Additional file 5: of Transcriptional analysis of abdominal fat in chickens divergently selected on bodyweight at two ages reveals novel mechanisms controlling adiposity: validating visceral adipose tissue as a dynamic endocrine and metabolic organ

C. Resnyk (4371526)
W. CarrĂŠ (4371559)
X. Wang (770484)
T. Porter (4371517)
J. Simon (4371529)
E. Le Bihan-Duval (4371523)
M. Duclos (4371508)
S. Aggrey (4371514)
L. Cogburn (4371520)

Publication date

August 2017

DOI

10.6084/m9.figshare.c.3855622_d5.v1

Abstract

Differentially expressed (DE) (FDR â¤0.05) identified by RNA-Seq analysis of abdominal fat in HG and LG cockerels (7 wk). A Microsoft Excel file containing one worksheet. (XLSX 277Â kb

Extracted data

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Additional file 5: of Transcriptional analysis of abdominal fat in chickens divergently selected on bodyweight at two ages reveals novel mechanisms controlling adiposity: validating visceral adipose tissue as a dynamic endocrine and metabolic organ

C. Resnyk (4371526)
W. CarrĂŠ (4371559)
X. Wang (770484)
T. Porter (4371517)
J. Simon (4371529)
E. Le Bihan-Duval (4371523)
M. Duclos (4371508)
S. Aggrey (4371514)
L. Cogburn (4371520)

Open link

Publication date

August 2017

DOI

10.6084/m9.figshare.c.3855622_d5.v1

Abstract

Differentially expressed (DE) (FDR â¤0.05) identified by RNA-Seq analysis of abdominal fat in HG and LG cockerels (7 wk). A Microsoft Excel file containing one worksheet. (XLSX 277Â kb

Extracted data

Resnyk, Christopher W.
Chen, Chuming
Huang, Hongzhan
Wu, Cathy H.
Simon, Jean
Le Bihan-Duval, Elisabeth
Duclos, Michel J.
Cogburn, Larry A.

October 2015

Publisher's PDF.Genetic selection for enhanced growth rate in meat-type chickens (Gallus domesticus)...

Additional file 7: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S2. Protein profiling on liver tissues of chicken embryos. A total of 15 gels were assayed, a...

Additional file 6: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Table S5. DEGs identified in liver of E21 embryos between the fat and lean lines. (XLSX 31Â kb

Additional file 1: of Transcriptional analysis of abdominal fat in chickens divergently selected on bodyweight at two ages reveals novel mechanisms controlling adiposity: validating visceral adipose tissue as a dynamic endocrine and metabolic organ

C. Resnyk (4371526)
W. Carré (4371511)
X. Wang (770484)
T. Porter (4371517)
J. Simon (4371529)
E. Le Bihan-Duval (4371523)
M. Duclos (4371508)
S. Aggrey (4371514)
L. Cogburn (4371520)

August 2017

Microarray experimental design. A Microsoft Excel file containing a single work sheet “Array Hybridi...

Additional file 1: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S1. Number of genes expressed and novel transcripts. L and F represent the lean and fat chick...

Additional file 1: of Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

Susanne Bornelöv (189128)
Eyal Seroussi (31976)
Sara Yosefi (165264)
Sharon Benjamini (5144234)
Shoval Miyara (4346146)
Mark Ruzal (5144231)
Manfred Grabherr (2576317)
Nima Rafati (3292704)
Anna-Maja Molin (190648)
Ken Pendavis (4110652)
Shane Burgess (3505550)
Leif Andersson (42573)
Miriam Friedman-Einat (165278)

April 2018

RNA-seq. Data. Table S1. Information about the RNA sequencing. Table S2: Transcripts identified by R...

Transcriptional analysis of abdominal fat in genetically fat and lean chickens reveals adipokines, lipogenic genes and a link between hemostasis and leanness

Resnyk, Christopher W.
Carré, Wilfrid
Wang, Xiaofei
Porter, Tom E.
Simon, Jean
Le Bihan-Duval, Elisabeth
Duclos, Michel Jacques
Aggrey, Sam E.
Cogburn, Larry A.

January 2013

Background: This descriptive study of the abdominal fat transcriptome takes advantage of two experim...

Additional file 10: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S5. Relationship of library size with percentage of genes identified. (DOC 64Â kb

Additional file 9: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S4. Proportion of clean tag numbers (>â96%). L and F represent the lean and fat chicken lin...

Additional file 2: of Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

Susanne BornelĂśv (4346152)
Eyal Seroussi (31976)
Sara Yosefi (165264)
Sharon Benjamini (5144234)
Shoval Miyara (4346146)
Mark Ruzal (5144231)
Manfred Grabherr (2576317)
Nima Rafati (3292704)
Anna-Maja Molin (190648)
Ken Pendavis (4110652)
Shane Burgess (3505550)
Leif Andersson (42573)
Miriam Friedman-Einat (165278)

April 2018

Table S4. The primers used for the qPCR analyses. Excel Worksheet xlsm 12Â KB. (XLSX 11 kb

Transcriptional analysis of abdominal fat in chickens divergently selected on bodyweight at two ages reveals novel mechanisms controlling adiposity: validating visceral adipose tissue as a dynamic endocrine and metabolic organ

C. W. Resnyk
W. Carré
X. Wang
T. E. Porter
J. Simon
E. Le Bihan-Duval
M. J. Duclos
S. E. Aggrey
L. A. Cogburn

August 2017

Abstract Background Decades of intensive genetic selection in the domestic chicken (Gallus gallus do...

Additional file 5: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Table S4. DEGs identified in liver of E17 embryos between the fat and lean lines. (XLSX 138Â kb

Resnyk, Christopher W.
Carré, Wilfrid
Wang, Xiaofei
Porter, Tom E.
Simon, Jean
Duval, Elisabeth
Duclos, Michel
Aggrey, Sam E.
Cogburn, Larry A.

January 2017

The present analyses of the visceral fat transcriptome in chickens divergently selected for a large ...

RNA-Seq Analysis of Abdominal Fat in Genetically Fat and Lean Chickens Highlights a Divergence in Expression of Genes Controlling Adiposity, Hemostasis, and Lipid Metabolism

Resnyk, Christopher W.
Chen, Chuming
Huang, Hongzhan
Wu, Cathy H.
Simon, Jean
Le Bihan-Duval, Elisabeth
Duclos, Michel J.
Cogburn, Larry A.

October 2015

Publisher's PDF.Genetic selection for enhanced growth rate in meat-type chickens (Gallus domesticus)...

RNA-Seq Analysis of Abdominal Fat in Genetically Fat and Lean Chickens Highlights a Divergence in Expression of Genes Controlling Adiposity, Hemostasis, and Lipid Metabolism

Resnyk, Christopher W.
Chen, Chuming
Huang, Hongzhan
Wu, Cathy H.
Simon, Jean
Le Bihan-Duval, Elisabeth
Duclos, Michel J.
Cogburn, Larry A.

October 2015

Publisher's PDF.Genetic selection for enhanced growth rate in meat-type chickens (Gallus domesticus)...

Additional file 7: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S2. Protein profiling on liver tissues of chicken embryos. A total of 15 gels were assayed, a...

Additional file 6: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Table S5. DEGs identified in liver of E21 embryos between the fat and lean lines. (XLSX 31Â kb

C. Resnyk (4371526)
W. Carré (4371511)
X. Wang (770484)
T. Porter (4371517)
J. Simon (4371529)
E. Le Bihan-Duval (4371523)
M. Duclos (4371508)
S. Aggrey (4371514)
L. Cogburn (4371520)

August 2017

Microarray experimental design. A Microsoft Excel file containing a single work sheet “Array Hybridi...

Additional file 1: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S1. Number of genes expressed and novel transcripts. L and F represent the lean and fat chick...

Additional file 1: of Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

Susanne Bornelöv (189128)
Eyal Seroussi (31976)
Sara Yosefi (165264)
Sharon Benjamini (5144234)
Shoval Miyara (4346146)
Mark Ruzal (5144231)
Manfred Grabherr (2576317)
Nima Rafati (3292704)
Anna-Maja Molin (190648)
Ken Pendavis (4110652)
Shane Burgess (3505550)
Leif Andersson (42573)
Miriam Friedman-Einat (165278)

April 2018

RNA-seq. Data. Table S1. Information about the RNA sequencing. Table S2: Transcripts identified by R...

Transcriptional analysis of abdominal fat in genetically fat and lean chickens reveals adipokines, lipogenic genes and a link between hemostasis and leanness

Resnyk, Christopher W.
Carré, Wilfrid
Wang, Xiaofei
Porter, Tom E.
Simon, Jean
Le Bihan-Duval, Elisabeth
Duclos, Michel Jacques
Aggrey, Sam E.
Cogburn, Larry A.

January 2013

Background: This descriptive study of the abdominal fat transcriptome takes advantage of two experim...

Additional file 10: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S5. Relationship of library size with percentage of genes identified. (DOC 64Â kb

Additional file 9: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S4. Proportion of clean tag numbers (>â96%). L and F represent the lean and fat chicken lin...

Additional file 2: of Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

Susanne BornelĂśv (4346152)
Eyal Seroussi (31976)
Sara Yosefi (165264)
Sharon Benjamini (5144234)
Shoval Miyara (4346146)
Mark Ruzal (5144231)
Manfred Grabherr (2576317)
Nima Rafati (3292704)
Anna-Maja Molin (190648)
Ken Pendavis (4110652)
Shane Burgess (3505550)
Leif Andersson (42573)
Miriam Friedman-Einat (165278)

April 2018

Table S4. The primers used for the qPCR analyses. Excel Worksheet xlsm 12Â KB. (XLSX 11 kb

C. W. Resnyk
W. Carré
X. Wang
T. E. Porter
J. Simon
E. Le Bihan-Duval
M. J. Duclos
S. E. Aggrey
L. A. Cogburn

August 2017

Abstract Background Decades of intensive genetic selection in the domestic chicken (Gallus gallus do...

Additional file 5: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Table S4. DEGs identified in liver of E17 embryos between the fat and lean lines. (XLSX 138Â kb

Resnyk, Christopher W.
Carré, Wilfrid
Wang, Xiaofei
Porter, Tom E.
Simon, Jean
Duval, Elisabeth
Duclos, Michel
Aggrey, Sam E.
Cogburn, Larry A.

January 2017

The present analyses of the visceral fat transcriptome in chickens divergently selected for a large ...

RNA-Seq Analysis of Abdominal Fat in Genetically Fat and Lean Chickens Highlights a Divergence in Expression of Genes Controlling Adiposity, Hemostasis, and Lipid Metabolism

Resnyk, Christopher W.
Chen, Chuming
Huang, Hongzhan
Wu, Cathy H.
Simon, Jean
Le Bihan-Duval, Elisabeth
Duclos, Michel J.
Cogburn, Larry A.

October 2015

Publisher's PDF.Genetic selection for enhanced growth rate in meat-type chickens (Gallus domesticus)...

RNA-Seq Analysis of Abdominal Fat in Genetically Fat and Lean Chickens Highlights a Divergence in Expression of Genes Controlling Adiposity, Hemostasis, and Lipid Metabolism

Resnyk, Christopher W.
Chen, Chuming
Huang, Hongzhan
Wu, Cathy H.
Simon, Jean
Le Bihan-Duval, Elisabeth
Duclos, Michel J.
Cogburn, Larry A.

October 2015

Publisher's PDF.Genetic selection for enhanced growth rate in meat-type chickens (Gallus domesticus)...

Additional file 7: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S2. Protein profiling on liver tissues of chicken embryos. A total of 15 gels were assayed, a...

Additional file 6: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Table S5. DEGs identified in liver of E21 embryos between the fat and lean lines. (XLSX 31Â kb

Additional file 5: of Transcriptional analysis of abdominal fat in chickens divergently selected on bodyweight at two ages reveals novel mechanisms controlling adiposity: validating visceral adipose tissue as a dynamic endocrine and metabolic organ

Abstract

Extracted data

Additional file 5: of Transcriptional analysis of abdominal fat in chickens divergently selected on bodyweight at two ages reveals novel mechanisms controlling adiposity: validating visceral adipose tissue as a dynamic endocrine and metabolic organ

Abstract

Extracted data

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