Additional file 6: Figure S4. of Genomic preselection with genotyping-by-sequencing increases performance of commercial oil palm hybrid crosses

Additional file 1 of A pan-genomic approach to genome databases using maize as a model system

Margaret R. Woodhouse (8872739)
Ethalinda K. Cannon (11308558)
John L. Portwood (9549395)
Lisa C. Harper (11308561)
Jack M. Gardiner (9549383)
Mary L. Schaeffer (11308564)
Carson M. Andorf (9549398)

August 2021

Additional file 1: Supplemental Figure 1. SNP data for the NAM founders mapped onto the reference B7...

Development and validation of a high-density SNP genotyping array for African Oil Palm

Kwong, Qi Bin
Teh, Chee Keng
Ong, Ai Ling
Heng, Huey Ying
Lee, Heng Leng
Mohamed, Mohaimi
Low, Joel Zi-Bin
Apparow, Sukganah
Chew, Fook Tim
Mayes, Sean
Kulaveerasingam, Harikrishna
Tammi, Martti
Appleton, David Ross

August 2016

High-density single nucleotide polymorphism (SNP) genotyping arrays are powerful tools that can meas...

Additional file 5: of Construction of a high-density, high-quality genetic map of cultivated lotus (Nelumbo nucifera) using next-generation sequencing

Zhengwei Liu (3452954)
Honglian Zhu (3452957)
Yuping Liu (426572)
Jing Kuang (746928)
Kai Zhou (125548)
Fan Liang (2932437)
Zhenhua Liu (335797)
Depeng Wang (105830)
Weidong Ke (830699)

June 2016

The mapped SNP markersâ name, position, type and their flanking sequences and the bin marker infor...

Additional file 2: Figure S1. of Genomic preselection with genotyping-by-sequencing increases performance of commercial oil palm hybrid crosses

David Cros (562214)
Stéphanie Bocs (10223)
Virginie Riou (2558368)
Enrique Ortega-Abboud (4569304)
Sébastien Tisné (3483758)
Xavier Argout (68581)
Virginie Pomiès (3483773)
Leifi Nodichao (4569301)
Zulkifli Lubis (4569307)
Benoit Cochard (562212)
Tristan Durand-Gasselin (3483770)

November 2017

Pedigree of Group A individuals progeny tested in Site 1 (training set, blue) and progeny tested in ...

Additional file 8: Table S3. of Genomic preselection with genotyping-by-sequencing increases performance of commercial oil palm hybrid crosses

David Cros (562214)
Stéphanie Bocs (10223)
Virginie Riou (2558368)
Enrique Ortega-Abboud (4569304)
Sébastien Tisné (3483758)
Xavier Argout (68581)
Virginie Pomiès (3483773)
Leifi Nodichao (4569301)
Zulkifli Lubis (4569307)
Benoit Cochard (562212)
Tristan Durand-Gasselin (3483770)

November 2017

Variance-covariance matrices between the true (g ′), reference ( g ′ ^ TBLUP $$ {\widehat{\mathbf{g}...

Additional file 4: Table S3. of SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

Gilles Boutet (3472874)
Susete Alves Carvalho (3453005)
Matthieu Falque (76113)
Pierre Peterlongo (3282846)
Emeline Lhuillier (391781)
Olivier Bouchez (104385)
Clément Lavaud (3472877)
Marie-Laure Pilet-Nayel (3472871)
Nathalie Rivière (3472880)
Alain Baranger (3472868)

February 2016

Context sequences, genetic positions on pea linkage groups and genotyping data for eight P. sativum ...

Additional file 5: Table S4. of SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

Gilles Boutet (3472874)
Susete Alves Carvalho (3453005)
Matthieu Falque (76113)
Pierre Peterlongo (3282846)
Emeline Lhuillier (391781)
Olivier Bouchez (104385)
Clément Lavaud (3472877)
Marie-Laure Pilet-Nayel (3472871)
Nathalie Rivière (3472880)
Alain Baranger (3472868)

February 2016

Mapping data and polymorphism in the 48 ‘Baccara’ x ‘PI180693’ RILs of a set of 64,263 SNP markers m...

Additional file 6: Figure S3. of SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

Gilles Boutet (3472874)
Susete Alves Carvalho (3453005)
Matthieu Falque (76113)
Pierre Peterlongo (3282846)
Emeline Lhuillier (391781)
Olivier Bouchez (104385)
Clément Lavaud (3472877)
Marie-Laure Pilet-Nayel (3472871)
Nathalie Rivière (3472880)
Alain Baranger (3472868)

February 2016

Localisation and proportions of non-distorted (P > 0.01) and distorted (P < 0.01) markers along the ...

Developing genome-wide SNPs and constructing an ultrahigh-density linkage map in oil palm

Suwanto, Antonius
Chua, Nam-Hai
Yue, Gen Hua
Bai, Bin
Wang, Le
Zhang, Ying Jun
Lee, May
Rahmadsyah, Rahmadsyah
Alfiko, Yuzer
Ye, Bao Qing
Purwantomo, Sigit

January 2018

Oil palm (Elaeis guineensis Jacq.) is the leading oil-producing crops and the most important edible ...

Detection of ploidy and chromosomal aberrations in commercial oil palm using high-throughput SNP markers

Ngoot-Chin, Ting
Zulkifli, Muhammad Azwan
van de Weg, Eric
Zaki, Noorhariza Mohd
Serdari, Norhalida Mohamed
Mustaffa, Suzana
Zainol Abidin, Mohd Isa
Sanusi, Nik Shazana Nik Mohd
Smulders, Marinus J.M.
Low, Eng Ti Leslie
Ithnin, Maizura
Singh, Rajinder

January 2021

Main conclusion: Karyotyping using high-density genome-wide SNP markers identified various chromosom...

Table_1_Development of High-Density SNP Markers and Their Application in Evaluating Genetic Diversity and Population Structure in Elaeis guineensis.XLSX

Wei Xia (349131)
Tingting Luo (2744662)
Wei Zhang (405)
Annaliese S. Mason (396456)
Dongyi Huang (4852519)
Xiaolong Huang (419430)
Wenqi Tang (4675531)
Yajing Dou (4675528)
Chunyu Zhang (118320)
Yong Xiao (396454)

February 2019

High-density single nucleotide polymorphisms (SNPs) are used as highly favored makers to analyze gen...

Table_2_Development of High-Density SNP Markers and Their Application in Evaluating Genetic Diversity and Population Structure in Elaeis guineensis.XLSX

Wei Xia (349131)
Tingting Luo (2744662)
Wei Zhang (405)
Annaliese S. Mason (396456)
Dongyi Huang (4852519)
Xiaolong Huang (419430)
Wenqi Tang (4675531)
Yajing Dou (4675528)
Chunyu Zhang (118320)
Yong Xiao (396454)

February 2019

High-density single nucleotide polymorphisms (SNPs) are used as highly favored makers to analyze gen...

Additional file 8: of Genome-wide analysis of LTR-retrotransposons in oil palm

Thierry BeulĂŠ (3483767)
MawussĂŠ Agbessi (3483761)
Stephane Dussert (2332948)
Estelle Jaligot (537974)
Romain Guyot (166092)

October 2015

Relationship between the density (sequences per Mb) across chromosomes of predicted coding sequences...

Additional file 1: of Genome-wide nucleotide patterns and potential mechanisms of genome divergence following domestication in maize and soybean

Jinyu Wang (381467)
Xianran Li (6485)
Kyung Kim (31555)
Michael Scanlon (791403)
Scott Jackson (183074)
Nathan Springer (56696)
Jianming Yu (102511)

April 2019

Figure S1. Diagram of SNP filtering process. Figure S2. Frequency of SNP substitution types. Figure ...

Additional file 1: Table S1. of SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

Gilles Boutet (3472874)
Susete Alves Carvalho (3453005)
Matthieu Falque (76113)
Pierre Peterlongo (3282846)
Emeline Lhuillier (391781)
Olivier Bouchez (104385)
Clément Lavaud (3472877)
Marie-Laure Pilet-Nayel (3472871)
Nathalie Rivière (3472880)
Alain Baranger (3472868)

February 2016

Statistics on raw, cleaned and processing of sequencing data across the eight parental lines and 48 ...

Additional file 1 of A pan-genomic approach to genome databases using maize as a model system

Margaret R. Woodhouse (8872739)
Ethalinda K. Cannon (11308558)
John L. Portwood (9549395)
Lisa C. Harper (11308561)
Jack M. Gardiner (9549383)
Mary L. Schaeffer (11308564)
Carson M. Andorf (9549398)

August 2021

Additional file 1: Supplemental Figure 1. SNP data for the NAM founders mapped onto the reference B7...

Development and validation of a high-density SNP genotyping array for African Oil Palm

Kwong, Qi Bin
Teh, Chee Keng
Ong, Ai Ling
Heng, Huey Ying
Lee, Heng Leng
Mohamed, Mohaimi
Low, Joel Zi-Bin
Apparow, Sukganah
Chew, Fook Tim
Mayes, Sean
Kulaveerasingam, Harikrishna
Tammi, Martti
Appleton, David Ross

August 2016

High-density single nucleotide polymorphism (SNP) genotyping arrays are powerful tools that can meas...

Additional file 5: of Construction of a high-density, high-quality genetic map of cultivated lotus (Nelumbo nucifera) using next-generation sequencing

Zhengwei Liu (3452954)
Honglian Zhu (3452957)
Yuping Liu (426572)
Jing Kuang (746928)
Kai Zhou (125548)
Fan Liang (2932437)
Zhenhua Liu (335797)
Depeng Wang (105830)
Weidong Ke (830699)

June 2016

The mapped SNP markersâ name, position, type and their flanking sequences and the bin marker infor...

Additional file 2: Figure S1. of Genomic preselection with genotyping-by-sequencing increases performance of commercial oil palm hybrid crosses

David Cros (562214)
Stéphanie Bocs (10223)
Virginie Riou (2558368)
Enrique Ortega-Abboud (4569304)
Sébastien Tisné (3483758)
Xavier Argout (68581)
Virginie Pomiès (3483773)
Leifi Nodichao (4569301)
Zulkifli Lubis (4569307)
Benoit Cochard (562212)
Tristan Durand-Gasselin (3483770)

November 2017

Pedigree of Group A individuals progeny tested in Site 1 (training set, blue) and progeny tested in ...

Additional file 8: Table S3. of Genomic preselection with genotyping-by-sequencing increases performance of commercial oil palm hybrid crosses

David Cros (562214)
Stéphanie Bocs (10223)
Virginie Riou (2558368)
Enrique Ortega-Abboud (4569304)
Sébastien Tisné (3483758)
Xavier Argout (68581)
Virginie Pomiès (3483773)
Leifi Nodichao (4569301)
Zulkifli Lubis (4569307)
Benoit Cochard (562212)
Tristan Durand-Gasselin (3483770)

November 2017

Variance-covariance matrices between the true (g ′), reference ( g ′ ^ TBLUP $$ {\widehat{\mathbf{g}...

Additional file 4: Table S3. of SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

Gilles Boutet (3472874)
Susete Alves Carvalho (3453005)
Matthieu Falque (76113)
Pierre Peterlongo (3282846)
Emeline Lhuillier (391781)
Olivier Bouchez (104385)
Clément Lavaud (3472877)
Marie-Laure Pilet-Nayel (3472871)
Nathalie Rivière (3472880)
Alain Baranger (3472868)

February 2016

Context sequences, genetic positions on pea linkage groups and genotyping data for eight P. sativum ...

Additional file 5: Table S4. of SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

Gilles Boutet (3472874)
Susete Alves Carvalho (3453005)
Matthieu Falque (76113)
Pierre Peterlongo (3282846)
Emeline Lhuillier (391781)
Olivier Bouchez (104385)
Clément Lavaud (3472877)
Marie-Laure Pilet-Nayel (3472871)
Nathalie Rivière (3472880)
Alain Baranger (3472868)

February 2016

Mapping data and polymorphism in the 48 ‘Baccara’ x ‘PI180693’ RILs of a set of 64,263 SNP markers m...

Additional file 6: Figure S3. of SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

Gilles Boutet (3472874)
Susete Alves Carvalho (3453005)
Matthieu Falque (76113)
Pierre Peterlongo (3282846)
Emeline Lhuillier (391781)
Olivier Bouchez (104385)
Clément Lavaud (3472877)
Marie-Laure Pilet-Nayel (3472871)
Nathalie Rivière (3472880)
Alain Baranger (3472868)

February 2016

Localisation and proportions of non-distorted (P > 0.01) and distorted (P < 0.01) markers along the ...

Developing genome-wide SNPs and constructing an ultrahigh-density linkage map in oil palm

Suwanto, Antonius
Chua, Nam-Hai
Yue, Gen Hua
Bai, Bin
Wang, Le
Zhang, Ying Jun
Lee, May
Rahmadsyah, Rahmadsyah
Alfiko, Yuzer
Ye, Bao Qing
Purwantomo, Sigit

January 2018

Oil palm (Elaeis guineensis Jacq.) is the leading oil-producing crops and the most important edible ...

Detection of ploidy and chromosomal aberrations in commercial oil palm using high-throughput SNP markers

Ngoot-Chin, Ting
Zulkifli, Muhammad Azwan
van de Weg, Eric
Zaki, Noorhariza Mohd
Serdari, Norhalida Mohamed
Mustaffa, Suzana
Zainol Abidin, Mohd Isa
Sanusi, Nik Shazana Nik Mohd
Smulders, Marinus J.M.
Low, Eng Ti Leslie
Ithnin, Maizura
Singh, Rajinder

January 2021

Main conclusion: Karyotyping using high-density genome-wide SNP markers identified various chromosom...

Table_1_Development of High-Density SNP Markers and Their Application in Evaluating Genetic Diversity and Population Structure in Elaeis guineensis.XLSX

Wei Xia (349131)
Tingting Luo (2744662)
Wei Zhang (405)
Annaliese S. Mason (396456)
Dongyi Huang (4852519)
Xiaolong Huang (419430)
Wenqi Tang (4675531)
Yajing Dou (4675528)
Chunyu Zhang (118320)
Yong Xiao (396454)

February 2019

High-density single nucleotide polymorphisms (SNPs) are used as highly favored makers to analyze gen...

Table_2_Development of High-Density SNP Markers and Their Application in Evaluating Genetic Diversity and Population Structure in Elaeis guineensis.XLSX

Wei Xia (349131)
Tingting Luo (2744662)
Wei Zhang (405)
Annaliese S. Mason (396456)
Dongyi Huang (4852519)
Xiaolong Huang (419430)
Wenqi Tang (4675531)
Yajing Dou (4675528)
Chunyu Zhang (118320)
Yong Xiao (396454)

February 2019

High-density single nucleotide polymorphisms (SNPs) are used as highly favored makers to analyze gen...

Additional file 8: of Genome-wide analysis of LTR-retrotransposons in oil palm

Thierry BeulĂŠ (3483767)
MawussĂŠ Agbessi (3483761)
Stephane Dussert (2332948)
Estelle Jaligot (537974)
Romain Guyot (166092)

October 2015

Relationship between the density (sequences per Mb) across chromosomes of predicted coding sequences...

Additional file 1: of Genome-wide nucleotide patterns and potential mechanisms of genome divergence following domestication in maize and soybean

Jinyu Wang (381467)
Xianran Li (6485)
Kyung Kim (31555)
Michael Scanlon (791403)
Scott Jackson (183074)
Nathan Springer (56696)
Jianming Yu (102511)

April 2019

Figure S1. Diagram of SNP filtering process. Figure S2. Frequency of SNP substitution types. Figure ...

Additional file 1: Table S1. of SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

Gilles Boutet (3472874)
Susete Alves Carvalho (3453005)
Matthieu Falque (76113)
Pierre Peterlongo (3282846)
Emeline Lhuillier (391781)
Olivier Bouchez (104385)
Clément Lavaud (3472877)
Marie-Laure Pilet-Nayel (3472871)
Nathalie Rivière (3472880)
Alain Baranger (3472868)

February 2016

Statistics on raw, cleaned and processing of sequencing data across the eight parental lines and 48 ...

Additional file 1 of A pan-genomic approach to genome databases using maize as a model system

Margaret R. Woodhouse (8872739)
Ethalinda K. Cannon (11308558)
John L. Portwood (9549395)
Lisa C. Harper (11308561)
Jack M. Gardiner (9549383)
Mary L. Schaeffer (11308564)
Carson M. Andorf (9549398)

August 2021

Additional file 1: Supplemental Figure 1. SNP data for the NAM founders mapped onto the reference B7...

Development and validation of a high-density SNP genotyping array for African Oil Palm

Kwong, Qi Bin
Teh, Chee Keng
Ong, Ai Ling
Heng, Huey Ying
Lee, Heng Leng
Mohamed, Mohaimi
Low, Joel Zi-Bin
Apparow, Sukganah
Chew, Fook Tim
Mayes, Sean
Kulaveerasingam, Harikrishna
Tammi, Martti
Appleton, David Ross

August 2016

High-density single nucleotide polymorphism (SNP) genotyping arrays are powerful tools that can meas...

Additional file 5: of Construction of a high-density, high-quality genetic map of cultivated lotus (Nelumbo nucifera) using next-generation sequencing

Zhengwei Liu (3452954)
Honglian Zhu (3452957)
Yuping Liu (426572)
Jing Kuang (746928)
Kai Zhou (125548)
Fan Liang (2932437)
Zhenhua Liu (335797)
Depeng Wang (105830)
Weidong Ke (830699)

June 2016

The mapped SNP markersâ name, position, type and their flanking sequences and the bin marker infor...

Additional file 6: Figure S4. of Genomic preselection with genotyping-by-sequencing increases performance of commercial oil palm hybrid crosses

Abstract

Extracted data

Additional file 6: Figure S4. of Genomic preselection with genotyping-by-sequencing increases performance of commercial oil palm hybrid crosses

Abstract

Extracted data

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