Additional file 4: Figure S2. of Genetic and codon usage bias analyses of polymerase genes of equine influenza virus and its relation to evolution

Analysis of codon usage and nucleotide composition bias in polioviruses

Gu Yuan-xing
Ding Yao-zhong
Ma Li-na
Chen Hao-tai
Zhou Jian-hua
Liu Wen-qian
Wang Meng
Zhang Jie
Liu Yong-sheng

March 2011

Abstract Background Poliovirus, the causative agent of poliomyelitis, is a human enterovirus and a m...

Analysis of synonymous codon usage in spike protein gene of infectious bronchitis virus

Makhija, Aditi
Kumar, Sachin

August 2015

Infectious bronchitis virus (IBV) is responsible for causing respiratory, renal and urogenital disea...

Codon usage comparison of novel genes in clinical isolates of Haemophilus influenzae. Nucleic Acids Res

John Gladitz
Kai Shen
Patricia Antalis
Fen Ze Hu
J. Christopher Post
Garth D. Ehrlich

January 2005

A similarity statistic for codon usage was developed and used to compare novel gene sequences found ...

Additional file 1: Table S1a. of Genetic and codon usage bias analyses of polymerase genes of equine influenza virus and its relation to evolution

Bidhan Ch. Bera (4383163)
Nitin Virmani (749243)
Naveen Kumar (66313)
Taruna Anand (828898)
S Pavulraj (4383166)
Adam Rash (3493286)
Debra Elton (29877)
Nicola Rash (4383160)
Sandeep Bhatia (2633815)
Richa Sood (2633812)
Raj Singh (103123)
Bhupendra Tripathi (4383157)

August 2017

Consensus amino acid changes in the predicted PA protein compared to Richmond/1/07; Table S1b. Conse...

Additional file 6: Table S6a. of Genetic and codon usage bias analyses of polymerase genes of equine influenza virus and its relation to evolution

Bidhan Ch. Bera (4383163)
Nitin Virmani (749243)
Naveen Kumar (66313)
Taruna Anand (828898)
S Pavulraj (4383166)
Adam Rash (3493286)
Debra Elton (29877)
Nicola Rash (4383160)
Sandeep Bhatia (2633815)
Richa Sood (2633812)
Raj Singh (103123)
Bhupendra Tripathi (4383157)

August 2017

Correlation analysis among length (amino acid), GRAVY, AROMO, ENC, GC3s, ENc and the first two princ...

Not Available

B. C. Bera, Virmani N, Kumar N, Anand T, Pavulraj S, Rash A, Elton D, Rash N, Bhatia S, Sood R, Singh RK, Tripathi BN

August 2017

Not AvailableBackground Equine influenza is a major health problem of equines worldwide. The polyme...

Revelation of Influencing Factors in Overall Codon Usage Bias of Equine Influenza Viruses.

Naveen Kumar
Bidhan Chandra Bera
Benjamin D Greenbaum
Sandeep Bhatia
Richa Sood
Pavulraj Selvaraj
Taruna Anand
Bhupendra Nath Tripathi
Nitin Virmani

Equine influenza viruses (EIVs) of H3N8 subtype are culprits of severe acute respiratory infections ...

Additional file 2: Figure S1. of Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

Izza Nasrullah (144044)
Azeem Butt (3566723)
Shifa Tahir (144050)
Muhammad Idrees (92773)
Yigang Tong (36054)

August 2015

Comparative analysis of relative synonymous codon usage (RSCU) patterns between MARV, H. sapiens, an...

Codon usage bias and the evolution of influenza A viruses. Codon Usage Biases of Influenza Virus

Wong, Emily
Smith, David
Rabadan, Raul
Peiris, Malik
Poon, Leo

January 2010

The influenza A virus is an important infectious cause of morbidity and mortality in humans and was ...

Comprehensive analysis of the codon usage patterns in the envelope glycoprotein E2 gene of the classical swine fever virus.

Ye Chen
Xinxin Li
Xiaojuan Chi
Song Wang
Yanmei Ma
Jilong Chen

January 2017

The classical swine fever virus (CSFV), circulating worldwide, is a highly contagious virus. Since t...

Additional file 1: of Rapid evolution of the PB1-F2 virulence protein expressed by human seasonal H3N2 influenza viruses reduces inflammatory responses to infection

Julie McAuley (4383190)
Yi-Mo Deng (215993)
Brad Gilbertson (394938)
Charley Mackenzie-Kludas (4383187)
Ian Barr (179772)
Lorena Brown (143164)

August 2017

Figure S1. Comparison of the predicted amino acid sequence of PB1-F2 proteins expressed by H3N2 viru...

Additional file 4: Figure S2. of Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

Izza Nasrullah (144044)
Azeem Butt (3566723)
Shifa Tahir (144050)
Muhammad Idrees (92773)
Yigang Tong (36054)

August 2015

Heatmap-based representation of clustering of RSCU values of MARV, H. sapiens, and R. aegyptiacus. (...

Codon Usage Bias Prefers AT Bases in Coding Sequences Among the Essential Genes of Haemophilus influenzae

Chakraborty Supriyo
Paul Prosenjit
Tarikul Huda Mazumder

September 2016

The base composition at three different codon positions in relation to codon usage bias and gene exp...

Comparison of synonymous codon distribution patterns of bacteriophage and host genomes. DNA Research 5

Takashi Kunisawa
Shigehiko Kanaya

January 1998

Synonymous codon usage patterns of bacteriophage and host genomes were compared. Two indexes, G + C ...

Analysis of codon usage bias of classical swine fever virus

Sharanagouda S. Patil
Uma Bharathi Indrabalan
Kuralayanapalya Puttahonnappa Suresh
Bibek Ranjan Shome

June 2021

Background and Aim: Classical swine fever (CSF), caused by CSF virus (CSFV), is a highly contagious ...

Analysis of codon usage and nucleotide composition bias in polioviruses

Gu Yuan-xing
Ding Yao-zhong
Ma Li-na
Chen Hao-tai
Zhou Jian-hua
Liu Wen-qian
Wang Meng
Zhang Jie
Liu Yong-sheng

March 2011

Abstract Background Poliovirus, the causative agent of poliomyelitis, is a human enterovirus and a m...

Analysis of synonymous codon usage in spike protein gene of infectious bronchitis virus

Makhija, Aditi
Kumar, Sachin

August 2015

Infectious bronchitis virus (IBV) is responsible for causing respiratory, renal and urogenital disea...

Codon usage comparison of novel genes in clinical isolates of Haemophilus influenzae. Nucleic Acids Res

John Gladitz
Kai Shen
Patricia Antalis
Fen Ze Hu
J. Christopher Post
Garth D. Ehrlich

January 2005

A similarity statistic for codon usage was developed and used to compare novel gene sequences found ...

Additional file 1: Table S1a. of Genetic and codon usage bias analyses of polymerase genes of equine influenza virus and its relation to evolution

Bidhan Ch. Bera (4383163)
Nitin Virmani (749243)
Naveen Kumar (66313)
Taruna Anand (828898)
S Pavulraj (4383166)
Adam Rash (3493286)
Debra Elton (29877)
Nicola Rash (4383160)
Sandeep Bhatia (2633815)
Richa Sood (2633812)
Raj Singh (103123)
Bhupendra Tripathi (4383157)

August 2017

Consensus amino acid changes in the predicted PA protein compared to Richmond/1/07; Table S1b. Conse...

Additional file 6: Table S6a. of Genetic and codon usage bias analyses of polymerase genes of equine influenza virus and its relation to evolution

Bidhan Ch. Bera (4383163)
Nitin Virmani (749243)
Naveen Kumar (66313)
Taruna Anand (828898)
S Pavulraj (4383166)
Adam Rash (3493286)
Debra Elton (29877)
Nicola Rash (4383160)
Sandeep Bhatia (2633815)
Richa Sood (2633812)
Raj Singh (103123)
Bhupendra Tripathi (4383157)

August 2017

Correlation analysis among length (amino acid), GRAVY, AROMO, ENC, GC3s, ENc and the first two princ...

Not Available

B. C. Bera, Virmani N, Kumar N, Anand T, Pavulraj S, Rash A, Elton D, Rash N, Bhatia S, Sood R, Singh RK, Tripathi BN

August 2017

Not AvailableBackground Equine influenza is a major health problem of equines worldwide. The polyme...

Revelation of Influencing Factors in Overall Codon Usage Bias of Equine Influenza Viruses.

Naveen Kumar
Bidhan Chandra Bera
Benjamin D Greenbaum
Sandeep Bhatia
Richa Sood
Pavulraj Selvaraj
Taruna Anand
Bhupendra Nath Tripathi
Nitin Virmani

Equine influenza viruses (EIVs) of H3N8 subtype are culprits of severe acute respiratory infections ...

Additional file 2: Figure S1. of Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

Izza Nasrullah (144044)
Azeem Butt (3566723)
Shifa Tahir (144050)
Muhammad Idrees (92773)
Yigang Tong (36054)

August 2015

Comparative analysis of relative synonymous codon usage (RSCU) patterns between MARV, H. sapiens, an...

Codon usage bias and the evolution of influenza A viruses. Codon Usage Biases of Influenza Virus

Wong, Emily
Smith, David
Rabadan, Raul
Peiris, Malik
Poon, Leo

January 2010

The influenza A virus is an important infectious cause of morbidity and mortality in humans and was ...

Comprehensive analysis of the codon usage patterns in the envelope glycoprotein E2 gene of the classical swine fever virus.

Ye Chen
Xinxin Li
Xiaojuan Chi
Song Wang
Yanmei Ma
Jilong Chen

January 2017

The classical swine fever virus (CSFV), circulating worldwide, is a highly contagious virus. Since t...

Additional file 1: of Rapid evolution of the PB1-F2 virulence protein expressed by human seasonal H3N2 influenza viruses reduces inflammatory responses to infection

Julie McAuley (4383190)
Yi-Mo Deng (215993)
Brad Gilbertson (394938)
Charley Mackenzie-Kludas (4383187)
Ian Barr (179772)
Lorena Brown (143164)

August 2017

Figure S1. Comparison of the predicted amino acid sequence of PB1-F2 proteins expressed by H3N2 viru...

Additional file 4: Figure S2. of Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

Izza Nasrullah (144044)
Azeem Butt (3566723)
Shifa Tahir (144050)
Muhammad Idrees (92773)
Yigang Tong (36054)

August 2015

Heatmap-based representation of clustering of RSCU values of MARV, H. sapiens, and R. aegyptiacus. (...

Codon Usage Bias Prefers AT Bases in Coding Sequences Among the Essential Genes of Haemophilus influenzae

Chakraborty Supriyo
Paul Prosenjit
Tarikul Huda Mazumder

September 2016

The base composition at three different codon positions in relation to codon usage bias and gene exp...

Comparison of synonymous codon distribution patterns of bacteriophage and host genomes. DNA Research 5

Takashi Kunisawa
Shigehiko Kanaya

January 1998

Synonymous codon usage patterns of bacteriophage and host genomes were compared. Two indexes, G + C ...

Analysis of codon usage bias of classical swine fever virus

Sharanagouda S. Patil
Uma Bharathi Indrabalan
Kuralayanapalya Puttahonnappa Suresh
Bibek Ranjan Shome

June 2021

Background and Aim: Classical swine fever (CSF), caused by CSF virus (CSFV), is a highly contagious ...

Analysis of codon usage and nucleotide composition bias in polioviruses

Gu Yuan-xing
Ding Yao-zhong
Ma Li-na
Chen Hao-tai
Zhou Jian-hua
Liu Wen-qian
Wang Meng
Zhang Jie
Liu Yong-sheng

March 2011

Abstract Background Poliovirus, the causative agent of poliomyelitis, is a human enterovirus and a m...

Analysis of synonymous codon usage in spike protein gene of infectious bronchitis virus

Makhija, Aditi
Kumar, Sachin

August 2015

Infectious bronchitis virus (IBV) is responsible for causing respiratory, renal and urogenital disea...

Codon usage comparison of novel genes in clinical isolates of Haemophilus influenzae. Nucleic Acids Res

John Gladitz
Kai Shen
Patricia Antalis
Fen Ze Hu
J. Christopher Post
Garth D. Ehrlich

January 2005

A similarity statistic for codon usage was developed and used to compare novel gene sequences found ...

Additional file 4: Figure S2. of Genetic and codon usage bias analyses of polymerase genes of equine influenza virus and its relation to evolution

Abstract

Extracted data

Additional file 4: Figure S2. of Genetic and codon usage bias analyses of polymerase genes of equine influenza virus and its relation to evolution

Abstract

Extracted data

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