Differentially expressed transcripts involved in the accumulation of sugars and fiber between the top and bottom tissues in the sugarcane culm, based on MapMan annotation.

Transcription profiling of signal transduction-related genes in sugarcane tissues

Papini-Terzi, FS
Rocha, FR
Vencio, RZN
Oliveira, KC
Felix, JD
Vicentini, R
Rocha, CD
Simoes, ACQ
Ulian, EC
Di Mauro, SMZ
Da Silva, AM
Pereira, CAD
Menossi, M
Souza, GM

November 2015

A collection of 237,954 sugarcane ESTs was examined in search of signal transduction genes. Over 3,5...

Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content

Kasirajan, Lakshmi
Hoang, Nam V.
Furtado, Agnelo
Botha, Frederik C.
Henry, Robert J.

August 2018

Sugarcane (Saccharum spp. hybrids) is a potential lignocellulosic feedstock for biofuel production d...

Identification of drought-response genes and a study of their expression during sucrose accumulation and water deficit in sugarcane culms

Iskandar, Hayati M.
Casu, Rosanne E.
Fletcher, Andrew T.
Schmidt, Susanne
Xu, Jingsheng
Maclean, Donald J.
Manners, John M.
Bonnett, Graham D.

January 2011

Background: The ability of sugarcane to accumulate high concentrations of sucrose in its culm requir...

Association of gene expression with biomass content and composition in sugarcane

Nam V. Hoang (4373227)
Agnelo Furtado (1823)
Angela J. O’Keeffe (4373221)
Frederik C. Botha (4373224)
Robert J. Henry (499069)

August 2017

<div><p>About 64% of the total aboveground biomass in sugarcane production is from the culm, of whic...

Association of gene expression with biomass content and composition in sugarcane.

Nam V Hoang
Agnelo Furtado
Angela J O'Keeffe
Frederik C Botha
Robert J Henry

January 2017

About 64% of the total aboveground biomass in sugarcane production is from the culm, of which ~90% i...

Identification of differentially expressed transcripts from maturing stem of sugarcane by in silico analysis of stem expressed sequence tags and gene expression profiling

Casu, Rosanne E.
Dimmock, Christine M.
Chapman, Scott C.
Grof, Christopher P.L.
McIntyre, C. Lynne
Bonnett, Graham D.
Manners, John M.

March 2004

Sugarcane accumulates high concentrations of sucrose in the mature stem and a number of physiologica...

Differential gene expression in sugarcane leaf and internodal tissues of varying maturity

Carson, D.L.
Huckett, B.I.
Botha, F.C.
van Staden, J.

December 2002

The expression patterns of sugarcane (Saccharum spp. hybrids) genes were examined in different tissu...

Association of variation in the sugarcane transcriptome with sugar content

Prathima P. Thirugnanasambandam
Nam V. Hoang
Agnelo Furtado
Frederick C. Botha
Robert J. Henry

November 2017

Abstract Background Sugarcane is a major crop of the tropics cultivated mainly for its high sucrose ...

Identification of transcripts associated with cell wall metabolism and development in the stem of sugarcane by Affymetrix GeneChip Sugarcane Genome Array expression profiling

Casu, RE
Jarmey, JM
Bonnett, GD
Manners, JM

January 2007

Sugarcane is an important crop in tropical regions of the world, producing a very large biomass and ...

An overview of the differentially expressed transcripts mapped onto the metabolic pathways.

Ghana Shyam Challa (5931602)
Wanlong Li (102234)

November 2018

The differentially expressed genes were mapped onto the metabolic pathways using MAPMAN software. Ea...

Additional file 9: Figure S4. of Association of variation in the sugarcane transcriptome with sugar content

Prathima Thirugnanasambandam (4041584)
Nam Hoang (4041575)
Agnelo Furtado (1823)
Frederick Botha (4616092)
Robert Henry (108785)

November 2017

Blast2GO and KEGG Mapping for DEGs in the SOGI-DGE with respect to starch and sucrose metabolism. Fi...

De novo assembly and characterizing of the culm-derived meta-transcriptome from the polyploid sugarcane genome based on coding transcripts

Hoang, Nam V.
Furtado, Agnelo
Thirugnanasambandam, Prathima P.
Botha, Frederik C.
Henry, Robert J.

March 2018

Sugarcane biomass has been used for sugar, bioenergy and biomaterial production. The majority of the...

Genetic and expression profiling in sugarcane

Casu, R
Dimmock, C
Thomas, M
Bower, N
Knight, D
Grof, C
McIntyre, L
Jackson, P
Jordan, D
Whan,
Drenth, J
Tao, Y
Manners, J

January 2001

Commercial varieties of sugarcane accumulate up to 50-60% of the dry weight of stem tissues as sucro...

MapMan overview of differentially expressed genes in sugarcane SP70-1143 colonized or not with <i>G. diazotrophicus</i> and subjected to water deficit.

Lívia Vargas (671968)
Ailton B. Santa Brígida (671969)
José P. Mota Filho (671970)
Thais G. de Carvalho (671971)
Cristian A. Rojas (671972)
Dries Vaneechoutte (671973)
Michiel Van Bel (671974)
Laurent Farrinelli (671975)
Paulo C. G. Ferreira (605671)
Klaas Vandepoele (23662)
Adriana S. Hemerly (671976)

December 2014

<p>MapMan ‘regulation overview’ of differentially expressed genes (DEG) from roots and shoots in two...

Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane

Thirugnanasambandam, Prathima P.
Mason, Patrick J.
Hoang, Nam V.
Furtado, Agnelo
Botha, Frederik C.
Henry, Robert J.

April 2019

Sugarcane accumulates very high levels of sucrose in the culm. Elucidation of the molecular mechanis...

Transcription profiling of signal transduction-related genes in sugarcane tissues

Papini-Terzi, FS
Rocha, FR
Vencio, RZN
Oliveira, KC
Felix, JD
Vicentini, R
Rocha, CD
Simoes, ACQ
Ulian, EC
Di Mauro, SMZ
Da Silva, AM
Pereira, CAD
Menossi, M
Souza, GM

November 2015

A collection of 237,954 sugarcane ESTs was examined in search of signal transduction genes. Over 3,5...

Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content

Kasirajan, Lakshmi
Hoang, Nam V.
Furtado, Agnelo
Botha, Frederik C.
Henry, Robert J.

August 2018

Sugarcane (Saccharum spp. hybrids) is a potential lignocellulosic feedstock for biofuel production d...

Identification of drought-response genes and a study of their expression during sucrose accumulation and water deficit in sugarcane culms

Iskandar, Hayati M.
Casu, Rosanne E.
Fletcher, Andrew T.
Schmidt, Susanne
Xu, Jingsheng
Maclean, Donald J.
Manners, John M.
Bonnett, Graham D.

January 2011

Background: The ability of sugarcane to accumulate high concentrations of sucrose in its culm requir...

Association of gene expression with biomass content and composition in sugarcane

Nam V. Hoang (4373227)
Agnelo Furtado (1823)
Angela J. O’Keeffe (4373221)
Frederik C. Botha (4373224)
Robert J. Henry (499069)

August 2017

<div><p>About 64% of the total aboveground biomass in sugarcane production is from the culm, of whic...

Association of gene expression with biomass content and composition in sugarcane.

Nam V Hoang
Agnelo Furtado
Angela J O'Keeffe
Frederik C Botha
Robert J Henry

January 2017

About 64% of the total aboveground biomass in sugarcane production is from the culm, of which ~90% i...

Identification of differentially expressed transcripts from maturing stem of sugarcane by in silico analysis of stem expressed sequence tags and gene expression profiling

Casu, Rosanne E.
Dimmock, Christine M.
Chapman, Scott C.
Grof, Christopher P.L.
McIntyre, C. Lynne
Bonnett, Graham D.
Manners, John M.

March 2004

Sugarcane accumulates high concentrations of sucrose in the mature stem and a number of physiologica...

Differential gene expression in sugarcane leaf and internodal tissues of varying maturity

Carson, D.L.
Huckett, B.I.
Botha, F.C.
van Staden, J.

December 2002

The expression patterns of sugarcane (Saccharum spp. hybrids) genes were examined in different tissu...

Association of variation in the sugarcane transcriptome with sugar content

Prathima P. Thirugnanasambandam
Nam V. Hoang
Agnelo Furtado
Frederick C. Botha
Robert J. Henry

November 2017

Abstract Background Sugarcane is a major crop of the tropics cultivated mainly for its high sucrose ...

Identification of transcripts associated with cell wall metabolism and development in the stem of sugarcane by Affymetrix GeneChip Sugarcane Genome Array expression profiling

Casu, RE
Jarmey, JM
Bonnett, GD
Manners, JM

January 2007

Sugarcane is an important crop in tropical regions of the world, producing a very large biomass and ...

An overview of the differentially expressed transcripts mapped onto the metabolic pathways.

Ghana Shyam Challa (5931602)
Wanlong Li (102234)

November 2018

The differentially expressed genes were mapped onto the metabolic pathways using MAPMAN software. Ea...

Additional file 9: Figure S4. of Association of variation in the sugarcane transcriptome with sugar content

Prathima Thirugnanasambandam (4041584)
Nam Hoang (4041575)
Agnelo Furtado (1823)
Frederick Botha (4616092)
Robert Henry (108785)

November 2017

Blast2GO and KEGG Mapping for DEGs in the SOGI-DGE with respect to starch and sucrose metabolism. Fi...

De novo assembly and characterizing of the culm-derived meta-transcriptome from the polyploid sugarcane genome based on coding transcripts

Hoang, Nam V.
Furtado, Agnelo
Thirugnanasambandam, Prathima P.
Botha, Frederik C.
Henry, Robert J.

March 2018

Sugarcane biomass has been used for sugar, bioenergy and biomaterial production. The majority of the...

Genetic and expression profiling in sugarcane

Casu, R
Dimmock, C
Thomas, M
Bower, N
Knight, D
Grof, C
McIntyre, L
Jackson, P
Jordan, D
Whan,
Drenth, J
Tao, Y
Manners, J

January 2001

Commercial varieties of sugarcane accumulate up to 50-60% of the dry weight of stem tissues as sucro...

MapMan overview of differentially expressed genes in sugarcane SP70-1143 colonized or not with <i>G. diazotrophicus</i> and subjected to water deficit.

Lívia Vargas (671968)
Ailton B. Santa Brígida (671969)
José P. Mota Filho (671970)
Thais G. de Carvalho (671971)
Cristian A. Rojas (671972)
Dries Vaneechoutte (671973)
Michiel Van Bel (671974)
Laurent Farrinelli (671975)
Paulo C. G. Ferreira (605671)
Klaas Vandepoele (23662)
Adriana S. Hemerly (671976)

December 2014

<p>MapMan ‘regulation overview’ of differentially expressed genes (DEG) from roots and shoots in two...

Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane

Thirugnanasambandam, Prathima P.
Mason, Patrick J.
Hoang, Nam V.
Furtado, Agnelo
Botha, Frederik C.
Henry, Robert J.

April 2019

Sugarcane accumulates very high levels of sucrose in the culm. Elucidation of the molecular mechanis...

Transcription profiling of signal transduction-related genes in sugarcane tissues

Papini-Terzi, FS
Rocha, FR
Vencio, RZN
Oliveira, KC
Felix, JD
Vicentini, R
Rocha, CD
Simoes, ACQ
Ulian, EC
Di Mauro, SMZ
Da Silva, AM
Pereira, CAD
Menossi, M
Souza, GM

November 2015

A collection of 237,954 sugarcane ESTs was examined in search of signal transduction genes. Over 3,5...

Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content

Kasirajan, Lakshmi
Hoang, Nam V.
Furtado, Agnelo
Botha, Frederik C.
Henry, Robert J.

August 2018

Sugarcane (Saccharum spp. hybrids) is a potential lignocellulosic feedstock for biofuel production d...

Identification of drought-response genes and a study of their expression during sucrose accumulation and water deficit in sugarcane culms

Iskandar, Hayati M.
Casu, Rosanne E.
Fletcher, Andrew T.
Schmidt, Susanne
Xu, Jingsheng
Maclean, Donald J.
Manners, John M.
Bonnett, Graham D.

January 2011

Background: The ability of sugarcane to accumulate high concentrations of sucrose in its culm requir...

Differentially expressed transcripts involved in the accumulation of sugars and fiber between the top and bottom tissues in the sugarcane culm, based on MapMan annotation.

Abstract

Extracted data

Differentially expressed transcripts involved in the accumulation of sugars and fiber between the top and bottom tissues in the sugarcane culm, based on MapMan annotation.

Abstract

Extracted data

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