MOESM11 of Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid-mediated lignification of switchgrass suspension cells

Monosaccharide composition of the matrix polysaccharides in stem cell walls of sudangrass.

Alberto Acevedo (6729980)
Rachael Simister (3152475)
Simon J. McQueen-Mason (3071964)
Leonardo D. Gómez (3152478)

May 2019

Monosaccharide composition of the matrix polysaccharides by sudangrass genotype. Note that GalA, Xyl...

MOESM11 of Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing

Chunman Zuo (5431331)
Matthew Blow (5431334)
Avinash Sreedasyam (246203)
Rita Kuo (714960)
Govindarajan Ramamoorthy (5431337)
Ivone Torres-Jerez (40667)
Guifen Li (416172)
Mei Wang (130842)
David Dilworth (5431328)
Kerrie Barry (276529)
Michael Udvardi (429853)
Jeremy Schmutz (172027)
Yuhong Tang (56216)
Ying Xu (9172)

June 2018

Additional file 11: Table S1. A summary of six classifications based on the presence of 5â˛ primer,...

Data_Sheet_1_Phenylpropanoid Biosynthesis Gene Expression Precedes Lignin Accumulation During Shoot Development in Lowland and Upland Switchgrass Genotypes.docx

Prasenjit Saha (623445)
Fan Lin (625737)
Sandra Thibivilliers (6669908)
Yi Xiong (142047)
Chongle Pan (117744)
Laura E. Bartley (7517027)

August 2021

Efficient conversion of lignocellulosic biomass into biofuels is influenced by biomass composition a...

MOESM5 of Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid-mediated lignification of switchgrass suspension cells

Xiaolan Rao (4632031)
Hui Shen (66625)
Sivakumar Pattathil (282269)
Michael Hahn (346193)
Ivana Gelineo-Albersheim (4247932)
Debra Mohnen (4247920)
Yunqiao Pu (678767)
Arthur Ragauskas (19610)
Xin Chen (14149)
Fang Chen (34476)
Richard Dixon (3416687)

November 2017

Additional file 5: Table S3. Cell wall-related functional groups in switchgrass suspension cells

MOESM1 of Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid-mediated lignification of switchgrass suspension cells

Xiaolan Rao (4632031)
Hui Shen (66625)
Sivakumar Pattathil (282269)
Michael Hahn (346193)
Ivana Gelineo-Albersheim (4247932)
Debra Mohnen (4247920)
Yunqiao Pu (678767)
Arthur Ragauskas (19610)
Xin Chen (14149)
Fang Chen (34476)
Richard Dixon (3416687)

November 2017

Additional file 1: Figure S1. Comparison of the monosaccharide composition of switchgrass suspension...

Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid‑mediated lignification of switchgrass suspension cells

Rao, Xiaolan
Shen, Hui
Pattathil, Sivakumar
Hahn, Michael G.
Gelineo-Albersheim, Ivana
Mohnen, Debra
Pu, Yunqiao
Ragauskas, Arthur J. (Arthur Jonas), 1957-
Chen, Xin
Chen, Fang
Dixon, R. A.

November 2017

This article provides an overview of the dynamic compositional changes during brassinosteroid-induce...

Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid-mediated lignification of switchgrass suspension cells

Xiaolan Rao
Hui Shen
Sivakumar Pattathil
Michael G. Hahn
Ivana Gelineo-Albersheim
Debra Mohnen
Yunqiao Pu
Arthur J. Ragauskas
Xin Chen
Fang Chen
Richard A. Dixon

November 2017

Abstract Background Plant cell walls contribute the majority of plant biomass that can be used to pr...

MOESM1 of Study of traits and recalcitrance reduction of field-grown COMT down-regulated switchgrass

Mi Li (237587)
Yunqiao Pu (678767)
Chang Yoo (3436814)
Erica Gjersing (1235874)
Stephen Decker (3582647)
Crissa Doeppke (3614183)
Todd Shollenberger (3614195)
Timothy Tschaplinski (3436805)
Nancy Engle (3436811)
Robert Sykes (236822)
Mark Davis (144230)
Holly Baxter (3614189)
Mitra Mazarei (3614186)
Chunxiang Fu (3428558)
Richard Dixon (3416687)
Zeng-Yu Wang (90800)
C. Neal Stewart (3614192)
Arthur Ragauskas (19610)

January 2017

Additional file 1. Supporting figures and tables of understanding the reduced cell wall recalcitranc...

MOESM4 of Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis

Avinash Srivastava (3416675)
Fang Chen (34476)
Tui Ray (3416681)
Sivakumar Pattathil (282269)
Maria PeĂąa (3416684)
Utku Avci (282268)
Hongjia Li (2426725)
David Huhman (1324956)
Jason Backe (3416678)
Breeanna Urbanowicz (3416699)
Jeffrey Miller (2096782)
Mohamed Bedair (337947)
Charles Wyman (3416696)
Lloyd Sumner (3416672)
William York (3416693)
Michael Hahn (346193)
Richard Dixon (3416687)
Elison Blancaflor (3416690)
Yuhong Tang (56216)

December 2015

Additional file 4: Fig. S3. Chromatographic profiles of wild-type and fpgs1 stem tissue samples anal...

MOESM8 of Integrated omics analyses reveal the details of metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the deconstruction of switchgrass

Suresh Poudel (3627245)
Richard Giannone (3455150)
Miguel Rodriguez (1594399)
Babu Raman (264806)
Madhavi Martin (3627248)
Nancy Engle (3436811)
Jonathan Mielenz (3627242)
Intawat Nookaew (163890)
Steven Brown (637397)
Timothy Tschaplinski (3436805)
David Ussery (81242)
Robert Hettich (3455141)

January 2017

Additional file 8: Fig. S1. Temporal expression based clustering of proteins differentially expresse...

Table_5_Phenylpropanoid Biosynthesis Gene Expression Precedes Lignin Accumulation During Shoot Development in Lowland and Upland Switchgrass Genotypes.XLSX

Prasenjit Saha (623445)
Fan Lin (625737)
Sandra Thibivilliers (6669908)
Yi Xiong (142047)
Chongle Pan (117744)
Laura E. Bartley (7517027)

August 2021

Efficient conversion of lignocellulosic biomass into biofuels is influenced by biomass composition a...

MOESM2 of Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis

Avinash Srivastava (3416675)
Fang Chen (34476)
Tui Ray (3416681)
Sivakumar Pattathil (282269)
Maria Peña (3416822)
Utku Avci (282268)
Hongjia Li (2426725)
David Huhman (1324956)
Jason Backe (3416678)
Breeanna Urbanowicz (3416699)
Jeffrey Miller (2096782)
Mohamed Bedair (337947)
Charles Wyman (3416696)
Lloyd Sumner (3416672)
William York (3416693)
Michael Hahn (346193)
Richard Dixon (3416687)
Elison Blancaflor (3416690)
Yuhong Tang (56216)

December 2015

Additional file 2: Fig. S2. Metabolite profiling in 7-day-old whole seedlings of wild type and fpgs1...

Table_4_Phenylpropanoid Biosynthesis Gene Expression Precedes Lignin Accumulation During Shoot Development in Lowland and Upland Switchgrass Genotypes.XLSX

Prasenjit Saha (623445)
Fan Lin (625737)
Sandra Thibivilliers (6669908)
Yi Xiong (142047)
Chongle Pan (117744)
Laura E. Bartley (7517027)

August 2021

Efficient conversion of lignocellulosic biomass into biofuels is influenced by biomass composition a...

Table_2_Phenylpropanoid Biosynthesis Gene Expression Precedes Lignin Accumulation During Shoot Development in Lowland and Upland Switchgrass Genotypes.XLSX

Prasenjit Saha (623445)
Fan Lin (625737)
Sandra Thibivilliers (6669908)
Yi Xiong (142047)
Chongle Pan (117744)
Laura E. Bartley (7517027)

August 2021

Efficient conversion of lignocellulosic biomass into biofuels is influenced by biomass composition a...

Table_3_Phenylpropanoid Biosynthesis Gene Expression Precedes Lignin Accumulation During Shoot Development in Lowland and Upland Switchgrass Genotypes.XLSX

Prasenjit Saha (623445)
Fan Lin (625737)
Sandra Thibivilliers (6669908)
Yi Xiong (142047)
Chongle Pan (117744)
Laura E. Bartley (7517027)

August 2021

Efficient conversion of lignocellulosic biomass into biofuels is influenced by biomass composition a...

Monosaccharide composition of the matrix polysaccharides in stem cell walls of sudangrass.

Alberto Acevedo (6729980)
Rachael Simister (3152475)
Simon J. McQueen-Mason (3071964)
Leonardo D. Gómez (3152478)

May 2019

Monosaccharide composition of the matrix polysaccharides by sudangrass genotype. Note that GalA, Xyl...

MOESM11 of Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing

Chunman Zuo (5431331)
Matthew Blow (5431334)
Avinash Sreedasyam (246203)
Rita Kuo (714960)
Govindarajan Ramamoorthy (5431337)
Ivone Torres-Jerez (40667)
Guifen Li (416172)
Mei Wang (130842)
David Dilworth (5431328)
Kerrie Barry (276529)
Michael Udvardi (429853)
Jeremy Schmutz (172027)
Yuhong Tang (56216)
Ying Xu (9172)

June 2018

Additional file 11: Table S1. A summary of six classifications based on the presence of 5â˛ primer,...

Data_Sheet_1_Phenylpropanoid Biosynthesis Gene Expression Precedes Lignin Accumulation During Shoot Development in Lowland and Upland Switchgrass Genotypes.docx

Prasenjit Saha (623445)
Fan Lin (625737)
Sandra Thibivilliers (6669908)
Yi Xiong (142047)
Chongle Pan (117744)
Laura E. Bartley (7517027)

August 2021

Efficient conversion of lignocellulosic biomass into biofuels is influenced by biomass composition a...

MOESM5 of Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid-mediated lignification of switchgrass suspension cells

Xiaolan Rao (4632031)
Hui Shen (66625)
Sivakumar Pattathil (282269)
Michael Hahn (346193)
Ivana Gelineo-Albersheim (4247932)
Debra Mohnen (4247920)
Yunqiao Pu (678767)
Arthur Ragauskas (19610)
Xin Chen (14149)
Fang Chen (34476)
Richard Dixon (3416687)

November 2017

Additional file 5: Table S3. Cell wall-related functional groups in switchgrass suspension cells

MOESM1 of Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid-mediated lignification of switchgrass suspension cells

Xiaolan Rao (4632031)
Hui Shen (66625)
Sivakumar Pattathil (282269)
Michael Hahn (346193)
Ivana Gelineo-Albersheim (4247932)
Debra Mohnen (4247920)
Yunqiao Pu (678767)
Arthur Ragauskas (19610)
Xin Chen (14149)
Fang Chen (34476)
Richard Dixon (3416687)

November 2017

Additional file 1: Figure S1. Comparison of the monosaccharide composition of switchgrass suspension...

Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid‑mediated lignification of switchgrass suspension cells

Rao, Xiaolan
Shen, Hui
Pattathil, Sivakumar
Hahn, Michael G.
Gelineo-Albersheim, Ivana
Mohnen, Debra
Pu, Yunqiao
Ragauskas, Arthur J. (Arthur Jonas), 1957-
Chen, Xin
Chen, Fang
Dixon, R. A.

November 2017

This article provides an overview of the dynamic compositional changes during brassinosteroid-induce...

Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid-mediated lignification of switchgrass suspension cells

Xiaolan Rao
Hui Shen
Sivakumar Pattathil
Michael G. Hahn
Ivana Gelineo-Albersheim
Debra Mohnen
Yunqiao Pu
Arthur J. Ragauskas
Xin Chen
Fang Chen
Richard A. Dixon

November 2017

Abstract Background Plant cell walls contribute the majority of plant biomass that can be used to pr...

MOESM1 of Study of traits and recalcitrance reduction of field-grown COMT down-regulated switchgrass

Mi Li (237587)
Yunqiao Pu (678767)
Chang Yoo (3436814)
Erica Gjersing (1235874)
Stephen Decker (3582647)
Crissa Doeppke (3614183)
Todd Shollenberger (3614195)
Timothy Tschaplinski (3436805)
Nancy Engle (3436811)
Robert Sykes (236822)
Mark Davis (144230)
Holly Baxter (3614189)
Mitra Mazarei (3614186)
Chunxiang Fu (3428558)
Richard Dixon (3416687)
Zeng-Yu Wang (90800)
C. Neal Stewart (3614192)
Arthur Ragauskas (19610)

January 2017

Additional file 1. Supporting figures and tables of understanding the reduced cell wall recalcitranc...

MOESM4 of Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis

Avinash Srivastava (3416675)
Fang Chen (34476)
Tui Ray (3416681)
Sivakumar Pattathil (282269)
Maria PeĂąa (3416684)
Utku Avci (282268)
Hongjia Li (2426725)
David Huhman (1324956)
Jason Backe (3416678)
Breeanna Urbanowicz (3416699)
Jeffrey Miller (2096782)
Mohamed Bedair (337947)
Charles Wyman (3416696)
Lloyd Sumner (3416672)
William York (3416693)
Michael Hahn (346193)
Richard Dixon (3416687)
Elison Blancaflor (3416690)
Yuhong Tang (56216)

December 2015

Additional file 4: Fig. S3. Chromatographic profiles of wild-type and fpgs1 stem tissue samples anal...

MOESM8 of Integrated omics analyses reveal the details of metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the deconstruction of switchgrass

Suresh Poudel (3627245)
Richard Giannone (3455150)
Miguel Rodriguez (1594399)
Babu Raman (264806)
Madhavi Martin (3627248)
Nancy Engle (3436811)
Jonathan Mielenz (3627242)
Intawat Nookaew (163890)
Steven Brown (637397)
Timothy Tschaplinski (3436805)
David Ussery (81242)
Robert Hettich (3455141)

January 2017

Additional file 8: Fig. S1. Temporal expression based clustering of proteins differentially expresse...

Table_5_Phenylpropanoid Biosynthesis Gene Expression Precedes Lignin Accumulation During Shoot Development in Lowland and Upland Switchgrass Genotypes.XLSX

Prasenjit Saha (623445)
Fan Lin (625737)
Sandra Thibivilliers (6669908)
Yi Xiong (142047)
Chongle Pan (117744)
Laura E. Bartley (7517027)

August 2021

Efficient conversion of lignocellulosic biomass into biofuels is influenced by biomass composition a...

MOESM2 of Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis

Avinash Srivastava (3416675)
Fang Chen (34476)
Tui Ray (3416681)
Sivakumar Pattathil (282269)
Maria Peña (3416822)
Utku Avci (282268)
Hongjia Li (2426725)
David Huhman (1324956)
Jason Backe (3416678)
Breeanna Urbanowicz (3416699)
Jeffrey Miller (2096782)
Mohamed Bedair (337947)
Charles Wyman (3416696)
Lloyd Sumner (3416672)
William York (3416693)
Michael Hahn (346193)
Richard Dixon (3416687)
Elison Blancaflor (3416690)
Yuhong Tang (56216)

December 2015

Additional file 2: Fig. S2. Metabolite profiling in 7-day-old whole seedlings of wild type and fpgs1...

Table_4_Phenylpropanoid Biosynthesis Gene Expression Precedes Lignin Accumulation During Shoot Development in Lowland and Upland Switchgrass Genotypes.XLSX

Prasenjit Saha (623445)
Fan Lin (625737)
Sandra Thibivilliers (6669908)
Yi Xiong (142047)
Chongle Pan (117744)
Laura E. Bartley (7517027)

August 2021

Efficient conversion of lignocellulosic biomass into biofuels is influenced by biomass composition a...

Table_2_Phenylpropanoid Biosynthesis Gene Expression Precedes Lignin Accumulation During Shoot Development in Lowland and Upland Switchgrass Genotypes.XLSX

Prasenjit Saha (623445)
Fan Lin (625737)
Sandra Thibivilliers (6669908)
Yi Xiong (142047)
Chongle Pan (117744)
Laura E. Bartley (7517027)

August 2021

Efficient conversion of lignocellulosic biomass into biofuels is influenced by biomass composition a...

Table_3_Phenylpropanoid Biosynthesis Gene Expression Precedes Lignin Accumulation During Shoot Development in Lowland and Upland Switchgrass Genotypes.XLSX

Prasenjit Saha (623445)
Fan Lin (625737)
Sandra Thibivilliers (6669908)
Yi Xiong (142047)
Chongle Pan (117744)
Laura E. Bartley (7517027)

August 2021

Efficient conversion of lignocellulosic biomass into biofuels is influenced by biomass composition a...

Monosaccharide composition of the matrix polysaccharides in stem cell walls of sudangrass.

Alberto Acevedo (6729980)
Rachael Simister (3152475)
Simon J. McQueen-Mason (3071964)
Leonardo D. Gómez (3152478)

May 2019

Monosaccharide composition of the matrix polysaccharides by sudangrass genotype. Note that GalA, Xyl...

MOESM11 of Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing

Chunman Zuo (5431331)
Matthew Blow (5431334)
Avinash Sreedasyam (246203)
Rita Kuo (714960)
Govindarajan Ramamoorthy (5431337)
Ivone Torres-Jerez (40667)
Guifen Li (416172)
Mei Wang (130842)
David Dilworth (5431328)
Kerrie Barry (276529)
Michael Udvardi (429853)
Jeremy Schmutz (172027)
Yuhong Tang (56216)
Ying Xu (9172)

June 2018

Additional file 11: Table S1. A summary of six classifications based on the presence of 5â˛ primer,...

Data_Sheet_1_Phenylpropanoid Biosynthesis Gene Expression Precedes Lignin Accumulation During Shoot Development in Lowland and Upland Switchgrass Genotypes.docx

Prasenjit Saha (623445)
Fan Lin (625737)
Sandra Thibivilliers (6669908)
Yi Xiong (142047)
Chongle Pan (117744)
Laura E. Bartley (7517027)

August 2021

Efficient conversion of lignocellulosic biomass into biofuels is influenced by biomass composition a...

MOESM11 of Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid-mediated lignification of switchgrass suspension cells

Abstract

Extracted data

MOESM11 of Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid-mediated lignification of switchgrass suspension cells

Abstract

Extracted data

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