Heat map of relative synonymous codon usage (RSCU) for start, middle, and end 30 CDS (coding sequence) codons ending in pyrimidine (C and T) from different soybean gene groups.
- Thiago J. Nakayama (4598410)
- Fabiana A. Rodrigues (4598389)
- Norman Neumaier (410625)
- Juliana Marcolino-Gomes (410621)
- Hugo B. C. Molinari (4598392)
- Thaís R. Santiago (4598401)
- Eduardo F. Formighieri (4598404)
- Marcos F. Basso (4598419)
- José R. B. Farias (4598416)
- Beatriz M. Emygdio (4598407)
- Ana C. B. de Oliveira (4598395)
- Ângela D. Campos (4598386)
- Aluízio Borém (217519)
- Frank G. Harmon (514829)
- Liliane M. Mertz-Henning (4598398)
- Alexandre L. Nepomuceno (4598413)
Publication date
November 2017
DOIAbstract
<p>The groups are formed by top 40 and 500 ranked up- (U), down-regulated (D), and stable-genes (S) to hypoxia, and genome (G). Asp, Cys, Tyr, His, Phe, and Asn are coding by 2-fold degenerate pyrimidine ending codons. Heat map of RSCU for all 59 synonymous codons including for whole CDS extension is provided in Fig E in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0187920#pone.0187920.s001" target="_blank">S1 Supporting Information</a>.</p
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