Additional file 7: of An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench)

Additional file 7: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Table S2. Genes mapped in the chromosome which are involved in transcription factors, abiotic stress...

Additional file 7: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

All GO classifications and the significant GO terms of up- and down-regulated differentially express...

Additional file 8: of Evolutionary and expression analyses of soybean basic Leucine zipper transcription factor family

Man Zhang (466843)
Yanhui Liu (151413)
Hang Shi (120167)
Mingliang Guo (4877395)
Mengnan Chai (4877389)
Qing He (351975)
Maokai Yan (4877386)
Du Cao (4381888)
Lihua Zhao (566464)
Hanyang Cai (4877392)
Yuan Qin (260617)

February 2018

Table S6. The expression profiles (log2-based values) of the soybean bZIP genes after drought treatm...

Additional file 11: of An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench)

Adugna Woldesemayat (4715721)
Peter Van Heusden (3173346)
Bongani Ndimba (229738)
Alan Christoffels (16635)

December 2017

Description of drought responsive genes associated with different types of sorghum QTLs based on com...

Additional file 15: of An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench)

Adugna Woldesemayat (4715721)
Peter Van Heusden (3173346)
Bongani Ndimba (229738)
Alan Christoffels (16635)

December 2017

Functional annotation of DRGs identified by UniGene to genome Mapping. (XLSX 32 kb

An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench)

Adugna Abdi Woldesemayat
Van Heusden, Peter
Ndimba, Bongani K.
Christoffels, Alan

January 2018

Background: Drought is the most disastrous abiotic stress that severely affects agricultural product...

Additional file 4: of Validation of QTL mapping and transcriptome profiling for identification of candidate genes associated with nitrogen stress tolerance in sorghum

Malleswari Gelli (3441917)
Anji Konda (4242016)
Kan Liu (250462)
Chi Zhang (9857)
Thomas Clemente (3441911)
David Holding (3441914)
Ismail Dweikat (436864)

July 2017

The list of differentially expressed gene transcripts identified between RIL bulks with high and low...

Additional file 1: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Differentially expressed genes/transcripts in at least one sample with 2 fold change and at p-value ...

Additional file 7: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

An example of validation of SNPs between the sequenced accessions using KASP technology. (TIF 307 kb

Additional file 3: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Primer sequences used technical validation of expression data obtained from RNASeq. (XLSX 9 kb

Additional file 9: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Description of transcripts retrieved from sorghum bicolor genome v 1.0. (XLSX 7247 kb

Additional file 2: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Quantitative PCR plots of the selected expressed genes for technical validation. (TIF 114 kb

Additional file 10: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Primer sequences for selected variants to be used in building of integrated database. (XLSX 5540 kb

Additional file 8: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Description of the SNP position and SNP features on the sorghum chromosomes and validation of the bi...

Additional file 10: of Evolutionary and expression analyses of soybean basic Leucine zipper transcription factor family

Man Zhang (466843)
Yanhui Liu (151413)
Hang Shi (120167)
Mingliang Guo (4877395)
Mengnan Chai (4877389)
Qing He (351975)
Maokai Yan (4877386)
Du Cao (4381888)
Lihua Zhao (566464)
Hanyang Cai (4877392)
Yuan Qin (260617)

February 2018

Figure S2. Validation of drought treatment RNA-seq data. (A) RNA-seq data of downregulated genes aft...

Additional file 7: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Table S2. Genes mapped in the chromosome which are involved in transcription factors, abiotic stress...

Additional file 7: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

All GO classifications and the significant GO terms of up- and down-regulated differentially express...

Additional file 8: of Evolutionary and expression analyses of soybean basic Leucine zipper transcription factor family

Man Zhang (466843)
Yanhui Liu (151413)
Hang Shi (120167)
Mingliang Guo (4877395)
Mengnan Chai (4877389)
Qing He (351975)
Maokai Yan (4877386)
Du Cao (4381888)
Lihua Zhao (566464)
Hanyang Cai (4877392)
Yuan Qin (260617)

February 2018

Table S6. The expression profiles (log2-based values) of the soybean bZIP genes after drought treatm...

Additional file 11: of An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench)

Adugna Woldesemayat (4715721)
Peter Van Heusden (3173346)
Bongani Ndimba (229738)
Alan Christoffels (16635)

December 2017

Description of drought responsive genes associated with different types of sorghum QTLs based on com...

Additional file 15: of An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench)

Adugna Woldesemayat (4715721)
Peter Van Heusden (3173346)
Bongani Ndimba (229738)
Alan Christoffels (16635)

December 2017

Functional annotation of DRGs identified by UniGene to genome Mapping. (XLSX 32 kb

An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench)

Adugna Abdi Woldesemayat
Van Heusden, Peter
Ndimba, Bongani K.
Christoffels, Alan

January 2018

Background: Drought is the most disastrous abiotic stress that severely affects agricultural product...

Additional file 4: of Validation of QTL mapping and transcriptome profiling for identification of candidate genes associated with nitrogen stress tolerance in sorghum

Malleswari Gelli (3441917)
Anji Konda (4242016)
Kan Liu (250462)
Chi Zhang (9857)
Thomas Clemente (3441911)
David Holding (3441914)
Ismail Dweikat (436864)

July 2017

The list of differentially expressed gene transcripts identified between RIL bulks with high and low...

Additional file 1: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Differentially expressed genes/transcripts in at least one sample with 2 fold change and at p-value ...

Additional file 7: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

An example of validation of SNPs between the sequenced accessions using KASP technology. (TIF 307 kb

Additional file 3: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Primer sequences used technical validation of expression data obtained from RNASeq. (XLSX 9 kb

Additional file 9: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Description of transcripts retrieved from sorghum bicolor genome v 1.0. (XLSX 7247 kb

Additional file 2: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Quantitative PCR plots of the selected expressed genes for technical validation. (TIF 114 kb

Additional file 10: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Primer sequences for selected variants to be used in building of integrated database. (XLSX 5540 kb

Additional file 8: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Description of the SNP position and SNP features on the sorghum chromosomes and validation of the bi...

Additional file 10: of Evolutionary and expression analyses of soybean basic Leucine zipper transcription factor family

Man Zhang (466843)
Yanhui Liu (151413)
Hang Shi (120167)
Mingliang Guo (4877395)
Mengnan Chai (4877389)
Qing He (351975)
Maokai Yan (4877386)
Du Cao (4381888)
Lihua Zhao (566464)
Hanyang Cai (4877392)
Yuan Qin (260617)

February 2018

Figure S2. Validation of drought treatment RNA-seq data. (A) RNA-seq data of downregulated genes aft...

Additional file 7: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Table S2. Genes mapped in the chromosome which are involved in transcription factors, abiotic stress...

Additional file 7: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

All GO classifications and the significant GO terms of up- and down-regulated differentially express...

Additional file 8: of Evolutionary and expression analyses of soybean basic Leucine zipper transcription factor family

Man Zhang (466843)
Yanhui Liu (151413)
Hang Shi (120167)
Mingliang Guo (4877395)
Mengnan Chai (4877389)
Qing He (351975)
Maokai Yan (4877386)
Du Cao (4381888)
Lihua Zhao (566464)
Hanyang Cai (4877392)
Yuan Qin (260617)

February 2018

Table S6. The expression profiles (log2-based values) of the soybean bZIP genes after drought treatm...

Additional file 7: of An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench)

Abstract

Extracted data

Additional file 7: of An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench)

Abstract

Extracted data

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