MOESM10 of Transcriptomic profiling and genetic analyses reveal novel key regulators of cellulase and xylanase gene expression in Penicillium oxalicum

MOESM7 of Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression

Shuai Zhao (803827)
Qi Liu (33068)
Jiu-Xiang Wang (6652502)
Xu-Zhong Liao (6652508)
Hao Guo (346528)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Lu-Sheng Liao (3499220)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

April 2019

Additional file 7: Figure S3. Growth curve of P. oxalicum mutants ÎPoxMBF1 and ÎPoxKu70 in glucose...

MOESM4 of Production of a high-efficiency cellulase complex via β-glucosidase engineering in Penicillium oxalicum

Guangshan Yao (794307)
Ruimei Wu (794308)
Qinbiao Kan (794310)
Liwei Gao (794309)
Meng Liu (261774)
Piao Yang (794311)
Jian Du (360004)
Zhonghai Li (460152)
Yinbo Qu (122920)

March 2016

Additional file 4: Figure S4. qPCR analysis of the transcription change of cbh1and eg1 The transcrip...

MOESM2 of Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression

Shuai Zhao (803827)
Qi Liu (33068)
Jiu-Xiang Wang (6652502)
Xu-Zhong Liao (6652508)
Hao Guo (346528)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Lu-Sheng Liao (3499220)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

April 2019

Additional file 2: Table S2. DEGs identified in P. oxalicum strain HP7-1 grown in solid medium conta...

MOESM11 of Transcriptomic profiling and genetic analyses reveal novel key regulators of cellulase and xylanase gene expression in Penicillium oxalicum

Yu-Si Yan (3499211)
Shuai Zhao (803827)
Lu-Sheng Liao (3499220)
Qi-Peng He (3499217)
Ya-Ru Xiong (3499229)
Long Wang (95893)
Cheng-Xi Li (3499205)
Jia-Xun Feng (41405)

November 2017

Additional file 11: Figure S7. Electrophoretic mobility shift assay showing the interaction between ...

MOESM4 of Transcriptomic profiling and genetic analyses reveal novel key regulators of cellulase and xylanase gene expression in Penicillium oxalicum

Yu-Si Yan (3499211)
Shuai Zhao (803827)
Lu-Sheng Liao (3499220)
Qi-Peng He (3499217)
Ya-Ru Xiong (3499229)
Long Wang (95893)
Cheng-Xi Li (3499205)
Jia-Xun Feng (41405)

November 2017

Additional file 4: Table S2. List of 108 genes differentially coexpressed on all carbon sources test...

MOESM5 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 5: Figure S3. Functional annotation of secreted proteins as determined using the Kyo...

Transcriptomic profiling and genetic analyses reveal novel key regulators of cellulase and xylanase gene expression in Penicillium oxalicum

Yu-Si Yan
Shuai Zhao
Lu-Sheng Liao
Qi-Peng He
Ya-Ru Xiong
Long Wang
Cheng-Xi Li
Jia-Xun Feng

November 2017

Abstract Background The transition to a more environmentally friendly economy has prompted studies o...

MOESM2 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 2: Table S1. List of 274 single nucleotide variations and 12 Insertion/deletions (In...

MOESM10 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 10: Figure S6. Activities of crude enzymes from PoxClrB, POX02484, and POX08522 dele...

MOESM8 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 8: Figure S4. Phenotypic comparison of wild-type P. oxalicum strain HP7-1 and the ΔP...

MOESM1 of How an essential Zn2Cys6 transcription factor PoxCxrA regulates cellulase gene expression in ascomycete fungi?

Lu-Sheng Liao (3499220)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Yu-Si Yan (3499211)
Xue-Mei Luo (5830109)
Shuai Zhao (803827)
Jia-Xun Feng (41405)

May 2019

Additional file 1: Table S1. Summary of transcriptomic data generated from Penicillium oxalicum

MOESM2 of How an essential Zn2Cys6 transcription factor PoxCxrA regulates cellulase gene expression in ascomycete fungi?

Lu-Sheng Liao (3499220)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Yu-Si Yan (3499211)
Xue-Mei Luo (5830109)
Shuai Zhao (803827)
Jia-Xun Feng (41405)

May 2019

Additional file 2: Figure S1. Pearson’s correlation analysis of transcriptomes from Penicillium oxal...

MOESM2 of Combining manipulation of transcription factors and overexpression of the target genes to enhance lignocellulolytic enzyme production in Penicillium oxalicum

Liwei Gao (794309)
Zhonghai Li (460152)
Chengqiang Xia (3938972)
Yinbo Qu (122920)
Meng Liu (261774)
Piao Yang (794311)
Lele Yu (3938969)
Xin Song (465237)

April 2017

Additional file 2. Fig. S2 Activity analysis of lignocellulolytic enzymes by zymography. (A-C) Xylan...

MOESM1 of Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression

Shuai Zhao (803827)
Qi Liu (33068)
Jiu-Xiang Wang (6652502)
Xu-Zhong Liao (6652508)
Hao Guo (346528)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Lu-Sheng Liao (3499220)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

April 2019

Additional file 1: Table S1. Summary of RNA-sequencing data generated from P. oxalicum strain HP7-1

MOESM5 of Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression

Shuai Zhao (803827)
Qi Liu (33068)
Jiu-Xiang Wang (6652502)
Xu-Zhong Liao (6652508)
Hao Guo (346528)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Lu-Sheng Liao (3499220)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

April 2019

Additional file 5: Table S4. Candidate regulatory genes knocked out in P. oxalicum

MOESM7 of Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression

Shuai Zhao (803827)
Qi Liu (33068)
Jiu-Xiang Wang (6652502)
Xu-Zhong Liao (6652508)
Hao Guo (346528)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Lu-Sheng Liao (3499220)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

April 2019

Additional file 7: Figure S3. Growth curve of P. oxalicum mutants ÎPoxMBF1 and ÎPoxKu70 in glucose...

MOESM4 of Production of a high-efficiency cellulase complex via β-glucosidase engineering in Penicillium oxalicum

Guangshan Yao (794307)
Ruimei Wu (794308)
Qinbiao Kan (794310)
Liwei Gao (794309)
Meng Liu (261774)
Piao Yang (794311)
Jian Du (360004)
Zhonghai Li (460152)
Yinbo Qu (122920)

March 2016

Additional file 4: Figure S4. qPCR analysis of the transcription change of cbh1and eg1 The transcrip...

MOESM2 of Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression

Shuai Zhao (803827)
Qi Liu (33068)
Jiu-Xiang Wang (6652502)
Xu-Zhong Liao (6652508)
Hao Guo (346528)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Lu-Sheng Liao (3499220)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

April 2019

Additional file 2: Table S2. DEGs identified in P. oxalicum strain HP7-1 grown in solid medium conta...

MOESM11 of Transcriptomic profiling and genetic analyses reveal novel key regulators of cellulase and xylanase gene expression in Penicillium oxalicum

Yu-Si Yan (3499211)
Shuai Zhao (803827)
Lu-Sheng Liao (3499220)
Qi-Peng He (3499217)
Ya-Ru Xiong (3499229)
Long Wang (95893)
Cheng-Xi Li (3499205)
Jia-Xun Feng (41405)

November 2017

Additional file 11: Figure S7. Electrophoretic mobility shift assay showing the interaction between ...

MOESM4 of Transcriptomic profiling and genetic analyses reveal novel key regulators of cellulase and xylanase gene expression in Penicillium oxalicum

Yu-Si Yan (3499211)
Shuai Zhao (803827)
Lu-Sheng Liao (3499220)
Qi-Peng He (3499217)
Ya-Ru Xiong (3499229)
Long Wang (95893)
Cheng-Xi Li (3499205)
Jia-Xun Feng (41405)

November 2017

Additional file 4: Table S2. List of 108 genes differentially coexpressed on all carbon sources test...

MOESM5 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 5: Figure S3. Functional annotation of secreted proteins as determined using the Kyo...

Transcriptomic profiling and genetic analyses reveal novel key regulators of cellulase and xylanase gene expression in Penicillium oxalicum

Yu-Si Yan
Shuai Zhao
Lu-Sheng Liao
Qi-Peng He
Ya-Ru Xiong
Long Wang
Cheng-Xi Li
Jia-Xun Feng

November 2017

Abstract Background The transition to a more environmentally friendly economy has prompted studies o...

MOESM2 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 2: Table S1. List of 274 single nucleotide variations and 12 Insertion/deletions (In...

MOESM10 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 10: Figure S6. Activities of crude enzymes from PoxClrB, POX02484, and POX08522 dele...

MOESM8 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 8: Figure S4. Phenotypic comparison of wild-type P. oxalicum strain HP7-1 and the ΔP...

MOESM1 of How an essential Zn2Cys6 transcription factor PoxCxrA regulates cellulase gene expression in ascomycete fungi?

Lu-Sheng Liao (3499220)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Yu-Si Yan (3499211)
Xue-Mei Luo (5830109)
Shuai Zhao (803827)
Jia-Xun Feng (41405)

May 2019

Additional file 1: Table S1. Summary of transcriptomic data generated from Penicillium oxalicum

MOESM2 of How an essential Zn2Cys6 transcription factor PoxCxrA regulates cellulase gene expression in ascomycete fungi?

Lu-Sheng Liao (3499220)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Yu-Si Yan (3499211)
Xue-Mei Luo (5830109)
Shuai Zhao (803827)
Jia-Xun Feng (41405)

May 2019

Additional file 2: Figure S1. Pearson’s correlation analysis of transcriptomes from Penicillium oxal...

MOESM2 of Combining manipulation of transcription factors and overexpression of the target genes to enhance lignocellulolytic enzyme production in Penicillium oxalicum

Liwei Gao (794309)
Zhonghai Li (460152)
Chengqiang Xia (3938972)
Yinbo Qu (122920)
Meng Liu (261774)
Piao Yang (794311)
Lele Yu (3938969)
Xin Song (465237)

April 2017

Additional file 2. Fig. S2 Activity analysis of lignocellulolytic enzymes by zymography. (A-C) Xylan...

MOESM1 of Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression

Shuai Zhao (803827)
Qi Liu (33068)
Jiu-Xiang Wang (6652502)
Xu-Zhong Liao (6652508)
Hao Guo (346528)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Lu-Sheng Liao (3499220)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

April 2019

Additional file 1: Table S1. Summary of RNA-sequencing data generated from P. oxalicum strain HP7-1

MOESM5 of Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression

Shuai Zhao (803827)
Qi Liu (33068)
Jiu-Xiang Wang (6652502)
Xu-Zhong Liao (6652508)
Hao Guo (346528)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Lu-Sheng Liao (3499220)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

April 2019

Additional file 5: Table S4. Candidate regulatory genes knocked out in P. oxalicum

MOESM7 of Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression

Shuai Zhao (803827)
Qi Liu (33068)
Jiu-Xiang Wang (6652502)
Xu-Zhong Liao (6652508)
Hao Guo (346528)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Lu-Sheng Liao (3499220)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

April 2019

Additional file 7: Figure S3. Growth curve of P. oxalicum mutants ÎPoxMBF1 and ÎPoxKu70 in glucose...

MOESM4 of Production of a high-efficiency cellulase complex via β-glucosidase engineering in Penicillium oxalicum

Guangshan Yao (794307)
Ruimei Wu (794308)
Qinbiao Kan (794310)
Liwei Gao (794309)
Meng Liu (261774)
Piao Yang (794311)
Jian Du (360004)
Zhonghai Li (460152)
Yinbo Qu (122920)

March 2016

Additional file 4: Figure S4. qPCR analysis of the transcription change of cbh1and eg1 The transcrip...

MOESM2 of Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression

Shuai Zhao (803827)
Qi Liu (33068)
Jiu-Xiang Wang (6652502)
Xu-Zhong Liao (6652508)
Hao Guo (346528)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Lu-Sheng Liao (3499220)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

April 2019

Additional file 2: Table S2. DEGs identified in P. oxalicum strain HP7-1 grown in solid medium conta...

MOESM10 of Transcriptomic profiling and genetic analyses reveal novel key regulators of cellulase and xylanase gene expression in Penicillium oxalicum

Abstract

Extracted data

MOESM10 of Transcriptomic profiling and genetic analyses reveal novel key regulators of cellulase and xylanase gene expression in Penicillium oxalicum

Abstract

Extracted data

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