Additional file 14: Table S9. of Bile acid is a significant host factor shaping the gut microbiome of diet-induced obese mice

Additional file 2: Figure S1. of Prolonged transfer of feces from the lean mice modulates gut microbiota in obese mice

Maria Kulecka (2503180)
Agnieszka Paziewska (170076)
Natalia Zeber-Lubecka (800227)
Filip Ambrozkiewicz (800228)
Michal Kopczynski (3533504)
Urszula Kuklinska (3533501)
Kazimiera Pysniak (3533507)
Marta Gajewska (619426)
Michal Mikula (240599)
Jerzy Ostrowski (170111)

August 2016

Rarefraction curves from all samples on family level drawn with MEGAN5 software. (PDF 4369Â kb

MOESM2 of Fecal microbiota and bile acid interactions with systemic and adipose tissue metabolism in diet-induced weight loss of obese postmenopausal women

JosĂŠ AlemĂĄn (5712467)
Nicholas Bokulich (3550310)
Jonathan Swann (631121)
Jeanne Walker (1405390)
Joel Rosa (5712461)
Thomas Battaglia (3550319)
Adele Costabile (346639)
Alexandros Pechlivanis (704791)
Yupu Liang (19283)
Jan Breslow (5712464)
Martin Blaser (2167843)
Peter Holt (4331755)

September 2018

Additional file 2. Pairwise correlation tables. Table S1. Plasma metabolomic-fecal microbiota correl...

Table_2_Genetically Obese Human Gut Microbiota Induces Liver Steatosis in Germ-Free Mice Fed on Normal Diet.XLSX

Ruirui Wang (1493308)
Hui Li (32376)
Xin Yang (104842)
Xinhe Xue (5538833)
Liman Deng (5538836)
Jian Shen (124641)
Menghui Zhang (147493)
Liping Zhao (147534)
Chenhong Zhang (147521)

July 2018

<p>Dysbiotic gut microbiota contributes to genetically obese phenotype in human. However, the effect...

Additional file 12: Table S8. of Bile acid is a significant host factor shaping the gut microbiome of diet-induced obese mice

Xiaojiao Zheng (1555471)
Fengjie Huang (1874893)
Aihua Zhao (136578)
Sha Lei (4687126)
Yunjing Zhang (4687129)
Guoxiang Xie (136575)
Tianlu Chen (136585)
Chun Qu (4687132)
Cynthia Rajani (2862428)
Bing Dong (94082)
Defa Li (2321131)
Wei Jia (136607)

December 2017

Time dependent alteration of bile acids and microbes in control and HFD groups. (XLSX 33 kb

Additional file 9: Table S6. of Bile acid is a significant host factor shaping the gut microbiome of diet-induced obese mice

Xiaojiao Zheng (1555471)
Fengjie Huang (1874893)
Aihua Zhao (136578)
Sha Lei (4687126)
Yunjing Zhang (4687129)
Guoxiang Xie (136575)
Tianlu Chen (136585)
Chun Qu (4687132)
Cynthia Rajani (2862428)
Bing Dong (94082)
Defa Li (2321131)
Wei Jia (136607)

December 2017

Linear discriminant analysis effect size analysis of microbiota in control and HFD groups. (XLSX 15 ...

Additional file 2: Figure S1. of Bile acid is a significant host factor shaping the gut microbiome of diet-induced obese mice

Xiaojiao Zheng (1555471)
Fengjie Huang (1874893)
Aihua Zhao (136578)
Sha Lei (4687126)
Yunjing Zhang (4687129)
Guoxiang Xie (136575)
Tianlu Chen (136585)
Chun Qu (4687132)
Cynthia Rajani (2862428)
Bing Dong (94082)
Defa Li (2321131)
Wei Jia (136607)

December 2017

The percentage of the number of metabolites in each type accounting for the total number. (DOC 50 kb

Additional file 8: Figure S3. of Bile acid is a significant host factor shaping the gut microbiome of diet-induced obese mice

Xiaojiao Zheng (1555471)
Fengjie Huang (1874893)
Aihua Zhao (136578)
Sha Lei (4687126)
Yunjing Zhang (4687129)
Guoxiang Xie (136575)
Tianlu Chen (136585)
Chun Qu (4687132)
Cynthia Rajani (2862428)
Bing Dong (94082)
Defa Li (2321131)
Wei Jia (136607)

December 2017

A linear discriminant analysis effect size cladogram representing the significantly different taxa i...

Additional file 5: of The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

Sarah Just (2632813)
Stanislas Mondot (5590778)
Josef Ecker (2053336)
Katrin Wegner (5590781)
Eva Rath (170714)
Laura Gau (5590787)
Theresa Streidl (5590790)
Genevieve Hery-Arnaud (5590796)
Sinah Schmidt (5590799)
Till Lesker (5590802)
Valentin Bieth (5590805)
Andreas Dunkel (1466371)
Till Strowig (86289)
Thomas Hofmann (77425)
Dirk Haller (374692)
Gerhard Liebisch (78400)
Philippe GĂŠrard (5590808)
Sascha Rohn (441006)
Patricia Lepage (522347)
Thomas Clavel (374686)

August 2018

Table S1. OTU-table based on high-throughput 16S rRNA amplicon analysis. Data were obtained and anal...

Additional file 7: of The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

Sarah Just (2632813)
Stanislas Mondot (5590778)
Josef Ecker (2053336)
Katrin Wegner (5590781)
Eva Rath (170714)
Laura Gau (5590787)
Theresa Streidl (5590790)
Genevieve Hery-Arnaud (5590796)
Sinah Schmidt (5590799)
Till Lesker (5590802)
Valentin Bieth (5590805)
Andreas Dunkel (1466371)
Till Strowig (86289)
Thomas Hofmann (77425)
Dirk Haller (374692)
Gerhard Liebisch (78400)
Philippe GĂŠrard (5590808)
Sascha Rohn (441006)
Patricia Lepage (522347)
Thomas Clavel (374686)

August 2018

Table S2. List of microbial genes differentially expressed in the cecum of mice fed high-fat diets s...

Additional file 1: of The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

Sarah Just (2632813)
Stanislas Mondot (5590778)
Josef Ecker (2053336)
Katrin Wegner (5590781)
Eva Rath (170714)
Laura Gau (5590787)
Theresa Streidl (5590790)
Genevieve Hery-Arnaud (5590796)
Sinah Schmidt (5590799)
Till Lesker (5590802)
Valentin Bieth (5590805)
Andreas Dunkel (1466371)
Till Strowig (86289)
Thomas Hofmann (77425)
Dirk Haller (374692)
Gerhard Liebisch (78400)
Philippe Gérard (3975779)
Sascha Rohn (441006)
Patricia Lepage (522347)
Thomas Clavel (374686)

August 2018

Figure S1. Experimental setup of the mouse trial. a Litter and cage distribution of mice used in the...

Additional file 3: of The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

Sarah Just (2632813)
Stanislas Mondot (5590778)
Josef Ecker (2053336)
Katrin Wegner (5590781)
Eva Rath (170714)
Laura Gau (5590787)
Theresa Streidl (5590790)
Genevieve Hery-Arnaud (5590796)
Sinah Schmidt (5590799)
Till Lesker (5590802)
Valentin Bieth (5590805)
Andreas Dunkel (1466371)
Till Strowig (86289)
Thomas Hofmann (77425)
Dirk Haller (374692)
Gerhard Liebisch (78400)
Philippe GĂŠrard (5590808)
Sascha Rohn (441006)
Patricia Lepage (522347)
Thomas Clavel (374686)

August 2018

Figure S3. Impact of experimental feedings and microbial colonization on the liver. a Liver to body ...

Additional file 4: of The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

Sarah Just (2632813)
Stanislas Mondot (5590778)
Josef Ecker (2053336)
Katrin Wegner (5590781)
Eva Rath (170714)
Laura Gau (5590787)
Theresa Streidl (5590790)
Genevieve Hery-Arnaud (5590796)
Sinah Schmidt (5590799)
Till Lesker (5590802)
Valentin Bieth (5590805)
Andreas Dunkel (1466371)
Till Strowig (86289)
Thomas Hofmann (77425)
Dirk Haller (374692)
Gerhard Liebisch (78400)
Philippe GĂŠrard (5590808)
Sascha Rohn (441006)
Patricia Lepage (522347)
Thomas Clavel (374686)

August 2018

Figure S4. Colonization status of SPF and GF mice. a Cecum to body weight ratio. b Viable bacterial ...

Additional file 2: of The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

Sarah Just (2632813)
Stanislas Mondot (5590778)
Josef Ecker (2053336)
Katrin Wegner (5590781)
Eva Rath (170714)
Laura Gau (5590787)
Theresa Streidl (5590790)
Genevieve Hery-Arnaud (5590796)
Sinah Schmidt (5590799)
Till Lesker (5590802)
Valentin Bieth (5590805)
Andreas Dunkel (1466371)
Till Strowig (86289)
Thomas Hofmann (77425)
Dirk Haller (374692)
Gerhard Liebisch (78400)
Philippe Gérard (3975779)
Sascha Rohn (441006)
Patricia Lepage (522347)
Thomas Clavel (374686)

August 2018

Figure S2. Impact of experimental feedings and microbial colonization on mouse metabolism. a Body we...

Bile acid is a significant host factor shaping the gut microbiome of diet-induced obese mice

Xiaojiao Zheng
Fengjie Huang
Aihua Zhao
Sha Lei
Yunjing Zhang
Guoxiang Xie
Tianlu Chen
Chun Qu
Cynthia Rajani
Bing Dong
Defa Li
Wei Jia

December 2017

Abstract Background Intestinal bacteria are known to regulate bile acid (BA) homeostasis via intesti...

Additional file 5: Table S4. of An obesity-associated gut microbiome reprograms the intestinal epigenome and leads to altered colonic gene expression

Yufeng Qin (290016)
John Roberts (403522)
Sara Grimm (3423287)
Fred Lih (4792725)
Leesa Deterding (2002492)
Ruifang Li (312039)
Kaliopi Chrysovergis (4792728)
Paul Wade (3271386)

January 2018

This Excel table provides the relative abundance of microbiota in donor mice and in recipient mice a...

Additional file 2: Figure S1. of Prolonged transfer of feces from the lean mice modulates gut microbiota in obese mice

Maria Kulecka (2503180)
Agnieszka Paziewska (170076)
Natalia Zeber-Lubecka (800227)
Filip Ambrozkiewicz (800228)
Michal Kopczynski (3533504)
Urszula Kuklinska (3533501)
Kazimiera Pysniak (3533507)
Marta Gajewska (619426)
Michal Mikula (240599)
Jerzy Ostrowski (170111)

August 2016

Rarefraction curves from all samples on family level drawn with MEGAN5 software. (PDF 4369Â kb

MOESM2 of Fecal microbiota and bile acid interactions with systemic and adipose tissue metabolism in diet-induced weight loss of obese postmenopausal women

JosĂŠ AlemĂĄn (5712467)
Nicholas Bokulich (3550310)
Jonathan Swann (631121)
Jeanne Walker (1405390)
Joel Rosa (5712461)
Thomas Battaglia (3550319)
Adele Costabile (346639)
Alexandros Pechlivanis (704791)
Yupu Liang (19283)
Jan Breslow (5712464)
Martin Blaser (2167843)
Peter Holt (4331755)

September 2018

Additional file 2. Pairwise correlation tables. Table S1. Plasma metabolomic-fecal microbiota correl...

Table_2_Genetically Obese Human Gut Microbiota Induces Liver Steatosis in Germ-Free Mice Fed on Normal Diet.XLSX

Ruirui Wang (1493308)
Hui Li (32376)
Xin Yang (104842)
Xinhe Xue (5538833)
Liman Deng (5538836)
Jian Shen (124641)
Menghui Zhang (147493)
Liping Zhao (147534)
Chenhong Zhang (147521)

July 2018

<p>Dysbiotic gut microbiota contributes to genetically obese phenotype in human. However, the effect...

Additional file 12: Table S8. of Bile acid is a significant host factor shaping the gut microbiome of diet-induced obese mice

Xiaojiao Zheng (1555471)
Fengjie Huang (1874893)
Aihua Zhao (136578)
Sha Lei (4687126)
Yunjing Zhang (4687129)
Guoxiang Xie (136575)
Tianlu Chen (136585)
Chun Qu (4687132)
Cynthia Rajani (2862428)
Bing Dong (94082)
Defa Li (2321131)
Wei Jia (136607)

December 2017

Time dependent alteration of bile acids and microbes in control and HFD groups. (XLSX 33 kb

Additional file 9: Table S6. of Bile acid is a significant host factor shaping the gut microbiome of diet-induced obese mice

Xiaojiao Zheng (1555471)
Fengjie Huang (1874893)
Aihua Zhao (136578)
Sha Lei (4687126)
Yunjing Zhang (4687129)
Guoxiang Xie (136575)
Tianlu Chen (136585)
Chun Qu (4687132)
Cynthia Rajani (2862428)
Bing Dong (94082)
Defa Li (2321131)
Wei Jia (136607)

December 2017

Linear discriminant analysis effect size analysis of microbiota in control and HFD groups. (XLSX 15 ...

Additional file 2: Figure S1. of Bile acid is a significant host factor shaping the gut microbiome of diet-induced obese mice

Xiaojiao Zheng (1555471)
Fengjie Huang (1874893)
Aihua Zhao (136578)
Sha Lei (4687126)
Yunjing Zhang (4687129)
Guoxiang Xie (136575)
Tianlu Chen (136585)
Chun Qu (4687132)
Cynthia Rajani (2862428)
Bing Dong (94082)
Defa Li (2321131)
Wei Jia (136607)

December 2017

The percentage of the number of metabolites in each type accounting for the total number. (DOC 50 kb

Additional file 8: Figure S3. of Bile acid is a significant host factor shaping the gut microbiome of diet-induced obese mice

Xiaojiao Zheng (1555471)
Fengjie Huang (1874893)
Aihua Zhao (136578)
Sha Lei (4687126)
Yunjing Zhang (4687129)
Guoxiang Xie (136575)
Tianlu Chen (136585)
Chun Qu (4687132)
Cynthia Rajani (2862428)
Bing Dong (94082)
Defa Li (2321131)
Wei Jia (136607)

December 2017

A linear discriminant analysis effect size cladogram representing the significantly different taxa i...

Additional file 5: of The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

Sarah Just (2632813)
Stanislas Mondot (5590778)
Josef Ecker (2053336)
Katrin Wegner (5590781)
Eva Rath (170714)
Laura Gau (5590787)
Theresa Streidl (5590790)
Genevieve Hery-Arnaud (5590796)
Sinah Schmidt (5590799)
Till Lesker (5590802)
Valentin Bieth (5590805)
Andreas Dunkel (1466371)
Till Strowig (86289)
Thomas Hofmann (77425)
Dirk Haller (374692)
Gerhard Liebisch (78400)
Philippe GĂŠrard (5590808)
Sascha Rohn (441006)
Patricia Lepage (522347)
Thomas Clavel (374686)

August 2018

Table S1. OTU-table based on high-throughput 16S rRNA amplicon analysis. Data were obtained and anal...

Additional file 7: of The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

Sarah Just (2632813)
Stanislas Mondot (5590778)
Josef Ecker (2053336)
Katrin Wegner (5590781)
Eva Rath (170714)
Laura Gau (5590787)
Theresa Streidl (5590790)
Genevieve Hery-Arnaud (5590796)
Sinah Schmidt (5590799)
Till Lesker (5590802)
Valentin Bieth (5590805)
Andreas Dunkel (1466371)
Till Strowig (86289)
Thomas Hofmann (77425)
Dirk Haller (374692)
Gerhard Liebisch (78400)
Philippe GĂŠrard (5590808)
Sascha Rohn (441006)
Patricia Lepage (522347)
Thomas Clavel (374686)

August 2018

Table S2. List of microbial genes differentially expressed in the cecum of mice fed high-fat diets s...

Additional file 1: of The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

Sarah Just (2632813)
Stanislas Mondot (5590778)
Josef Ecker (2053336)
Katrin Wegner (5590781)
Eva Rath (170714)
Laura Gau (5590787)
Theresa Streidl (5590790)
Genevieve Hery-Arnaud (5590796)
Sinah Schmidt (5590799)
Till Lesker (5590802)
Valentin Bieth (5590805)
Andreas Dunkel (1466371)
Till Strowig (86289)
Thomas Hofmann (77425)
Dirk Haller (374692)
Gerhard Liebisch (78400)
Philippe Gérard (3975779)
Sascha Rohn (441006)
Patricia Lepage (522347)
Thomas Clavel (374686)

August 2018

Figure S1. Experimental setup of the mouse trial. a Litter and cage distribution of mice used in the...

Additional file 3: of The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

Sarah Just (2632813)
Stanislas Mondot (5590778)
Josef Ecker (2053336)
Katrin Wegner (5590781)
Eva Rath (170714)
Laura Gau (5590787)
Theresa Streidl (5590790)
Genevieve Hery-Arnaud (5590796)
Sinah Schmidt (5590799)
Till Lesker (5590802)
Valentin Bieth (5590805)
Andreas Dunkel (1466371)
Till Strowig (86289)
Thomas Hofmann (77425)
Dirk Haller (374692)
Gerhard Liebisch (78400)
Philippe GĂŠrard (5590808)
Sascha Rohn (441006)
Patricia Lepage (522347)
Thomas Clavel (374686)

August 2018

Figure S3. Impact of experimental feedings and microbial colonization on the liver. a Liver to body ...

Additional file 4: of The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

Sarah Just (2632813)
Stanislas Mondot (5590778)
Josef Ecker (2053336)
Katrin Wegner (5590781)
Eva Rath (170714)
Laura Gau (5590787)
Theresa Streidl (5590790)
Genevieve Hery-Arnaud (5590796)
Sinah Schmidt (5590799)
Till Lesker (5590802)
Valentin Bieth (5590805)
Andreas Dunkel (1466371)
Till Strowig (86289)
Thomas Hofmann (77425)
Dirk Haller (374692)
Gerhard Liebisch (78400)
Philippe GĂŠrard (5590808)
Sascha Rohn (441006)
Patricia Lepage (522347)
Thomas Clavel (374686)

August 2018

Figure S4. Colonization status of SPF and GF mice. a Cecum to body weight ratio. b Viable bacterial ...

Additional file 2: of The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

Sarah Just (2632813)
Stanislas Mondot (5590778)
Josef Ecker (2053336)
Katrin Wegner (5590781)
Eva Rath (170714)
Laura Gau (5590787)
Theresa Streidl (5590790)
Genevieve Hery-Arnaud (5590796)
Sinah Schmidt (5590799)
Till Lesker (5590802)
Valentin Bieth (5590805)
Andreas Dunkel (1466371)
Till Strowig (86289)
Thomas Hofmann (77425)
Dirk Haller (374692)
Gerhard Liebisch (78400)
Philippe Gérard (3975779)
Sascha Rohn (441006)
Patricia Lepage (522347)
Thomas Clavel (374686)

August 2018

Figure S2. Impact of experimental feedings and microbial colonization on mouse metabolism. a Body we...

Bile acid is a significant host factor shaping the gut microbiome of diet-induced obese mice

Xiaojiao Zheng
Fengjie Huang
Aihua Zhao
Sha Lei
Yunjing Zhang
Guoxiang Xie
Tianlu Chen
Chun Qu
Cynthia Rajani
Bing Dong
Defa Li
Wei Jia

December 2017

Abstract Background Intestinal bacteria are known to regulate bile acid (BA) homeostasis via intesti...

Additional file 5: Table S4. of An obesity-associated gut microbiome reprograms the intestinal epigenome and leads to altered colonic gene expression

Yufeng Qin (290016)
John Roberts (403522)
Sara Grimm (3423287)
Fred Lih (4792725)
Leesa Deterding (2002492)
Ruifang Li (312039)
Kaliopi Chrysovergis (4792728)
Paul Wade (3271386)

January 2018

This Excel table provides the relative abundance of microbiota in donor mice and in recipient mice a...

Additional file 2: Figure S1. of Prolonged transfer of feces from the lean mice modulates gut microbiota in obese mice

Maria Kulecka (2503180)
Agnieszka Paziewska (170076)
Natalia Zeber-Lubecka (800227)
Filip Ambrozkiewicz (800228)
Michal Kopczynski (3533504)
Urszula Kuklinska (3533501)
Kazimiera Pysniak (3533507)
Marta Gajewska (619426)
Michal Mikula (240599)
Jerzy Ostrowski (170111)

August 2016

Rarefraction curves from all samples on family level drawn with MEGAN5 software. (PDF 4369Â kb

MOESM2 of Fecal microbiota and bile acid interactions with systemic and adipose tissue metabolism in diet-induced weight loss of obese postmenopausal women

JosĂŠ AlemĂĄn (5712467)
Nicholas Bokulich (3550310)
Jonathan Swann (631121)
Jeanne Walker (1405390)
Joel Rosa (5712461)
Thomas Battaglia (3550319)
Adele Costabile (346639)
Alexandros Pechlivanis (704791)
Yupu Liang (19283)
Jan Breslow (5712464)
Martin Blaser (2167843)
Peter Holt (4331755)

September 2018

Additional file 2. Pairwise correlation tables. Table S1. Plasma metabolomic-fecal microbiota correl...

Table_2_Genetically Obese Human Gut Microbiota Induces Liver Steatosis in Germ-Free Mice Fed on Normal Diet.XLSX

Ruirui Wang (1493308)
Hui Li (32376)
Xin Yang (104842)
Xinhe Xue (5538833)
Liman Deng (5538836)
Jian Shen (124641)
Menghui Zhang (147493)
Liping Zhao (147534)
Chenhong Zhang (147521)

July 2018

<p>Dysbiotic gut microbiota contributes to genetically obese phenotype in human. However, the effect...

Additional file 14: Table S9. of Bile acid is a significant host factor shaping the gut microbiome of diet-induced obese mice

Abstract

Extracted data

Additional file 14: Table S9. of Bile acid is a significant host factor shaping the gut microbiome of diet-induced obese mice

Abstract

Extracted data

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