Text S2. Bioinformatic processing of amplicon sequencing. Commands ran to process to bacterial and fungal sequencing reads, from raw sequences to OTU table and taxonomic identification. (TXT 8Â kb
Gene clusters of secondary metabolites synthesis in B.amyloliquefaciens TF28 and B.amyloliquefaciens...
Supplementary Table S2. General information about the organisms used in this study. (TXT 5 kb
Control samples for 16S rRNA gene sequencing. A Qiime generated OTU table for the positive and negat...
Table S1. OTUs identified as contamination and removed from OTU table. Outlines OTUs that were ident...
Unknown sequence challenge, upregulated DE Basidiomycota blastn and additional transcriptomic method...
otu_processing.sh pipeline. Contains code for sequence quality control and OTU-picking. (SH 2Â kb
Commands used for the analyses in this study. Note that the original file paths have been retained h...
Bacterial and Fungal Diversity Index. Table S2. Mapping File used for MOTHUR pipeline. (DOCX 18Â kb
List of fungal reference genomes included in the kraken database to identify microbial reads in non-...
This text file contains a record of the sequence processing steps that were performed on the Strepto...
Table S1. Mutagenesis, amplification and sequencing primers in the plasmid system. Amplification/seq...
Flanking sequences. Flanking sequences used for the E. coli, K. pneumoniae, S. pseudintermedius, P. ...
Table S1. Accuracy of taxonomic assignments of 18S and 28S rRNA variable genetic regions. Related to...
Figure S1. Distribution of key bacterial taxa in the biofilm community obtained by DNA and mRNA deep...
Table S1. Gives an accounting of sequence reads through processing, reference searching, and binning...
Gene clusters of secondary metabolites synthesis in B.amyloliquefaciens TF28 and B.amyloliquefaciens...
Supplementary Table S2. General information about the organisms used in this study. (TXT 5 kb
Control samples for 16S rRNA gene sequencing. A Qiime generated OTU table for the positive and negat...
Table S1. OTUs identified as contamination and removed from OTU table. Outlines OTUs that were ident...
Unknown sequence challenge, upregulated DE Basidiomycota blastn and additional transcriptomic method...
otu_processing.sh pipeline. Contains code for sequence quality control and OTU-picking. (SH 2Â kb
Commands used for the analyses in this study. Note that the original file paths have been retained h...
Bacterial and Fungal Diversity Index. Table S2. Mapping File used for MOTHUR pipeline. (DOCX 18Â kb
List of fungal reference genomes included in the kraken database to identify microbial reads in non-...
This text file contains a record of the sequence processing steps that were performed on the Strepto...
Table S1. Mutagenesis, amplification and sequencing primers in the plasmid system. Amplification/seq...
Flanking sequences. Flanking sequences used for the E. coli, K. pneumoniae, S. pseudintermedius, P. ...
Table S1. Accuracy of taxonomic assignments of 18S and 28S rRNA variable genetic regions. Related to...
Figure S1. Distribution of key bacterial taxa in the biofilm community obtained by DNA and mRNA deep...
Table S1. Gives an accounting of sequence reads through processing, reference searching, and binning...
Gene clusters of secondary metabolites synthesis in B.amyloliquefaciens TF28 and B.amyloliquefaciens...
Supplementary Table S2. General information about the organisms used in this study. (TXT 5 kb
Control samples for 16S rRNA gene sequencing. A Qiime generated OTU table for the positive and negat...