne Bryden (3469970)
Wenhuan Chang (3163065)
Shu Zhang (22238)
L. Wang (2327974)
Guohua Liu (506590)
Bin Yao (4375)

February 2016

Peptides identified from the liver of AA broiler chickens based on Mascot scores. (DOC 103Â kb

Additional file 1: Table S1. of Feed-additive probiotics accelerate yet antibiotics delay intestinal microbiota maturation in broiler chicken

Pengfei Gao (1292217)
Chen Ma (714759)
Zheng Sun (261083)
Lifeng Wang (121568)
Shi Huang (125861)
Xiaoquan Su (121144)
Jian Xu (31545)
Heping Zhang (29038)

August 2017

Effects of P-8 and antibiotics on Average Daily Gain (ADG), Average Daily Feed In (ADFI) and Feed Co...

Additional file 10: Fig. S4. of Feed-additive probiotics accelerate yet antibiotics delay intestinal microbiota maturation in broiler chicken

Pengfei Gao (1292217)
Chen Ma (714759)
Zheng Sun (261083)
Lifeng Wang (121568)
Shi Huang (125861)
Xiaoquan Su (121144)
Jian Xu (31545)
Heping Zhang (29038)

August 2017

Bacterial co-occurrence network of microbiota revealed a distinct inter-genera relationship driven b...

Additional file 4: Table S2. of Feed-additive probiotics accelerate yet antibiotics delay intestinal microbiota maturation in broiler chicken

Pengfei Gao (1292217)
Chen Ma (714759)
Zheng Sun (261083)
Lifeng Wang (121568)
Shi Huang (125861)
Xiaoquan Su (121144)
Jian Xu (31545)
Heping Zhang (29038)

August 2017

Pairwise Meta-Storms distances of all microbiome samples in this study for beta diversity analysis. ...

Additional file 5: of Antibiotic treatment triggers gut dysbiosis and modulates metabolism in a chicken model of gastro-intestinal infection

Caroline Le Roy (6266579)
Martin Woodward (3398276)
Richard Ellis (3271155)
Roberto La Ragione (582502)
Sandrine Claus (6266585)

January 2019

Relative abundance in percentage of the Spirochaetes OTU for each treatment group along the study. (...

Additional file 1: of Antibiotic-mediated changes in the fecal microbiome of broiler chickens define the incidence of antibiotic resistance genes

Wenguang Xiong (4851646)
Yulin Wang (213752)
Yongxue Sun (4851643)
Liping Ma (502627)
Qinglin Zeng (4851649)
Xiaotao Jiang (191589)
Andong Li (4851652)
Zhenling Zeng (3404546)
Tong Zhang (103827)

February 2018

Figure S1. Animal groups and sampling time points. Figure S2. ARG types in chicken fecal metagenomes...

Additional file 1: of Antibiotic treatment triggers gut dysbiosis and modulates metabolism in a chicken model of gastro-intestinal infection

Caroline Le Roy (6266579)
Martin Woodward (3398276)
Richard Ellis (3271155)
Roberto La Ragione (582502)
Sandrine Claus (6266585)

January 2019

Infection modifies GM metabolic activity and polysaccharide intestinal lumen content. (A) OPLS-DA sc...

Additional file 1: Table S1. of Probiotic (Enterococcus faecium) induced responses of the hepatic proteome improves metabolic efficiency of broiler chickens (Gallus gallus)

Aijuan Zheng (219579)
Jianjie Luo (3469967)
Kun Meng (141278)
Jianke Li (219587)
Wayne Bryden (3469970)
Wenhuan Chang (3163065)
Shu Zhang (22238)
L. Wang (2327974)
Guohua Liu (506590)
Bin Yao (4375)

February 2016

The composition of broiler chickens starter and grower diets (g/kg). (DOC 43Â kb

Feed-additive probiotics accelerate yet antibiotics delay intestinal microbiota maturation in broiler chicken

Pengfei Gao
Chen Ma
Zheng Sun
Lifeng Wang
Shi Huang
Xiaoquan Su
Jian Xu
Heping Zhang

August 2017

Abstract Background Reducing antibiotics overuse in animal agriculture is one key in combat against ...

Additional file 6: of Antibiotic treatment triggers gut dysbiosis and modulates metabolism in a chicken model of gastro-intestinal infection

Caroline Le Roy (6266579)
Martin Woodward (3398276)
Richard Ellis (3271155)
Roberto La Ragione (582502)
Sandrine Claus (6266585)

January 2019

Loadings associated to the PCA scores plot in Fig. 5 calculating using the relative abundance of OTU...

Additional file 2: of Antibiotic treatment triggers gut dysbiosis and modulates metabolism in a chicken model of gastro-intestinal infection

Caroline Le Roy (6266579)
Martin Woodward (3398276)
Richard Ellis (3271155)
Roberto La Ragione (582502)
Sandrine Claus (6266585)

January 2019

Plasma level of betaine at PM2 for all groups, A: control, B: Infected, C: infected and treated (62 ...

Additional file 1: of Perturbation of microbiota in one-day old broiler chickens with antibiotic for 24 hours negatively affects intestinal immune development

Dirkjan Schokker (579932)
Alfons Jansman (3849133)
Gosse Veninga (3849130)
Naomi de Bruin (3849136)
Stephanie Vastenhouw (3849139)
Freddy de Bree (3849127)
Alex Bossers (64605)
Johanna Rebel (299313)
Mari Smits (3122115)

March 2017

Full analysis of differential expressed genes. The Additional File (presented as.xlsx) contains mult...

Additional file 3: of Antibiotic treatment triggers gut dysbiosis and modulates metabolism in a chicken model of gastro-intestinal infection

Caroline Le Roy (6266579)
Martin Woodward (3398276)
Richard Ellis (3271155)
Roberto La Ragione (582502)
Sandrine Claus (6266585)

January 2019

Glucose plasma level at PM2 for all groups, A: control, B: Infected, C: infected and treated (62 ppm...

Additional file 2: Table S2. of Probiotic (Enterococcus faecium) induced responses of the hepatic proteome improves metabolic efficiency of broiler chickens (Gallus gallus)

Aijuan Zheng (219579)
Jianjie Luo (3469967)
Kun Meng (141278)
Jianke Li (219587)
Wayne Bryden (3469970)
Wenhuan Chang (3163065)
Shu Zhang (22238)
L. Wang (2327974)
Guohua Liu (506590)
Bin Yao (4375)

February 2016

The primer sequences used for qPCR analysis of the differentially expressed proteins of the liver of...

Additional file 24: of The chicken gut metagenome and the modulatory effects of plant-derived benzylisoquinoline alkaloids

Peng Huang (105814)
Yan Zhang (8098)
Kangpeng Xiao (3569027)
Fan Jiang (144211)
Hengchao Wang (6017069)
Dazhi Tang (6017072)
Dan Liu (108669)
Bo Liu (127343)
Yisong Liu (105808)
Xi He (208289)
Hua Liu (63708)
Xiubin Liu (544968)
Zhixing Qing (6017075)
Conghui Liu (542714)
Jialu Huang (6017078)
Yuwei Ren (6017081)
Long Yun (5845550)
Lijuan Yin (764679)
Qian Lin (406644)
Cheng Zeng (621718)
Xiaogang Su (785160)
Jingyang Yuan (6017084)
Li Lin (111038)
Nanxi Hu (6017087)
Hualiang Cao (6017090)
Sanwen Huang (128235)
Yuming Guo (162863)
Wei Fan (109074)
Jianguo Zeng (105806)

November 2018

Figure S18. (a) The relative abundances of genera increased by MCE or CTC in the foregut. Kitasatosp...

Additional file 3: Table S3. of Probiotic (Enterococcus faecium) induced responses of the hepatic proteome improves metabolic efficiency of broiler chickens (Gallus gallus)

Aijuan Zheng (219579)
Jianjie Luo (3469967)
Kun Meng (141278)
Jianke Li (219587)
Wayne Bryden (3469970)
Wenhuan Chang (3163065)
Shu Zhang (22238)
L. Wang (2327974)
Guohua Liu (506590)
Bin Yao (4375)

February 2016

Peptides identified from the liver of AA broiler chickens based on Mascot scores. (DOC 103Â kb

Additional file 1: Table S1. of Feed-additive probiotics accelerate yet antibiotics delay intestinal microbiota maturation in broiler chicken

Pengfei Gao (1292217)
Chen Ma (714759)
Zheng Sun (261083)
Lifeng Wang (121568)
Shi Huang (125861)
Xiaoquan Su (121144)
Jian Xu (31545)
Heping Zhang (29038)

August 2017

Effects of P-8 and antibiotics on Average Daily Gain (ADG), Average Daily Feed In (ADFI) and Feed Co...

Additional file 10: Fig. S4. of Feed-additive probiotics accelerate yet antibiotics delay intestinal microbiota maturation in broiler chicken

Pengfei Gao (1292217)
Chen Ma (714759)
Zheng Sun (261083)
Lifeng Wang (121568)
Shi Huang (125861)
Xiaoquan Su (121144)
Jian Xu (31545)
Heping Zhang (29038)

August 2017

Bacterial co-occurrence network of microbiota revealed a distinct inter-genera relationship driven b...

Additional file 4: Table S2. of Feed-additive probiotics accelerate yet antibiotics delay intestinal microbiota maturation in broiler chicken

Pengfei Gao (1292217)
Chen Ma (714759)
Zheng Sun (261083)
Lifeng Wang (121568)
Shi Huang (125861)
Xiaoquan Su (121144)
Jian Xu (31545)
Heping Zhang (29038)

August 2017

Pairwise Meta-Storms distances of all microbiome samples in this study for beta diversity analysis. ...

Additional file 5: of Antibiotic treatment triggers gut dysbiosis and modulates metabolism in a chicken model of gastro-intestinal infection

Caroline Le Roy (6266579)
Martin Woodward (3398276)
Richard Ellis (3271155)
Roberto La Ragione (582502)
Sandrine Claus (6266585)

January 2019

Relative abundance in percentage of the Spirochaetes OTU for each treatment group along the study. (...

Additional file 1: of Antibiotic-mediated changes in the fecal microbiome of broiler chickens define the incidence of antibiotic resistance genes

Wenguang Xiong (4851646)
Yulin Wang (213752)
Yongxue Sun (4851643)
Liping Ma (502627)
Qinglin Zeng (4851649)
Xiaotao Jiang (191589)
Andong Li (4851652)
Zhenling Zeng (3404546)
Tong Zhang (103827)

February 2018

Figure S1. Animal groups and sampling time points. Figure S2. ARG types in chicken fecal metagenomes...

Additional file 1: of Antibiotic treatment triggers gut dysbiosis and modulates metabolism in a chicken model of gastro-intestinal infection

Caroline Le Roy (6266579)
Martin Woodward (3398276)
Richard Ellis (3271155)
Roberto La Ragione (582502)
Sandrine Claus (6266585)

January 2019

Infection modifies GM metabolic activity and polysaccharide intestinal lumen content. (A) OPLS-DA sc...

Additional file 1: Table S1. of Probiotic (Enterococcus faecium) induced responses of the hepatic proteome improves metabolic efficiency of broiler chickens (Gallus gallus)

Aijuan Zheng (219579)
Jianjie Luo (3469967)
Kun Meng (141278)
Jianke Li (219587)
Wayne Bryden (3469970)
Wenhuan Chang (3163065)
Shu Zhang (22238)
L. Wang (2327974)
Guohua Liu (506590)
Bin Yao (4375)

February 2016

The composition of broiler chickens starter and grower diets (g/kg). (DOC 43Â kb

Feed-additive probiotics accelerate yet antibiotics delay intestinal microbiota maturation in broiler chicken

Pengfei Gao
Chen Ma
Zheng Sun
Lifeng Wang
Shi Huang
Xiaoquan Su
Jian Xu
Heping Zhang

August 2017

Abstract Background Reducing antibiotics overuse in animal agriculture is one key in combat against ...

Additional file 6: of Antibiotic treatment triggers gut dysbiosis and modulates metabolism in a chicken model of gastro-intestinal infection

Caroline Le Roy (6266579)
Martin Woodward (3398276)
Richard Ellis (3271155)
Roberto La Ragione (582502)
Sandrine Claus (6266585)

January 2019

Loadings associated to the PCA scores plot in Fig. 5 calculating using the relative abundance of OTU...

Additional file 2: of Antibiotic treatment triggers gut dysbiosis and modulates metabolism in a chicken model of gastro-intestinal infection

Caroline Le Roy (6266579)
Martin Woodward (3398276)
Richard Ellis (3271155)
Roberto La Ragione (582502)
Sandrine Claus (6266585)

January 2019

Plasma level of betaine at PM2 for all groups, A: control, B: Infected, C: infected and treated (62 ...

Additional file 1: of Perturbation of microbiota in one-day old broiler chickens with antibiotic for 24 hours negatively affects intestinal immune development

Dirkjan Schokker (579932)
Alfons Jansman (3849133)
Gosse Veninga (3849130)
Naomi de Bruin (3849136)
Stephanie Vastenhouw (3849139)
Freddy de Bree (3849127)
Alex Bossers (64605)
Johanna Rebel (299313)
Mari Smits (3122115)

March 2017

Full analysis of differential expressed genes. The Additional File (presented as.xlsx) contains mult...

Additional file 3: of Antibiotic treatment triggers gut dysbiosis and modulates metabolism in a chicken model of gastro-intestinal infection

Caroline Le Roy (6266579)
Martin Woodward (3398276)
Richard Ellis (3271155)
Roberto La Ragione (582502)
Sandrine Claus (6266585)

January 2019

Glucose plasma level at PM2 for all groups, A: control, B: Infected, C: infected and treated (62 ppm...

Additional file 2: Table S2. of Probiotic (Enterococcus faecium) induced responses of the hepatic proteome improves metabolic efficiency of broiler chickens (Gallus gallus)

Aijuan Zheng (219579)
Jianjie Luo (3469967)
Kun Meng (141278)
Jianke Li (219587)
Wayne Bryden (3469970)
Wenhuan Chang (3163065)
Shu Zhang (22238)
L. Wang (2327974)
Guohua Liu (506590)
Bin Yao (4375)

February 2016

The primer sequences used for qPCR analysis of the differentially expressed proteins of the liver of...

Additional file 24: of The chicken gut metagenome and the modulatory effects of plant-derived benzylisoquinoline alkaloids

Peng Huang (105814)
Yan Zhang (8098)
Kangpeng Xiao (3569027)
Fan Jiang (144211)
Hengchao Wang (6017069)
Dazhi Tang (6017072)
Dan Liu (108669)
Bo Liu (127343)
Yisong Liu (105808)
Xi He (208289)
Hua Liu (63708)
Xiubin Liu (544968)
Zhixing Qing (6017075)
Conghui Liu (542714)
Jialu Huang (6017078)
Yuwei Ren (6017081)
Long Yun (5845550)
Lijuan Yin (764679)
Qian Lin (406644)
Cheng Zeng (621718)
Xiaogang Su (785160)
Jingyang Yuan (6017084)
Li Lin (111038)
Nanxi Hu (6017087)
Hualiang Cao (6017090)
Sanwen Huang (128235)
Yuming Guo (162863)
Wei Fan (109074)
Jianguo Zeng (105806)

November 2018

Figure S18. (a) The relative abundances of genera increased by MCE or CTC in the foregut. Kitasatosp...

Additional file 3: Table S3. of Probiotic (Enterococcus faecium) induced responses of the hepatic proteome improves metabolic efficiency of broiler chickens (Gallus gallus)

Aijuan Zheng (219579)
Jianjie Luo (3469967)
Kun Meng (141278)
Jianke Li (219587)
Wayne Bryden (3469970)
Wenhuan Chang (3163065)
Shu Zhang (22238)
L. Wang (2327974)
Guohua Liu (506590)
Bin Yao (4375)

February 2016

Peptides identified from the liver of AA broiler chickens based on Mascot scores. (DOC 103Â kb

Additional file 9: Table S5. of Feed-additive probiotics accelerate yet antibiotics delay intestinal microbiota maturation in broiler chicken

Abstract

Extracted data

Additional file 9: Table S5. of Feed-additive probiotics accelerate yet antibiotics delay intestinal microbiota maturation in broiler chicken

Abstract

Extracted data

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