Additional file 1: of Early nutritional programming affects liver transcriptome in diploid and triploid Atlantic salmon, Salmo salar

Additional file 5: of Transcriptional development of phospholipid and lipoprotein metabolism in different intestinal regions of Atlantic salmon (Salmo salar) fry

Yang Jin (78609)
Rolf Olsen (60885)
Mari-Ann Østensen (5106740)
Gareth Gillard (3479963)
Sven Korsvoll (5106737)
Nina Santi (275627)
Arne Gjuvsland (217265)
Jon Vik (4177057)
Jacob Torgersen (277195)
Simen Sandve (3556055)
Yngvar Olsen (5106743)

April 2018

Table S1. Result of KEGG ontology enrichment analysis on differential expressed genes (DEG) in stoma...

Additional file 7: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil

Albert Caballero-Solares (4424959)
Xi Xue (3489176)
Christopher Parrish (161575)
Maryam Foroutani (5926820)
Richard Taylor (34490)
Matthew Rise (3489173)

November 2018

Figure S5. Alignment of nucleotide sequences corresponding to htra1a and htra1b. Conserved nucleotid...

Additional file 7: of Transcriptional development of phospholipid and lipoprotein metabolism in different intestinal regions of Atlantic salmon (Salmo salar) fry

Yang Jin (78609)
Rolf Olsen (60885)
Mari-Ann Østensen (5106740)
Gareth Gillard (3479963)
Sven Korsvoll (5106737)
Nina Santi (275627)
Arne Gjuvsland (217265)
Jon Vik (4177057)
Jacob Torgersen (277195)
Simen Sandve (3556055)
Yngvar Olsen (5106743)

April 2018

Table S1. Log2 fold change (LogFC) and adjusted p value (q) of all gene duplicates in phospholipid a...

Additional file 5: of Early nutritional programming affects liver transcriptome in diploid and triploid Atlantic salmon, Salmo salar

L. Vera (4601566)
C. Metochis (4601575)
J. Taylor (4601572)
M. Clarkson (4601563)
K. SkjĂŚrven (4601569)
H. Migaud (4111705)
D. Tocher (4601560)

November 2017

List of genes differentially expressed according to two-way ANOVA (pÂ <Â 0.05) and affected by the i...

Additional file 6: of Early nutritional programming affects liver transcriptome in diploid and triploid Atlantic salmon, Salmo salar

L. Vera (4601566)
C. Metochis (4601575)
J. Taylor (4601572)
M. Clarkson (4601563)
K. SkjĂŚrven (4601569)
H. Migaud (4111705)
D. Tocher (4601560)

November 2017

Pathways significantly enriched based on diet x ploidy, as indicated by two-way ANOVA (pÂ <Â 0.05). ...

Additional file 2: of Effect of triploidy on liver gene expression in coho salmon (Oncorhynchus kisutch) under different metabolic states

Kris Christensen (6664883)
Dionne Sakhrani (809148)
Eric Rondeau (179438)
Jeffery Richards (6664886)
Ben Koop (3260670)
Robert Devlin (3254766)

May 2019

Supporting Information. This is a spreadsheet file with information on RNA-seq alignments, significa...

Additional file 2: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil

Albert Caballero-Solares (4424959)
Xi Xue (3489176)
Christopher Parrish (161575)
Maryam Foroutani (5926820)
Richard Taylor (34490)
Matthew Rise (3489173)

November 2018

Table S2. Complete list of microarray probes identified as diet-responsive. The results from the gen...

Additional file 6: of Molecular pathways associated with the nutritional programming of plant-based diet acceptance in rainbow trout following an early feeding exposure

Mukundh Balasubramanian (3564614)
Stephane Panserat (3564623)
Mathilde Dupont-Nivet (143686)
Edwige Quillet (22709)
Jerome Montfort (3564617)
Aurelie Le Cam (3497714)
Francoise Medale (3564620)
Sadasivam Kaushik (421073)
Inge Geurden (326970)

June 2016

List of probes in pathways significantly enriched based on early nutritional history in the liver. T...

Additional file 5: of Differential responses of the gut transcriptome to plant protein diets in farmed Atlantic salmon

ElĹźbieta KrĂłl (3510539)
Alex Douglas (527078)
Douglas Tocher (3510464)
Viv Crampton (3510467)
John Speakman (3271935)
Christopher Secombes (3510461)
Samuel Martin (2852174)

February 2016

Venn diagrams showing the numbers of common and unique features altered in distal gut of Atlantic sa...

Additional file 10: of Differential responses of the gut transcriptome to plant protein diets in farmed Atlantic salmon

ElĹźbieta KrĂłl (3510539)
Alex Douglas (527078)
Douglas Tocher (3510464)
Viv Crampton (3510467)
John Speakman (3271935)
Christopher Secombes (3510461)
Samuel Martin (2852174)

February 2016

List of genes associated with biological functions predicted by IPA downstream effects analysis to i...

Early nutritional programming affects liver transcriptome in diploid and triploid Atlantic salmon, Salmo salar

Vera, L. M.
Metochis, C.
Taylor, J. F.
Clarkson, M.
Skjærven, K. H.
Migaud, H.
Tocher, D. R.

November 2017

Background: To ensure sustainability of aquaculture, plant-based ingredients are being used in feeds...

Additional file 7: of Molecular pathways associated with the nutritional programming of plant-based diet acceptance in rainbow trout following an early feeding exposure

Mukundh Balasubramanian (3564614)
Stephane Panserat (3564623)
Mathilde Dupont-Nivet (143686)
Edwige Quillet (22709)
Jerome Montfort (3564617)
Aurelie Le Cam (3497714)
Francoise Medale (3564620)
Sadasivam Kaushik (421073)
Inge Geurden (326970)

June 2016

Confirmation by real-time RT-PCR of selected genes differentially expressed in trout swim-up fry (a)...

Additional file 2: of Transcriptional development of phospholipid and lipoprotein metabolism in different intestinal regions of Atlantic salmon (Salmo salar) fry

Yang Jin (78609)
Rolf Olsen (60885)
Mari-Ann Østensen (5106740)
Gareth Gillard (3479963)
Sven Korsvoll (5106737)
Nina Santi (275627)
Arne Gjuvsland (217265)
Jon Vik (4177057)
Jacob Torgersen (277195)
Simen Sandve (3556055)
Yngvar Olsen (5106743)

April 2018

Table S1. List of Atlantic salmon (Ssa) genes involved in phospholipid (PL) de-novo synthesis, lyso-...

Additional file 9: of Effect of triploidy on liver gene expression in coho salmon (Oncorhynchus kisutch) under different metabolic states

Kris Christensen (6664883)
Dionne Sakhrani (809148)
Eric Rondeau (179438)
Jeffery Richards (6664886)
Ben Koop (3260670)
Robert Devlin (3254766)

May 2019

Figure S7. Transgenic Growth Hormone Gene Expression and Growth from Previous Study. A) Figure repro...

Additional file 4: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil

Albert Caballero-Solares (4424959)
Xi Xue (3489176)
Christopher Parrish (161575)
Maryam Foroutani (5926820)
Richard Taylor (34490)
Matthew Rise (3489173)

November 2018

Figure S2. Alignment of nucleotide sequences corresponding to dgat2a and dgat2b. Nucleotides conserv...

Additional file 5: of Transcriptional development of phospholipid and lipoprotein metabolism in different intestinal regions of Atlantic salmon (Salmo salar) fry

Yang Jin (78609)
Rolf Olsen (60885)
Mari-Ann Østensen (5106740)
Gareth Gillard (3479963)
Sven Korsvoll (5106737)
Nina Santi (275627)
Arne Gjuvsland (217265)
Jon Vik (4177057)
Jacob Torgersen (277195)
Simen Sandve (3556055)
Yngvar Olsen (5106743)

April 2018

Table S1. Result of KEGG ontology enrichment analysis on differential expressed genes (DEG) in stoma...

Additional file 7: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil

Albert Caballero-Solares (4424959)
Xi Xue (3489176)
Christopher Parrish (161575)
Maryam Foroutani (5926820)
Richard Taylor (34490)
Matthew Rise (3489173)

November 2018

Figure S5. Alignment of nucleotide sequences corresponding to htra1a and htra1b. Conserved nucleotid...

Additional file 7: of Transcriptional development of phospholipid and lipoprotein metabolism in different intestinal regions of Atlantic salmon (Salmo salar) fry

Yang Jin (78609)
Rolf Olsen (60885)
Mari-Ann Østensen (5106740)
Gareth Gillard (3479963)
Sven Korsvoll (5106737)
Nina Santi (275627)
Arne Gjuvsland (217265)
Jon Vik (4177057)
Jacob Torgersen (277195)
Simen Sandve (3556055)
Yngvar Olsen (5106743)

April 2018

Table S1. Log2 fold change (LogFC) and adjusted p value (q) of all gene duplicates in phospholipid a...

Additional file 5: of Early nutritional programming affects liver transcriptome in diploid and triploid Atlantic salmon, Salmo salar

L. Vera (4601566)
C. Metochis (4601575)
J. Taylor (4601572)
M. Clarkson (4601563)
K. SkjĂŚrven (4601569)
H. Migaud (4111705)
D. Tocher (4601560)

November 2017

List of genes differentially expressed according to two-way ANOVA (pÂ <Â 0.05) and affected by the i...

Additional file 6: of Early nutritional programming affects liver transcriptome in diploid and triploid Atlantic salmon, Salmo salar

L. Vera (4601566)
C. Metochis (4601575)
J. Taylor (4601572)
M. Clarkson (4601563)
K. SkjĂŚrven (4601569)
H. Migaud (4111705)
D. Tocher (4601560)

November 2017

Pathways significantly enriched based on diet x ploidy, as indicated by two-way ANOVA (pÂ <Â 0.05). ...

Additional file 2: of Effect of triploidy on liver gene expression in coho salmon (Oncorhynchus kisutch) under different metabolic states

Kris Christensen (6664883)
Dionne Sakhrani (809148)
Eric Rondeau (179438)
Jeffery Richards (6664886)
Ben Koop (3260670)
Robert Devlin (3254766)

May 2019

Supporting Information. This is a spreadsheet file with information on RNA-seq alignments, significa...

Additional file 2: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil

Albert Caballero-Solares (4424959)
Xi Xue (3489176)
Christopher Parrish (161575)
Maryam Foroutani (5926820)
Richard Taylor (34490)
Matthew Rise (3489173)

November 2018

Table S2. Complete list of microarray probes identified as diet-responsive. The results from the gen...

Additional file 6: of Molecular pathways associated with the nutritional programming of plant-based diet acceptance in rainbow trout following an early feeding exposure

Mukundh Balasubramanian (3564614)
Stephane Panserat (3564623)
Mathilde Dupont-Nivet (143686)
Edwige Quillet (22709)
Jerome Montfort (3564617)
Aurelie Le Cam (3497714)
Francoise Medale (3564620)
Sadasivam Kaushik (421073)
Inge Geurden (326970)

June 2016

List of probes in pathways significantly enriched based on early nutritional history in the liver. T...

Additional file 5: of Differential responses of the gut transcriptome to plant protein diets in farmed Atlantic salmon

ElĹźbieta KrĂłl (3510539)
Alex Douglas (527078)
Douglas Tocher (3510464)
Viv Crampton (3510467)
John Speakman (3271935)
Christopher Secombes (3510461)
Samuel Martin (2852174)

February 2016

Venn diagrams showing the numbers of common and unique features altered in distal gut of Atlantic sa...

Additional file 10: of Differential responses of the gut transcriptome to plant protein diets in farmed Atlantic salmon

ElĹźbieta KrĂłl (3510539)
Alex Douglas (527078)
Douglas Tocher (3510464)
Viv Crampton (3510467)
John Speakman (3271935)
Christopher Secombes (3510461)
Samuel Martin (2852174)

February 2016

List of genes associated with biological functions predicted by IPA downstream effects analysis to i...

Early nutritional programming affects liver transcriptome in diploid and triploid Atlantic salmon, Salmo salar

Vera, L. M.
Metochis, C.
Taylor, J. F.
Clarkson, M.
Skjærven, K. H.
Migaud, H.
Tocher, D. R.

November 2017

Background: To ensure sustainability of aquaculture, plant-based ingredients are being used in feeds...

Additional file 7: of Molecular pathways associated with the nutritional programming of plant-based diet acceptance in rainbow trout following an early feeding exposure

Mukundh Balasubramanian (3564614)
Stephane Panserat (3564623)
Mathilde Dupont-Nivet (143686)
Edwige Quillet (22709)
Jerome Montfort (3564617)
Aurelie Le Cam (3497714)
Francoise Medale (3564620)
Sadasivam Kaushik (421073)
Inge Geurden (326970)

June 2016

Confirmation by real-time RT-PCR of selected genes differentially expressed in trout swim-up fry (a)...

Additional file 2: of Transcriptional development of phospholipid and lipoprotein metabolism in different intestinal regions of Atlantic salmon (Salmo salar) fry

Yang Jin (78609)
Rolf Olsen (60885)
Mari-Ann Østensen (5106740)
Gareth Gillard (3479963)
Sven Korsvoll (5106737)
Nina Santi (275627)
Arne Gjuvsland (217265)
Jon Vik (4177057)
Jacob Torgersen (277195)
Simen Sandve (3556055)
Yngvar Olsen (5106743)

April 2018

Table S1. List of Atlantic salmon (Ssa) genes involved in phospholipid (PL) de-novo synthesis, lyso-...

Additional file 9: of Effect of triploidy on liver gene expression in coho salmon (Oncorhynchus kisutch) under different metabolic states

Kris Christensen (6664883)
Dionne Sakhrani (809148)
Eric Rondeau (179438)
Jeffery Richards (6664886)
Ben Koop (3260670)
Robert Devlin (3254766)

May 2019

Figure S7. Transgenic Growth Hormone Gene Expression and Growth from Previous Study. A) Figure repro...

Additional file 4: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil

Albert Caballero-Solares (4424959)
Xi Xue (3489176)
Christopher Parrish (161575)
Maryam Foroutani (5926820)
Richard Taylor (34490)
Matthew Rise (3489173)

November 2018

Figure S2. Alignment of nucleotide sequences corresponding to dgat2a and dgat2b. Nucleotides conserv...

Additional file 5: of Transcriptional development of phospholipid and lipoprotein metabolism in different intestinal regions of Atlantic salmon (Salmo salar) fry

Yang Jin (78609)
Rolf Olsen (60885)
Mari-Ann Østensen (5106740)
Gareth Gillard (3479963)
Sven Korsvoll (5106737)
Nina Santi (275627)
Arne Gjuvsland (217265)
Jon Vik (4177057)
Jacob Torgersen (277195)
Simen Sandve (3556055)
Yngvar Olsen (5106743)

April 2018

Table S1. Result of KEGG ontology enrichment analysis on differential expressed genes (DEG) in stoma...

Additional file 7: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil

Albert Caballero-Solares (4424959)
Xi Xue (3489176)
Christopher Parrish (161575)
Maryam Foroutani (5926820)
Richard Taylor (34490)
Matthew Rise (3489173)

November 2018

Figure S5. Alignment of nucleotide sequences corresponding to htra1a and htra1b. Conserved nucleotid...

Additional file 7: of Transcriptional development of phospholipid and lipoprotein metabolism in different intestinal regions of Atlantic salmon (Salmo salar) fry

Yang Jin (78609)
Rolf Olsen (60885)
Mari-Ann Østensen (5106740)
Gareth Gillard (3479963)
Sven Korsvoll (5106737)
Nina Santi (275627)
Arne Gjuvsland (217265)
Jon Vik (4177057)
Jacob Torgersen (277195)
Simen Sandve (3556055)
Yngvar Olsen (5106743)

April 2018

Table S1. Log2 fold change (LogFC) and adjusted p value (q) of all gene duplicates in phospholipid a...

Additional file 1: of Early nutritional programming affects liver transcriptome in diploid and triploid Atlantic salmon, Salmo salar

Abstract

Extracted data

Additional file 1: of Early nutritional programming affects liver transcriptome in diploid and triploid Atlantic salmon, Salmo salar

Abstract

Extracted data

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