Additional file 7: Table S4. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms

Additional file 4: Table S3. of Type 1 diabetes susceptibility alleles are associated with distinct alterations in the gut microbiota

Jane Mullaney (4861261)
Juliette Stephens (4861264)
Mary-Ellen Costello (703611)
Cai Fong (4861258)
Brooke Geeling (4861255)
Patrick Gavin (3071853)
Casey Wright (3764194)
Timothy Spector (348486)
Matthew Brown (307585)
Emma Hamilton-Williams (4861252)

February 2018

T1D-associated SNPs used for risk score calculation. Related to Fig.Â 7. (XLSX 49Â kb

Additional file 1: Table S1. of Strong epistatic and additive effects of linked candidate SNPs for Drosophila pigmentation have implications for analysis of genome-wide association studies results

Jean-Michel Gibert (68707)
Jorge Blanco (52828)
Marlies Dolezal (254225)
Viola Nolte (129939)
Frédérique Peronnet (62582)
Christian Schlötterer (13734)

July 2017

Information related to the three most significant SNPs involved in female abdominal pigmentation var...

Additional file 1: Table S1. of Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants

Reka Nagy (3819652)
Thibaud Boutin (3819655)
Jonathan Marten (3819643)
Jennifer Huffman (174626)
Shona Kerr (350240)
Archie Campbell (669891)
Louise Evenden (3819649)
Jude Gibson (2954124)
Carmen Amador (122097)
David Howard (66812)
Pau Navarro (160568)
Andrew Morris (238622)
Ian Deary (489588)
Lynne Hocking (3819640)
Sandosh Padmanabhan (238533)
Blair Smith (3108897)
Peter Joshi (3819646)
James Wilson (302768)
Nicholas Hastie (190796)
Alan Wright (255176)
Andrew McIntosh (83234)
David Porteous (150029)
Chris Haley (384245)
Veronique Vitart (149854)
Caroline Hayward (149856)

March 2017

Phenotypes and covariates. Table S2. Phenotype heritability. Table S3. Lambdas for all traits, calcu...

Additional file 2: Table S1. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms

Magdalena Lindén (4535917)
Jorge Ramírez Sepúlveda (4535911)
Tojo James (4535923)
Gudny Thorlacius (4535914)
Susanna Brauner (4535920)
David Gómez-Cabrero (4535926)
Tomas Olsson (150960)
Ingrid Kockum (88253)
Marie Wahren-Herlenius (24329)

October 2017

“Number of probes analyzed per SLE/pSS SNP”. List of SLE/pSS SNPs included in the eQTL analysis, wit...

Additional file 1: Figure S1. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms

Magdalena Lindén (4535917)
Jorge Ramírez Sepúlveda (4535911)
Tojo James (4535923)
Gudny Thorlacius (4535914)
Susanna Brauner (4535920)
David Gómez-Cabrero (4535926)
Tomas Olsson (150960)
Ingrid Kockum (88253)
Marie Wahren-Herlenius (24329)

October 2017

“Principal component analysis”. Genotypes for 3736 ancestry informative SNPs were used for a princip...

Additional file 2 of Limited evidence for blood eQTLs in human sexual dimorphism

Völker, Uwe
Teumer, Alexander
Weihs, Antoine
Santoni, Federico A.
Reymond, Alexandre
Franke, Lude
Porcu, Eleonora
Lepik, Kaido
Kutalik, Zoltán
Claringbould, Annique
Richardson, Tom G.
Stem Cell Aging Leukemia and Lymphoma (SALL)
Groningen Institute for Gastro Intestinal Genetics and Immunology (3GI)
University Medicine Greifswald
Swiss Institute of Bioinformatics

January 2022

Additional file 2: Table S1. Sex-specific eQTLs. Table S2. Summary statistics for eQTLs in binding s...

Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms

Magdalena Lindén
Jorge I. Ramírez Sepúlveda
Tojo James
Gudny Ella Thorlacius
Susanna Brauner
David Gómez-Cabrero
Tomas Olsson
Ingrid Kockum
Marie Wahren-Herlenius

October 2017

Abstract Background Systemic lupus erythematosus (SLE) and primary Sjögren’s syndrome (pSS) are auto...

Additional file 1: Table S1. of Predicting gene targets from integrative analyses of summary data from GWAS and eQTL studies for 28 human complex traits

Jennifer Pavlides (3449879)
Zhihong Zhu (227325)
Jacob Gratten (3300798)
Allan McRae (3400103)
Naomi Wray (3449882)
Jian Yang (12136)

August 2016

GWAS information. Table S2. SMR results (P SMR <8.4 × 10–6). Table S3. SMR and HEIDI results (P HEID...

Additional file 1: Table S1. of Discovery of a novel genetic susceptibility locus on X chromosome for systemic lupus erythematosus

Zhengwei Zhu (450391)
Zhuoyuan Liang (3551441)
Herty Liany (518903)
Chao Yang (174810)
Leilei Wen (3551444)
Zhiming Lin (3402026)
Yujun Sheng (410589)
Yan Lin (285018)
Lei Ye (104076)
Yuyan Cheng (3517325)
Yan Chang (486484)
Lu Liu (171341)
Lulu Yang (1728349)
Yinjuan Shi (3551447)
Changbing Shen (568081)
Fusheng Zhou (410588)
Xiaodong Zheng (122836)
Jun Zhu (84054)
Bo Liang (450389)
Yantao Ding (410581)
Yi Zhou (2723)
Xianyong Yin (733332)
Huayang Tang (410579)
Xianbo Zuo (410580)
Liangdan Sun (146882)
Jin-Xin Bei (151461)
Jianjun Liu (28194)
Sen Yang (88300)
Wanling Yang (50598)
Yong Cui (318757)
Xuejun Zhang (68138)

December 2015

Presenting association results for the X chromosome SLE GWAS cohort. (DOC 241 kb

Additional file 1: Table S1. of Disorders of sex development: insights from targeted gene sequencing of a large international patient cohort

Eggers, Stefanie
Sadedin, Simon
van den Bergen, Jocelyn A.
Robevska, Gorjana
Ohnesorg, Thomas
Hewitt, Jacqueline
Lambeth, Luke
Bouty, Aurore
Knarston, Ingrid M.
Tan, Tiong Yang
Cameron, Fergus
Werther, George
Hutson, John
O'Connell, Michele
Grover, Sonia R.
Heloury, Yves
Zacharin, Margaret
Bergman, Philip
Kimber, Chris
Brown, Justin
Webb, Nathalie
Hunter, Matthew F.
Srinivasan, Shubha
Titmuss, Angela
Verge, Charles F.
Mowat, David
Smith, Grahame
Smith, Janine
Ewans, Lisa
Shalhoub, Carolyn
Crock, Patricia
Cowell, Chris
Leong, GaryM.
Ono, Makato
Lafferty, Antony R.
Huynh, Tony
Visser, Uma
Choong, Catherine S.
McKenzie, Fiona
Pachter, Nicholas
Thompson, Elizabeth M.
Couper, Jennifer
Baxendale, Anne
Gecz, Jozef
Wheeler, Benjamin J.
Jefferies, Craig
MacKenzie, Karen
Hofman, Paul
Carter, Philippa
King, Richard I.
Krausz, Csilla
van Ravenswaaij-Arts, Conny M.A.
Looijenga, Leendert
Drop, Sten
Riedl, Stefan
Cools, Martine
Dawson, Angelika
Juniarto, Achmad Zulfa
Khadilkar, Vaman
Khadilkar, Anuradha
Bhatia, Vijayalakshmi
Dũng, Vũ Chí
Atta, Irum
Raza, Jamal
thi Diem Chi, Nguyen
Hao, Tran Kiem
Harley, Vincent
Koopman, Peter
Warne, Garry
Faradz, Sultana
Oshlack, Alicia
Ayers, Katie L.
Sinclair, Andrew H.
University of Groningen
Clinical Cognitive Neuropsychiatry Research Program (CCNP)
Victorian Clinical Genetic Services
Murdoch Childrens Research Institute
University of Melbourne
Monash Children's Hospital
The Royal Children's Hospital Melbourne
Monash Medical Centre
Monash University
Monash Genetics, Monash Health
The Children's Hospital at Westmead
Bioanalytical Mass Spectrometry, University of New South Wales
Sydney Children's Hospital
University of Sydney
Royal Prince Alfred Hospital
John Hunter Children's Hospital
Lady Cilento Children's Hospital
Tokyo Bay Medical Centre, Department of Paediatrics
ANU Medical School
Centenary Hospital for Women and Children
University of Western Australia
Princess Margaret Hospital for Children
King Edward Memorial Hospital
The University of Adelaide
Women's and Children's Hospital Adelaide
Univ. of Adelaide
South Australian Health and Medical Research Institute
University of Otago
Diabetes and Endocrinology, Auckland District Health Board
Christchurch Hospital
The University of Auckland
Starship Paediatric Diabetes and Endocrinology
Canterbury Health Laboratories
University of Florence
Erasmus University Medical Center
University Medical Center Rotterdam
St Anna Children's Hospital
Medical University of Vienna
Ghent University Hospital
University of Manitoba
Genomic Laboratory, Diagnostic Services of Manitoba and Genetics and Metabolism Program, WRHA
Centre for Biomedical Research Faculty of Medicine Diponegoro University (FMDU)
Hirabai Cowasji Jehangir Medical Research Institute
Department of Endocrinology Sanjay Gandhi PGI
Metabolism and Genetics National Children's Hospital
National Institute of Child Health
Hue Central Hospital
Hudson Institute of Medical Research
University of Queensland

January 2016

DSD gene variants. Each variant found in a diagnostic gene (after the filtering and curation process...

Additional file 1: of Genome-wide association study meta-analysis identifies five new loci for systemic lupus erythematosus

Antonio Julià (258036)
Francisco López-Longo (5319911)
José Pérez Venegas (5319926)
Silvia Bonàs-Guarch (5319914)
Àlex Olivé (4113565)
José Andreu (4113532)
Mª. Aguirre-Zamorano (5319920)
Paloma Vela (4113541)
Joan Nolla (4113535)
José de la Fuente (35632)
Antonio Zea (4113526)
José Pego-Reigosa (5319908)
Mercedes Freire (4113562)
Elvira Díez (4113550)
Esther Rodríguez-Almaraz (5319905)
Patricia Carreira (134693)
Ricardo Blanco (118684)
Víctor Taboada (5319923)
María López-Lasanta (4113538)
Mireia Corbeto (5319917)
Josep Mercader (246585)
David Torrents (17960)
Devin Absher (217357)
Sara Marsal (258049)
Antonio Fernández-Nebro (717848)

May 2018

Table S1. Epidemiological features from the Spain GWAS cohort. Figure S1. Principal component analys...

Additional file 1: of Meta-analysis of GWAS on both Chinese and European populations identifies GPR173 as a novel X chromosome susceptibility gene for SLE

Huoru Zhang (5173664)
Yan Zhang (8098)
Yong-Fei Wang (379579)
David Morris (1593706)
Nattiya Hirankarn (215382)
Yujun Sheng (410589)
Jiangshan Shen (4569442)
Hai-Feng Pan (112460)
Jing Yang (13969)
Sen Yang (88300)
Yong Cui (318757)
Dong-Qing Ye (112464)
Timothy Vyse (3539615)
Xuejun Zhang (68138)
Yu Lau (5173667)
Wanling Yang (50598)

May 2018

Table S1. Complete list of ChIP-seq files used in Intragenomic Replicates (IGR) analysis. Table S2. ...

Additional file 7: of Targeted genomic analysis reveals widespread autoimmune disease association with regulatory variants in the TNF superfamily cytokine signalling network

Arianne Richard (3412289)
James Peters (3412283)
James Lee (212552)
Golnaz Vahedi (394496)
Alejandro SchĂ¤ffer (3412292)
Richard Siegel (3412286)
Paul Lyons (18632)
Kenneth Smith (149075)

July 2016

The best-associated SNP is listed for each cis-eQTL (FDR <Â 0.1). Studies that have previously ident...

Additional file 2: of Genome-wide association study meta-analysis identifies five new loci for systemic lupus erythematosus

Antonio Julià (258036)
Francisco López-Longo (5319911)
José Pérez Venegas (5319926)
Silvia Bonàs-Guarch (5319914)
Àlex Olivé (4113565)
José Andreu (4113532)
Mª. Aguirre-Zamorano (5319920)
Paloma Vela (4113541)
Joan Nolla (4113535)
José de la Fuente (35632)
Antonio Zea (4113526)
José Pego-Reigosa (5319908)
Mercedes Freire (4113562)
Elvira Díez (4113550)
Esther Rodríguez-Almaraz (5319905)
Patricia Carreira (134693)
Ricardo Blanco (118684)
Víctor Taboada (5319923)
María López-Lasanta (4113538)
Mireia Corbeto (5319917)
Josep Mercader (246585)
David Torrents (17960)
Devin Absher (217357)
Sara Marsal (258049)
Antonio Fernández-Nebro (717848)

May 2018

Table S3. Association results for the 52 previously known SLE risk loci in the Spain GWAS. Table S4....

Analysis of autosomal genes reveals gene-sex interactions and higher total genetic risk in men with systemic lupus erythematosus

Hughes, Travis
Adler, Adam
Merrill, Joan T.
Kelly, Jennifer A.
Kaufman, Kenneth M.
Williams, Adrienne
Langefeld, Carl D.
Gilkeson, Gary S.
Sanchez, Elena
Martin, Javier
Boackle, Susan A.
Stevens, Anne M.
Alarcón, Graciela S.
Niewold, Timothy B.
Brown, Elizabeth E.
Kimberly, Robert P.
Edberg, Jeffrey C.
Ramsey Goldman, Rosalind
Petri, Michelle
Reveille, John D.
Criswell, Lindsey A.
Vilá, Luis M.
Jacob, Chaim O.
Gaffney, Patrick M.
Moser, Kathy L.
Vyse, Timothy J.
Alarcón Riquelme, Marta E.
James, Judith A.
Tsao, Betty P.
Scofield, R. Hal
Harley, John B.
Richardson, Bruce C.
Sawalha, Amr H.
Frostegård, Johan
Truedsson, Lennart
De Ramón, Enrique
Sabio, José M.
González Escribano, María F.
Ortego Centeno, Norberto
Callejas, José Luis
Sánchez Román, Julio
D'Alfonso, Sandra
Migliarese, Sergio
Sebastiani, Gian Domenico
Witte, Torsten
Lauwerys, Bernard R.
Endreffy, Emoke
Kovács, László
Vasconcelos, Carlos
Da Silva, Berta Martins
GALEAZZI, MAURO

January 2012

Objectives: Systemic lupus erythematosus (SLE) is a sexually dimorphic autoimmune disease which is m...

Additional file 4: Table S3. of Type 1 diabetes susceptibility alleles are associated with distinct alterations in the gut microbiota

Jane Mullaney (4861261)
Juliette Stephens (4861264)
Mary-Ellen Costello (703611)
Cai Fong (4861258)
Brooke Geeling (4861255)
Patrick Gavin (3071853)
Casey Wright (3764194)
Timothy Spector (348486)
Matthew Brown (307585)
Emma Hamilton-Williams (4861252)

February 2018

T1D-associated SNPs used for risk score calculation. Related to Fig.Â 7. (XLSX 49Â kb

Additional file 1: Table S1. of Strong epistatic and additive effects of linked candidate SNPs for Drosophila pigmentation have implications for analysis of genome-wide association studies results

Jean-Michel Gibert (68707)
Jorge Blanco (52828)
Marlies Dolezal (254225)
Viola Nolte (129939)
Frédérique Peronnet (62582)
Christian Schlötterer (13734)

July 2017

Information related to the three most significant SNPs involved in female abdominal pigmentation var...

Additional file 1: Table S1. of Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants

Reka Nagy (3819652)
Thibaud Boutin (3819655)
Jonathan Marten (3819643)
Jennifer Huffman (174626)
Shona Kerr (350240)
Archie Campbell (669891)
Louise Evenden (3819649)
Jude Gibson (2954124)
Carmen Amador (122097)
David Howard (66812)
Pau Navarro (160568)
Andrew Morris (238622)
Ian Deary (489588)
Lynne Hocking (3819640)
Sandosh Padmanabhan (238533)
Blair Smith (3108897)
Peter Joshi (3819646)
James Wilson (302768)
Nicholas Hastie (190796)
Alan Wright (255176)
Andrew McIntosh (83234)
David Porteous (150029)
Chris Haley (384245)
Veronique Vitart (149854)
Caroline Hayward (149856)

March 2017

Phenotypes and covariates. Table S2. Phenotype heritability. Table S3. Lambdas for all traits, calcu...

Additional file 2: Table S1. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms

Magdalena Lindén (4535917)
Jorge Ramírez Sepúlveda (4535911)
Tojo James (4535923)
Gudny Thorlacius (4535914)
Susanna Brauner (4535920)
David Gómez-Cabrero (4535926)
Tomas Olsson (150960)
Ingrid Kockum (88253)
Marie Wahren-Herlenius (24329)

October 2017

“Number of probes analyzed per SLE/pSS SNP”. List of SLE/pSS SNPs included in the eQTL analysis, wit...

Additional file 1: Figure S1. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms

Magdalena Lindén (4535917)
Jorge Ramírez Sepúlveda (4535911)
Tojo James (4535923)
Gudny Thorlacius (4535914)
Susanna Brauner (4535920)
David Gómez-Cabrero (4535926)
Tomas Olsson (150960)
Ingrid Kockum (88253)
Marie Wahren-Herlenius (24329)

October 2017

“Principal component analysis”. Genotypes for 3736 ancestry informative SNPs were used for a princip...

Additional file 2 of Limited evidence for blood eQTLs in human sexual dimorphism

Völker, Uwe
Teumer, Alexander
Weihs, Antoine
Santoni, Federico A.
Reymond, Alexandre
Franke, Lude
Porcu, Eleonora
Lepik, Kaido
Kutalik, Zoltán
Claringbould, Annique
Richardson, Tom G.
Stem Cell Aging Leukemia and Lymphoma (SALL)
Groningen Institute for Gastro Intestinal Genetics and Immunology (3GI)
University Medicine Greifswald
Swiss Institute of Bioinformatics

January 2022

Additional file 2: Table S1. Sex-specific eQTLs. Table S2. Summary statistics for eQTLs in binding s...

Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms

Magdalena Lindén
Jorge I. Ramírez Sepúlveda
Tojo James
Gudny Ella Thorlacius
Susanna Brauner
David Gómez-Cabrero
Tomas Olsson
Ingrid Kockum
Marie Wahren-Herlenius

October 2017

Abstract Background Systemic lupus erythematosus (SLE) and primary Sjögren’s syndrome (pSS) are auto...

Additional file 1: Table S1. of Predicting gene targets from integrative analyses of summary data from GWAS and eQTL studies for 28 human complex traits

Jennifer Pavlides (3449879)
Zhihong Zhu (227325)
Jacob Gratten (3300798)
Allan McRae (3400103)
Naomi Wray (3449882)
Jian Yang (12136)

August 2016

GWAS information. Table S2. SMR results (P SMR <8.4 × 10–6). Table S3. SMR and HEIDI results (P HEID...

Additional file 1: Table S1. of Discovery of a novel genetic susceptibility locus on X chromosome for systemic lupus erythematosus

Zhengwei Zhu (450391)
Zhuoyuan Liang (3551441)
Herty Liany (518903)
Chao Yang (174810)
Leilei Wen (3551444)
Zhiming Lin (3402026)
Yujun Sheng (410589)
Yan Lin (285018)
Lei Ye (104076)
Yuyan Cheng (3517325)
Yan Chang (486484)
Lu Liu (171341)
Lulu Yang (1728349)
Yinjuan Shi (3551447)
Changbing Shen (568081)
Fusheng Zhou (410588)
Xiaodong Zheng (122836)
Jun Zhu (84054)
Bo Liang (450389)
Yantao Ding (410581)
Yi Zhou (2723)
Xianyong Yin (733332)
Huayang Tang (410579)
Xianbo Zuo (410580)
Liangdan Sun (146882)
Jin-Xin Bei (151461)
Jianjun Liu (28194)
Sen Yang (88300)
Wanling Yang (50598)
Yong Cui (318757)
Xuejun Zhang (68138)

December 2015

Presenting association results for the X chromosome SLE GWAS cohort. (DOC 241 kb

Additional file 1: Table S1. of Disorders of sex development: insights from targeted gene sequencing of a large international patient cohort

Eggers, Stefanie
Sadedin, Simon
van den Bergen, Jocelyn A.
Robevska, Gorjana
Ohnesorg, Thomas
Hewitt, Jacqueline
Lambeth, Luke
Bouty, Aurore
Knarston, Ingrid M.
Tan, Tiong Yang
Cameron, Fergus
Werther, George
Hutson, John
O'Connell, Michele
Grover, Sonia R.
Heloury, Yves
Zacharin, Margaret
Bergman, Philip
Kimber, Chris
Brown, Justin
Webb, Nathalie
Hunter, Matthew F.
Srinivasan, Shubha
Titmuss, Angela
Verge, Charles F.
Mowat, David
Smith, Grahame
Smith, Janine
Ewans, Lisa
Shalhoub, Carolyn
Crock, Patricia
Cowell, Chris
Leong, GaryM.
Ono, Makato
Lafferty, Antony R.
Huynh, Tony
Visser, Uma
Choong, Catherine S.
McKenzie, Fiona
Pachter, Nicholas
Thompson, Elizabeth M.
Couper, Jennifer
Baxendale, Anne
Gecz, Jozef
Wheeler, Benjamin J.
Jefferies, Craig
MacKenzie, Karen
Hofman, Paul
Carter, Philippa
King, Richard I.
Krausz, Csilla
van Ravenswaaij-Arts, Conny M.A.
Looijenga, Leendert
Drop, Sten
Riedl, Stefan
Cools, Martine
Dawson, Angelika
Juniarto, Achmad Zulfa
Khadilkar, Vaman
Khadilkar, Anuradha
Bhatia, Vijayalakshmi
Dũng, Vũ Chí
Atta, Irum
Raza, Jamal
thi Diem Chi, Nguyen
Hao, Tran Kiem
Harley, Vincent
Koopman, Peter
Warne, Garry
Faradz, Sultana
Oshlack, Alicia
Ayers, Katie L.
Sinclair, Andrew H.
University of Groningen
Clinical Cognitive Neuropsychiatry Research Program (CCNP)
Victorian Clinical Genetic Services
Murdoch Childrens Research Institute
University of Melbourne
Monash Children's Hospital
The Royal Children's Hospital Melbourne
Monash Medical Centre
Monash University
Monash Genetics, Monash Health
The Children's Hospital at Westmead
Bioanalytical Mass Spectrometry, University of New South Wales
Sydney Children's Hospital
University of Sydney
Royal Prince Alfred Hospital
John Hunter Children's Hospital
Lady Cilento Children's Hospital
Tokyo Bay Medical Centre, Department of Paediatrics
ANU Medical School
Centenary Hospital for Women and Children
University of Western Australia
Princess Margaret Hospital for Children
King Edward Memorial Hospital
The University of Adelaide
Women's and Children's Hospital Adelaide
Univ. of Adelaide
South Australian Health and Medical Research Institute
University of Otago
Diabetes and Endocrinology, Auckland District Health Board
Christchurch Hospital
The University of Auckland
Starship Paediatric Diabetes and Endocrinology
Canterbury Health Laboratories
University of Florence
Erasmus University Medical Center
University Medical Center Rotterdam
St Anna Children's Hospital
Medical University of Vienna
Ghent University Hospital
University of Manitoba
Genomic Laboratory, Diagnostic Services of Manitoba and Genetics and Metabolism Program, WRHA
Centre for Biomedical Research Faculty of Medicine Diponegoro University (FMDU)
Hirabai Cowasji Jehangir Medical Research Institute
Department of Endocrinology Sanjay Gandhi PGI
Metabolism and Genetics National Children's Hospital
National Institute of Child Health
Hue Central Hospital
Hudson Institute of Medical Research
University of Queensland

January 2016

DSD gene variants. Each variant found in a diagnostic gene (after the filtering and curation process...

Additional file 1: of Genome-wide association study meta-analysis identifies five new loci for systemic lupus erythematosus

Antonio Julià (258036)
Francisco López-Longo (5319911)
José Pérez Venegas (5319926)
Silvia Bonàs-Guarch (5319914)
Àlex Olivé (4113565)
José Andreu (4113532)
Mª. Aguirre-Zamorano (5319920)
Paloma Vela (4113541)
Joan Nolla (4113535)
José de la Fuente (35632)
Antonio Zea (4113526)
José Pego-Reigosa (5319908)
Mercedes Freire (4113562)
Elvira Díez (4113550)
Esther Rodríguez-Almaraz (5319905)
Patricia Carreira (134693)
Ricardo Blanco (118684)
Víctor Taboada (5319923)
María López-Lasanta (4113538)
Mireia Corbeto (5319917)
Josep Mercader (246585)
David Torrents (17960)
Devin Absher (217357)
Sara Marsal (258049)
Antonio Fernández-Nebro (717848)

May 2018

Table S1. Epidemiological features from the Spain GWAS cohort. Figure S1. Principal component analys...

Additional file 1: of Meta-analysis of GWAS on both Chinese and European populations identifies GPR173 as a novel X chromosome susceptibility gene for SLE

Huoru Zhang (5173664)
Yan Zhang (8098)
Yong-Fei Wang (379579)
David Morris (1593706)
Nattiya Hirankarn (215382)
Yujun Sheng (410589)
Jiangshan Shen (4569442)
Hai-Feng Pan (112460)
Jing Yang (13969)
Sen Yang (88300)
Yong Cui (318757)
Dong-Qing Ye (112464)
Timothy Vyse (3539615)
Xuejun Zhang (68138)
Yu Lau (5173667)
Wanling Yang (50598)

May 2018

Table S1. Complete list of ChIP-seq files used in Intragenomic Replicates (IGR) analysis. Table S2. ...

Additional file 7: of Targeted genomic analysis reveals widespread autoimmune disease association with regulatory variants in the TNF superfamily cytokine signalling network

Arianne Richard (3412289)
James Peters (3412283)
James Lee (212552)
Golnaz Vahedi (394496)
Alejandro SchĂ¤ffer (3412292)
Richard Siegel (3412286)
Paul Lyons (18632)
Kenneth Smith (149075)

July 2016

The best-associated SNP is listed for each cis-eQTL (FDR <Â 0.1). Studies that have previously ident...

Additional file 2: of Genome-wide association study meta-analysis identifies five new loci for systemic lupus erythematosus

Antonio Julià (258036)
Francisco López-Longo (5319911)
José Pérez Venegas (5319926)
Silvia Bonàs-Guarch (5319914)
Àlex Olivé (4113565)
José Andreu (4113532)
Mª. Aguirre-Zamorano (5319920)
Paloma Vela (4113541)
Joan Nolla (4113535)
José de la Fuente (35632)
Antonio Zea (4113526)
José Pego-Reigosa (5319908)
Mercedes Freire (4113562)
Elvira Díez (4113550)
Esther Rodríguez-Almaraz (5319905)
Patricia Carreira (134693)
Ricardo Blanco (118684)
Víctor Taboada (5319923)
María López-Lasanta (4113538)
Mireia Corbeto (5319917)
Josep Mercader (246585)
David Torrents (17960)
Devin Absher (217357)
Sara Marsal (258049)
Antonio Fernández-Nebro (717848)

May 2018

Table S3. Association results for the 52 previously known SLE risk loci in the Spain GWAS. Table S4....

Analysis of autosomal genes reveals gene-sex interactions and higher total genetic risk in men with systemic lupus erythematosus

Hughes, Travis
Adler, Adam
Merrill, Joan T.
Kelly, Jennifer A.
Kaufman, Kenneth M.
Williams, Adrienne
Langefeld, Carl D.
Gilkeson, Gary S.
Sanchez, Elena
Martin, Javier
Boackle, Susan A.
Stevens, Anne M.
Alarcón, Graciela S.
Niewold, Timothy B.
Brown, Elizabeth E.
Kimberly, Robert P.
Edberg, Jeffrey C.
Ramsey Goldman, Rosalind
Petri, Michelle
Reveille, John D.
Criswell, Lindsey A.
Vilá, Luis M.
Jacob, Chaim O.
Gaffney, Patrick M.
Moser, Kathy L.
Vyse, Timothy J.
Alarcón Riquelme, Marta E.
James, Judith A.
Tsao, Betty P.
Scofield, R. Hal
Harley, John B.
Richardson, Bruce C.
Sawalha, Amr H.
Frostegård, Johan
Truedsson, Lennart
De Ramón, Enrique
Sabio, José M.
González Escribano, María F.
Ortego Centeno, Norberto
Callejas, José Luis
Sánchez Román, Julio
D'Alfonso, Sandra
Migliarese, Sergio
Sebastiani, Gian Domenico
Witte, Torsten
Lauwerys, Bernard R.
Endreffy, Emoke
Kovács, László
Vasconcelos, Carlos
Da Silva, Berta Martins
GALEAZZI, MAURO

January 2012

Objectives: Systemic lupus erythematosus (SLE) is a sexually dimorphic autoimmune disease which is m...

Additional file 4: Table S3. of Type 1 diabetes susceptibility alleles are associated with distinct alterations in the gut microbiota

Jane Mullaney (4861261)
Juliette Stephens (4861264)
Mary-Ellen Costello (703611)
Cai Fong (4861258)
Brooke Geeling (4861255)
Patrick Gavin (3071853)
Casey Wright (3764194)
Timothy Spector (348486)
Matthew Brown (307585)
Emma Hamilton-Williams (4861252)

February 2018

T1D-associated SNPs used for risk score calculation. Related to Fig.Â 7. (XLSX 49Â kb

Additional file 1: Table S1. of Strong epistatic and additive effects of linked candidate SNPs for Drosophila pigmentation have implications for analysis of genome-wide association studies results

Jean-Michel Gibert (68707)
Jorge Blanco (52828)
Marlies Dolezal (254225)
Viola Nolte (129939)
Frédérique Peronnet (62582)
Christian Schlötterer (13734)

July 2017

Information related to the three most significant SNPs involved in female abdominal pigmentation var...

Additional file 1: Table S1. of Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants

Reka Nagy (3819652)
Thibaud Boutin (3819655)
Jonathan Marten (3819643)
Jennifer Huffman (174626)
Shona Kerr (350240)
Archie Campbell (669891)
Louise Evenden (3819649)
Jude Gibson (2954124)
Carmen Amador (122097)
David Howard (66812)
Pau Navarro (160568)
Andrew Morris (238622)
Ian Deary (489588)
Lynne Hocking (3819640)
Sandosh Padmanabhan (238533)
Blair Smith (3108897)
Peter Joshi (3819646)
James Wilson (302768)
Nicholas Hastie (190796)
Alan Wright (255176)
Andrew McIntosh (83234)
David Porteous (150029)
Chris Haley (384245)
Veronique Vitart (149854)
Caroline Hayward (149856)

March 2017

Phenotypes and covariates. Table S2. Phenotype heritability. Table S3. Lambdas for all traits, calcu...

Additional file 7: Table S4. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms

Abstract

Extracted data

Additional file 7: Table S4. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms

Abstract

Extracted data

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