MOESM1 of Automated growth rate determination in high-throughput microbioreactor systems

MOESM5 of Bioreactor performance parameters for an industrially-promising methanotroph Methylomicrobium buryatense 5GB1

Alexey Gilman (3445502)
Lieve Laurens (453686)
Aaron Puri (3445505)
Frances Chu (2700670)
Philip Pienkos (3411200)
Mary Lidstrom (3411206)

November 2015

Additional file 5. FM50 Cell Density and Gas Uptake. Replicate bioreactor experiment of continues cu...

MOESM3 of Bioreactor performance parameters for an industrially-promising methanotroph Methylomicrobium buryatense 5GB1

Alexey Gilman (3445502)
Lieve Laurens (453686)
Aaron Puri (3445505)
Frances Chu (2700670)
Philip Pienkos (3411200)
Mary Lidstrom (3411206)

November 2015

Additional file 3. FM23 Headspace Gas Composition. Replicate bioreactor experiment of unrestricted g...

MOESM1 of Maximizing gain in high-throughput screening using conformal prediction

Fredrik Svensson (1292214)
Avid Afzal (3768106)
Ulf Norinder (827452)
Andreas Bender (192334)

February 2018

Additional file 1. Plots showing the results of the gain-cost function for each dataset using three ...

MOESM2 of Automated growth rate determination in high-throughput microbioreactor systems

Johannes Hemmerich (3483032)
Wolfgang Wiechert (39471)
Marco Oldiges (3398621)

November 2017

Additional file 2. MATLAB live script executing all steps for automated growth rate calculation as a...

Automated growth rate determination in high-throughput microbioreactor systems

Hemmerich, Johannes
Wiechert, Wolfgang
Oldiges, Marco

January 2017

ObjectiveThe calculation of growth rates provides basic metric for biological fitness and is standar...

MOESM5 of Maintenance-energy requirements and robustness of Saccharomyces cerevisiae at aerobic near-zero specific growth rates

Tim Vos (3428057)
Xavier Hakkaart (3523034)
Erik Hulster (3523037)
Antonius Maris (3407954)
Jack Pronk (3407960)
Pascale Daran-Lapujade (68640)

June 2016

Additional file 5. Three files encompassing the MATLAB model to predict biomass accumulation, specif...

MOESM1 of Comparison of statistical models to estimate parasite growth rate in the induced blood stage malaria model

Leesa Wockner (126604)
Isabell Hoffmann (3353600)
Peter OâRourke (4393465)
James McCarthy (243966)
Louise Marquart (138077)

August 2017

Additional file 1. Parasite growth rate and coefficient of multiple determinations of log-linear mod...

MOESM1 of A model for the biomass–density dynamics of seagrasses developed and calibrated on global data

Vasco Vieira (319115)
Inês Lopes (5874902)
Joel Creed (5874908)

January 2019

Additional file 1. Matlab executable file running the biomass-density seagrass growth model with par...

A ready-to-use logistic regression implemented in R shiny to estimate growth parameters of microorganisms

Garel Marc
Izard Lloyd
Vienne Marthe
Nerini David
Tamburini Christian
Martini Séverine

October 2020

Modeling approaches have existed for many years to describe the growth of microorganisms under vario...

MOESM3 of Simulating cyanobacterial phenotypes by integrating flux balance analysis, kinetics, and a light distribution function

Lian He (547346)
Stephen Wu (659541)
Ni Wan (190303)
Adrienne Reding (3488453)
Yinjie Tang (1591138)

December 2015

Additional file 3. MATLAB file for simulating cyanobacterial performance in PBRs

High-Throughput Growth Rate Determination of Bacteria Micro colonies on Single Cell Level

Grünberger, Alexander
Probst, Christopher
Wiechert, Wolfgang
Kohlheyer, Dietrich

January 2012

Grünberger A, Probst C, Wiechert W, Kohlheyer D. High-Throughput Growth Rate Determination of Bacter...

MOESM1 of Deciphering cyanobacterial phenotypes for fast photoautotrophic growth via isotopically nonstationary metabolic flux analysis

Mary Abernathy (4599118)
Jingjie Yu (3549059)
Fangfang Ma (1482463)
Michelle Liberton (230008)
Justin Ungerer (3463427)
Whitney Hollinshead (3522101)
Saratram Gopalakrishnan (3441371)
Lian He (547346)
Costas Maranas (1310631)
Himadri Pakrasi (3463430)
Doug Allen (4599115)
Yinjie Tang (1591138)

November 2017

Additional file 1. Â Deciphering cyanobacterial phenotypes for fast photoautotrophic growth via isot...

MOESM1 of Harvesting of freshwater microalgae with microbial bioflocculant: a pilot-scale study

Theoneste Ndikubwimana (3535079)
Xianhai Zeng (1327254)
Theophile Murwanashyaka (3535082)
Emmanuel Manirafasha (3535085)
Ning He (384285)
Wenyao Shao (3535076)
Yinghua Lu (518136)

February 2016

Additional file 1: Figure S1. Glucose and BSA standard curves. The standard curve describes glucose ...

MOESM1 of Bioreactor performance parameters for an industrially-promising methanotroph Methylomicrobium buryatense 5GB1

Alexey Gilman (3445502)
Lieve Laurens (453686)
Aaron Puri (3445505)
Frances Chu (2700670)
Philip Pienkos (3411200)
Mary Lidstrom (3411206)

November 2015

Additional file 1: Table S1 . 5GB1 fatty acid composition when grown on methane and methanol. M. bur...

MOESM1 of A global analysis of gene expression in Fibrobacter succinogenes S85 grown on cellulose and soluble sugars at different growth rates

Anthony Neumann (5902886)
Paul Weimer (5902889)
Garret Suen (22423)

October 2018

Additional file 1: Table S1. Cellular protein measurements. Table S2. Normalized expression - summar...

MOESM5 of Bioreactor performance parameters for an industrially-promising methanotroph Methylomicrobium buryatense 5GB1

Alexey Gilman (3445502)
Lieve Laurens (453686)
Aaron Puri (3445505)
Frances Chu (2700670)
Philip Pienkos (3411200)
Mary Lidstrom (3411206)

November 2015

Additional file 5. FM50 Cell Density and Gas Uptake. Replicate bioreactor experiment of continues cu...

MOESM3 of Bioreactor performance parameters for an industrially-promising methanotroph Methylomicrobium buryatense 5GB1

Alexey Gilman (3445502)
Lieve Laurens (453686)
Aaron Puri (3445505)
Frances Chu (2700670)
Philip Pienkos (3411200)
Mary Lidstrom (3411206)

November 2015

Additional file 3. FM23 Headspace Gas Composition. Replicate bioreactor experiment of unrestricted g...

MOESM1 of Maximizing gain in high-throughput screening using conformal prediction

Fredrik Svensson (1292214)
Avid Afzal (3768106)
Ulf Norinder (827452)
Andreas Bender (192334)

February 2018

Additional file 1. Plots showing the results of the gain-cost function for each dataset using three ...

MOESM2 of Automated growth rate determination in high-throughput microbioreactor systems

Johannes Hemmerich (3483032)
Wolfgang Wiechert (39471)
Marco Oldiges (3398621)

November 2017

Additional file 2. MATLAB live script executing all steps for automated growth rate calculation as a...

Automated growth rate determination in high-throughput microbioreactor systems

Hemmerich, Johannes
Wiechert, Wolfgang
Oldiges, Marco

January 2017

ObjectiveThe calculation of growth rates provides basic metric for biological fitness and is standar...

MOESM5 of Maintenance-energy requirements and robustness of Saccharomyces cerevisiae at aerobic near-zero specific growth rates

Tim Vos (3428057)
Xavier Hakkaart (3523034)
Erik Hulster (3523037)
Antonius Maris (3407954)
Jack Pronk (3407960)
Pascale Daran-Lapujade (68640)

June 2016

Additional file 5. Three files encompassing the MATLAB model to predict biomass accumulation, specif...

MOESM1 of Comparison of statistical models to estimate parasite growth rate in the induced blood stage malaria model

Leesa Wockner (126604)
Isabell Hoffmann (3353600)
Peter OâRourke (4393465)
James McCarthy (243966)
Louise Marquart (138077)

August 2017

Additional file 1. Parasite growth rate and coefficient of multiple determinations of log-linear mod...

MOESM1 of A model for the biomass–density dynamics of seagrasses developed and calibrated on global data

Vasco Vieira (319115)
Inês Lopes (5874902)
Joel Creed (5874908)

January 2019

Additional file 1. Matlab executable file running the biomass-density seagrass growth model with par...

A ready-to-use logistic regression implemented in R shiny to estimate growth parameters of microorganisms

Garel Marc
Izard Lloyd
Vienne Marthe
Nerini David
Tamburini Christian
Martini Séverine

October 2020

Modeling approaches have existed for many years to describe the growth of microorganisms under vario...

MOESM3 of Simulating cyanobacterial phenotypes by integrating flux balance analysis, kinetics, and a light distribution function

Lian He (547346)
Stephen Wu (659541)
Ni Wan (190303)
Adrienne Reding (3488453)
Yinjie Tang (1591138)

December 2015

Additional file 3. MATLAB file for simulating cyanobacterial performance in PBRs

High-Throughput Growth Rate Determination of Bacteria Micro colonies on Single Cell Level

Grünberger, Alexander
Probst, Christopher
Wiechert, Wolfgang
Kohlheyer, Dietrich

January 2012

Grünberger A, Probst C, Wiechert W, Kohlheyer D. High-Throughput Growth Rate Determination of Bacter...

MOESM1 of Deciphering cyanobacterial phenotypes for fast photoautotrophic growth via isotopically nonstationary metabolic flux analysis

Mary Abernathy (4599118)
Jingjie Yu (3549059)
Fangfang Ma (1482463)
Michelle Liberton (230008)
Justin Ungerer (3463427)
Whitney Hollinshead (3522101)
Saratram Gopalakrishnan (3441371)
Lian He (547346)
Costas Maranas (1310631)
Himadri Pakrasi (3463430)
Doug Allen (4599115)
Yinjie Tang (1591138)

November 2017

Additional file 1. Â Deciphering cyanobacterial phenotypes for fast photoautotrophic growth via isot...

MOESM1 of Harvesting of freshwater microalgae with microbial bioflocculant: a pilot-scale study

Theoneste Ndikubwimana (3535079)
Xianhai Zeng (1327254)
Theophile Murwanashyaka (3535082)
Emmanuel Manirafasha (3535085)
Ning He (384285)
Wenyao Shao (3535076)
Yinghua Lu (518136)

February 2016

Additional file 1: Figure S1. Glucose and BSA standard curves. The standard curve describes glucose ...

MOESM1 of Bioreactor performance parameters for an industrially-promising methanotroph Methylomicrobium buryatense 5GB1

Alexey Gilman (3445502)
Lieve Laurens (453686)
Aaron Puri (3445505)
Frances Chu (2700670)
Philip Pienkos (3411200)
Mary Lidstrom (3411206)

November 2015

Additional file 1: Table S1 . 5GB1 fatty acid composition when grown on methane and methanol. M. bur...

MOESM1 of A global analysis of gene expression in Fibrobacter succinogenes S85 grown on cellulose and soluble sugars at different growth rates

Anthony Neumann (5902886)
Paul Weimer (5902889)
Garret Suen (22423)

October 2018

Additional file 1: Table S1. Cellular protein measurements. Table S2. Normalized expression - summar...

MOESM5 of Bioreactor performance parameters for an industrially-promising methanotroph Methylomicrobium buryatense 5GB1

Alexey Gilman (3445502)
Lieve Laurens (453686)
Aaron Puri (3445505)
Frances Chu (2700670)
Philip Pienkos (3411200)
Mary Lidstrom (3411206)

November 2015

Additional file 5. FM50 Cell Density and Gas Uptake. Replicate bioreactor experiment of continues cu...

MOESM3 of Bioreactor performance parameters for an industrially-promising methanotroph Methylomicrobium buryatense 5GB1

Alexey Gilman (3445502)
Lieve Laurens (453686)
Aaron Puri (3445505)
Frances Chu (2700670)
Philip Pienkos (3411200)
Mary Lidstrom (3411206)

November 2015

Additional file 3. FM23 Headspace Gas Composition. Replicate bioreactor experiment of unrestricted g...

MOESM1 of Maximizing gain in high-throughput screening using conformal prediction

Fredrik Svensson (1292214)
Avid Afzal (3768106)
Ulf Norinder (827452)
Andreas Bender (192334)

February 2018

Additional file 1. Plots showing the results of the gain-cost function for each dataset using three ...

MOESM1 of Automated growth rate determination in high-throughput microbioreactor systems

Abstract

Extracted data

MOESM1 of Automated growth rate determination in high-throughput microbioreactor systems

Abstract

Extracted data

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