Additional file 9: Table S8. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

Additional file 8: of Metabolomics of oncogene-specific metabolic reprogramming during breast cancer

Chen Dai (1472875)
Jennifer Arceo (5049659)
James Arnold (5049656)
Arun Sreekumar (213586)
Norman Dovichi (5049662)
Jun Li (6494)
Laurie Littlepage (3520598)

April 2018

List of model specific metabolites. Related to Fig.Â 2. Model specific metabolites were determined b...

Additional file 2: of Loss of Msh2 and a single-radiation hit induce common, genome-wide, and persistent epigenetic changes in the intestine

Maria Herberg (363903)
Susann Siebert (6642896)
Marianne Quaas (409028)
Torsten Thalheim (6642902)
Karen Rother (409032)
Michelle Hussong (5541935)
Janine AltmĂźller (3469979)
Christiane Kerner (367903)
Joerg Galle (52392)
Michal Schweiger (5541926)
Gabriela Aust (233528)

April 2019

Peak characteristics of histone methylations of mouse intestinal samples [54]. (DOCX 543Â kb

Additional file 2: of Impact of inflammatory signaling on radiation biodosimetry: mouse model of inflammatory bowel disease

Sanjay Mukherjee (1308711)
Evagelia Laiakis (6660512)
Albert Fornace (6660515)
Sally Amundson (3455204)

May 2019

A. Genes showing significant differences in expression levels between WT and Il10−/− mice prior to r...

Additional file 6: Table S5. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

David Casero (733368)
Kirandeep Gill (2615413)
Vijayalakshmi Sridharan (435511)
Igor Koturbash (825322)
Gregory Nelson (1376886)
Martin Hauer-Jensen (225286)
Marjan Boerma (435517)
Jonathan Braun (45815)
Amrita Cheema (599567)

August 2017

Constrained analysis of principal coordinates (db-RDA method) for 16S rRNA counts at the phylotype l...

Additional file 2: Table S2. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

David Casero (733368)
Kirandeep Gill (2615413)
Vijayalakshmi Sridharan (435511)
Igor Koturbash (825322)
Gregory Nelson (1376886)
Martin Hauer-Jensen (225286)
Marjan Boerma (435517)
Jonathan Braun (45815)
Amrita Cheema (599567)

August 2017

Group significance analysis of 16S rRNA counts at different taxonomic levels. (XLS 61Â kb

Additional file 1: Table 1. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

David Casero (733368)
Kirandeep Gill (2615413)
Vijayalakshmi Sridharan (435511)
Igor Koturbash (825322)
Gregory Nelson (1376886)
Martin Hauer-Jensen (225286)
Marjan Boerma (435517)
Jonathan Braun (45815)
Amrita Cheema (599567)

August 2017

Diversity analysis of 16S rRNA sequencing samples. Alpha and beta diversity groups comparison statis...

Additional file 6 of The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

Wanchang Cui (209206)
Lisa Hull (5946470)
Alex Zizzo (16951532)
Li Wang (15202)
Bin Lin (302181)
Min Zhai (34695)
Mang Xiao (163329)

September 2023

Supp Fig. S6. PCOA of IL-18 knockout and wild type mice ITS sequences. (a) the PCOA of all mice, (b)...

Additional file 4 of The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

Wanchang Cui (209206)
Lisa Hull (5946470)
Alex Zizzo (16951532)
Li Wang (15202)
Bin Lin (302181)
Min Zhai (34695)
Mang Xiao (163329)

September 2023

Supp Fig. S4. Alpha rarefaction of forward reading. X-axis is the sequence depth and Y-axis is the S...

Additional file 3 of The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

Wanchang Cui (209206)
Lisa Hull (5946470)
Alex Zizzo (16951532)
Li Wang (15202)
Bin Lin (302181)
Min Zhai (34695)
Mang Xiao (163329)

September 2023

Supp Fig. S3. Per sequence quality scores of each 16S rRNA reading. Each green line represents one s...

Additional file 11 of The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

Wanchang Cui (209206)
Lisa Hull (5946470)
Alex Zizzo (16951532)
Li Wang (15202)
Bin Lin (302181)
Min Zhai (34695)
Mang Xiao (163329)

September 2023

Supp Table 5. Detailed list of significantly correlated bacteria genera of the pure IL-18 knockout a...

Additional file 9 of The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

Wanchang Cui (209206)
Lisa Hull (5946470)
Alex Zizzo (16951532)
Li Wang (15202)
Bin Lin (302181)
Min Zhai (34695)
Mang Xiao (163329)

September 2023

Supp Table 3. Detailed list of significantly changed bacterial genera of the pure IL-18 knockout and...

Additional file 10 of The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

Wanchang Cui (209206)
Lisa Hull (5946470)
Alex Zizzo (16951532)
Li Wang (15202)
Bin Lin (302181)
Min Zhai (34695)
Mang Xiao (163329)

September 2023

Supp Table 4. Detailed list of significantly changed bacteria of the pure IL-18 knockout and wild ty...

Additional file 2 of The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

Wanchang Cui (209206)
Lisa Hull (5946470)
Alex Zizzo (16951532)
Li Wang (15202)
Bin Lin (302181)
Min Zhai (34695)
Mang Xiao (163329)

September 2023

Supp Fig. S2. Mean quality scores of each 16S rRNA reading. Green colour represents forward reading ...

Additional file 1 of The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

Wanchang Cui (209206)
Lisa Hull (5946470)
Alex Zizzo (16951532)
Li Wang (15202)
Bin Lin (302181)
Min Zhai (34695)
Mang Xiao (163329)

September 2023

Supp Fig. S1. FastQC sequence count of each 16S rRNA reading. Number of reads for each sample were s...

Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

David Casero
Kirandeep Gill
Vijayalakshmi Sridharan
Igor Koturbash
Gregory Nelson
Martin Hauer-Jensen
Marjan Boerma
Jonathan Braun
Amrita K. Cheema

August 2017

Abstract Background Space travel is associated with continuous low dose rate exposure to high linear...

Additional file 8: of Metabolomics of oncogene-specific metabolic reprogramming during breast cancer

Chen Dai (1472875)
Jennifer Arceo (5049659)
James Arnold (5049656)
Arun Sreekumar (213586)
Norman Dovichi (5049662)
Jun Li (6494)
Laurie Littlepage (3520598)

April 2018

List of model specific metabolites. Related to Fig.Â 2. Model specific metabolites were determined b...

Additional file 2: of Loss of Msh2 and a single-radiation hit induce common, genome-wide, and persistent epigenetic changes in the intestine

Maria Herberg (363903)
Susann Siebert (6642896)
Marianne Quaas (409028)
Torsten Thalheim (6642902)
Karen Rother (409032)
Michelle Hussong (5541935)
Janine AltmĂźller (3469979)
Christiane Kerner (367903)
Joerg Galle (52392)
Michal Schweiger (5541926)
Gabriela Aust (233528)

April 2019

Peak characteristics of histone methylations of mouse intestinal samples [54]. (DOCX 543Â kb

Additional file 2: of Impact of inflammatory signaling on radiation biodosimetry: mouse model of inflammatory bowel disease

Sanjay Mukherjee (1308711)
Evagelia Laiakis (6660512)
Albert Fornace (6660515)
Sally Amundson (3455204)

May 2019

A. Genes showing significant differences in expression levels between WT and Il10−/− mice prior to r...

Additional file 6: Table S5. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

David Casero (733368)
Kirandeep Gill (2615413)
Vijayalakshmi Sridharan (435511)
Igor Koturbash (825322)
Gregory Nelson (1376886)
Martin Hauer-Jensen (225286)
Marjan Boerma (435517)
Jonathan Braun (45815)
Amrita Cheema (599567)

August 2017

Constrained analysis of principal coordinates (db-RDA method) for 16S rRNA counts at the phylotype l...

Additional file 2: Table S2. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

David Casero (733368)
Kirandeep Gill (2615413)
Vijayalakshmi Sridharan (435511)
Igor Koturbash (825322)
Gregory Nelson (1376886)
Martin Hauer-Jensen (225286)
Marjan Boerma (435517)
Jonathan Braun (45815)
Amrita Cheema (599567)

August 2017

Group significance analysis of 16S rRNA counts at different taxonomic levels. (XLS 61Â kb

Additional file 1: Table 1. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

David Casero (733368)
Kirandeep Gill (2615413)
Vijayalakshmi Sridharan (435511)
Igor Koturbash (825322)
Gregory Nelson (1376886)
Martin Hauer-Jensen (225286)
Marjan Boerma (435517)
Jonathan Braun (45815)
Amrita Cheema (599567)

August 2017

Diversity analysis of 16S rRNA sequencing samples. Alpha and beta diversity groups comparison statis...

Additional file 6 of The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

Wanchang Cui (209206)
Lisa Hull (5946470)
Alex Zizzo (16951532)
Li Wang (15202)
Bin Lin (302181)
Min Zhai (34695)
Mang Xiao (163329)

September 2023

Supp Fig. S6. PCOA of IL-18 knockout and wild type mice ITS sequences. (a) the PCOA of all mice, (b)...

Additional file 4 of The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

Wanchang Cui (209206)
Lisa Hull (5946470)
Alex Zizzo (16951532)
Li Wang (15202)
Bin Lin (302181)
Min Zhai (34695)
Mang Xiao (163329)

September 2023

Supp Fig. S4. Alpha rarefaction of forward reading. X-axis is the sequence depth and Y-axis is the S...

Additional file 3 of The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

Wanchang Cui (209206)
Lisa Hull (5946470)
Alex Zizzo (16951532)
Li Wang (15202)
Bin Lin (302181)
Min Zhai (34695)
Mang Xiao (163329)

September 2023

Supp Fig. S3. Per sequence quality scores of each 16S rRNA reading. Each green line represents one s...

Additional file 11 of The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

Wanchang Cui (209206)
Lisa Hull (5946470)
Alex Zizzo (16951532)
Li Wang (15202)
Bin Lin (302181)
Min Zhai (34695)
Mang Xiao (163329)

September 2023

Supp Table 5. Detailed list of significantly correlated bacteria genera of the pure IL-18 knockout a...

Additional file 9 of The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

Wanchang Cui (209206)
Lisa Hull (5946470)
Alex Zizzo (16951532)
Li Wang (15202)
Bin Lin (302181)
Min Zhai (34695)
Mang Xiao (163329)

September 2023

Supp Table 3. Detailed list of significantly changed bacterial genera of the pure IL-18 knockout and...

Additional file 10 of The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

Wanchang Cui (209206)
Lisa Hull (5946470)
Alex Zizzo (16951532)
Li Wang (15202)
Bin Lin (302181)
Min Zhai (34695)
Mang Xiao (163329)

September 2023

Supp Table 4. Detailed list of significantly changed bacteria of the pure IL-18 knockout and wild ty...

Additional file 2 of The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

Wanchang Cui (209206)
Lisa Hull (5946470)
Alex Zizzo (16951532)
Li Wang (15202)
Bin Lin (302181)
Min Zhai (34695)
Mang Xiao (163329)

September 2023

Supp Fig. S2. Mean quality scores of each 16S rRNA reading. Green colour represents forward reading ...

Additional file 1 of The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

Wanchang Cui (209206)
Lisa Hull (5946470)
Alex Zizzo (16951532)
Li Wang (15202)
Bin Lin (302181)
Min Zhai (34695)
Mang Xiao (163329)

September 2023

Supp Fig. S1. FastQC sequence count of each 16S rRNA reading. Number of reads for each sample were s...

Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

David Casero
Kirandeep Gill
Vijayalakshmi Sridharan
Igor Koturbash
Gregory Nelson
Martin Hauer-Jensen
Marjan Boerma
Jonathan Braun
Amrita K. Cheema

August 2017

Abstract Background Space travel is associated with continuous low dose rate exposure to high linear...

Additional file 8: of Metabolomics of oncogene-specific metabolic reprogramming during breast cancer

Chen Dai (1472875)
Jennifer Arceo (5049659)
James Arnold (5049656)
Arun Sreekumar (213586)
Norman Dovichi (5049662)
Jun Li (6494)
Laurie Littlepage (3520598)

April 2018

List of model specific metabolites. Related to Fig.Â 2. Model specific metabolites were determined b...

Additional file 2: of Loss of Msh2 and a single-radiation hit induce common, genome-wide, and persistent epigenetic changes in the intestine

Maria Herberg (363903)
Susann Siebert (6642896)
Marianne Quaas (409028)
Torsten Thalheim (6642902)
Karen Rother (409032)
Michelle Hussong (5541935)
Janine AltmĂźller (3469979)
Christiane Kerner (367903)
Joerg Galle (52392)
Michal Schweiger (5541926)
Gabriela Aust (233528)

April 2019

Peak characteristics of histone methylations of mouse intestinal samples [54]. (DOCX 543Â kb

Additional file 2: of Impact of inflammatory signaling on radiation biodosimetry: mouse model of inflammatory bowel disease

Sanjay Mukherjee (1308711)
Evagelia Laiakis (6660512)
Albert Fornace (6660515)
Sally Amundson (3455204)

May 2019

A. Genes showing significant differences in expression levels between WT and Il10−/− mice prior to r...

Additional file 9: Table S8. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

Abstract

Extracted data

Additional file 9: Table S8. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

Abstract

Extracted data

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