Additional file 4 of Time course study of the response to LPS targeting the pig immune gene networks

Additional file 2: Table S2. of Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

T. Maroilley (4684477)
G. Lemonnier (2370415)
J. Lecardonnel (4684486)
D. EsquerrĂŠ (4684498)
Y. Ramayo-Caldas (4684483)
M. Mercat (4684492)
C. Rogel-Gaillard (4684480)
J. EstellĂŠ (4684495)

December 2017

Genes annotated by sense and/or antisense probes found associated with local or distant eQTL-SNPs. (...

An analysis of the intestinal immune response of pigs divergent in feed efficiency following an ex-vivo lipopolysaccharide challenge

Vigors, S

This data is additional data that is not appropriate to publish in the main manuscript which is desc...

Additional file 2: of Metabolomic signatures distinguish the impact of formula carbohydrates on disease outcome in a preterm piglet model of NEC

Lee Call (5424620)
Barbara Stoll (631755)
Berthe Oosterloo (631754)
Nadim Ajami (3526169)
Fariha Sheikh (752802)
Anja Wittke (631761)
Rosaline Waworuntu (5424617)
Brian Berg (631760)
Joseph Petrosino (39790)
Oluyinka Olutoye (5424611)
Douglas Burrin (5424614)

June 2018

Gene expression of major inflammatory cytokines. Samples from distal ileum tissue from a subset of t...

Additional file 6 of Time course study of the response to LPS targeting the pig immune gene networks

Elena Terenina (3459731)
ValĂŠrie Sautron (3459737)
Caroline Ydier (4715796)
Darya Bazovkina (4715799)
AmĂŠlie Sevin-Pujol (4715805)
Laure Gress (3459734)
Yannick Lippi (3459740)
Claire Naylies (480828)
Yvon Billon (522346)
Laurence Liaubet (90101)
Pierre Mormede (4715802)
Nathalie Villa-Vialaneix (131484)

December 2017

Biological functions enriched by differentially expressed genes in list (List3) (n=30). Categories: ...

Additional file 4: of Effects of divergent selection upon adrenocortical activity on immune traits in pig

Julie HervĂŠ (6423911)
Elena Terenina (3459731)
Karine HaurognĂŠ (6423914)
Elodie Bacou (6423842)
Elizaveta Kulikova (6423845)
Marie Allard (627433)
Yvon Billon (522346)
Jean-Marie Bach (627439)
Pierre MormĂ¨de (3459728)
Blandine Lieubeau (778193)

March 2019

Table S2. List of genes whose expression was significantly modulated after LPS injection compared to...

Additional file 6: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

Nicolaas Van Renne (4967131)
Ruifang Wei (4625599)
Nathalie Pochet (150518)
Hans Nauwynck (533091)

November 2018

PorSignDB performance in lymph nodes of PMWS pigs VS healthy pigs. Figure displays enriched PorSignD...

Additional file 4: of Deciphering transcriptome profiles of peripheral blood mononuclear cells in response to PRRSV vaccination in pigs

Md Islam (257385)
Christine Große-Brinkhaus (412998)
Maren Pröll (707145)
Muhammad Uddin (3439820)
Sharmin Rony (3439817)
Dawit Tesfaye (79384)
Ernst Tholen (79379)
Michael Hölker (79376)
Karl Schellander (79383)
Christiane Neuhoff (412997)

August 2016

List of DEGs in PBMCs of pigs at 24 hpv of PRRSV vaccination in pigs compared to control. (XLSX 226 ...

Additional file 5: of Deciphering transcriptome profiles of peripheral blood mononuclear cells in response to PRRSV vaccination in pigs

Md Islam (257385)
Christine Große-Brinkhaus (412998)
Maren Pröll (707145)
Muhammad Uddin (3439820)
Sharmin Rony (3439817)
Dawit Tesfaye (79384)
Ernst Tholen (79379)
Michael Hölker (79376)
Karl Schellander (79383)
Christiane Neuhoff (412997)

August 2016

List of DEGs in PBMCs of pigs at 72 hpv of PRRSV vaccination in pigs compared to control. (XLSX 41 k...

Additional file 1: of Activation of innate immune genes in caprine blood leukocytes after systemic endotoxin challenge

Ăyvind Salvesen (3399374)
Malin Reiten (3399326)
Peter Heegaard (3399332)
Michael Tranulis (3399329)
Arild Espenes (279377)
Kerstin Skovgaard (429097)
Cecilie Ersdal (3399335)

October 2016

Gene name, gene abbreviations and primer sequences used in the real time qPCR analysis. For previous...

Additional file 4 of Time course of the response to ACTH in pig: biological and transcriptomic study

Valérie Sautron (3459743)
Elena Terenina (3459731)
Laure Gress (3459734)
Yannick Lippi (3459740)
Yvon Billon (522346)
Catherine Larzul (3459725)
Laurence Liaubet (90101)
Nathalie Villa-Vialaneix (131484)
Pierre Mormède (90103)

November 2015

Complete list of enriched GO (Biological process (BP), Molecular function (MF) and Cellular Componen...

Additional file 5: of Comparison of splenocyte microRNA expression profiles of pigs during acute and chronic toxoplasmosis

Zhaofeng Hou (4371754)
Dandan Liu (303719)
Shijie Su (4371757)
Lele Wang (542468)
Zhenxing Zhao (6279890)
Yifei Ma (206062)
Qiaoqiao Li (355362)
Chuanli Jia (4371751)
Jinjun Xu (777049)
Yonghua Zhou (151227)
Jianping Tao (124288)

January 2019

Table S5. KEGG pathways of target genes of DEMs between the infected and control groups at 10, 25 an...

Transcriptome analysis of porcine PBMCs after in vitro stimulation by LPS or PMA/ionomycin using an expression array targeting the pig immune response

Gao, Yu
Flori, Laurence
Lecardonnel, Jérôme
Esquerre, Diane
Hu, Zhi-Liang
Teillaud, Angélique
Lemonnier, Gaëtan
Lefèvre, Francois
Oswald, Isabelle P.
Gaillard, Claire

January 2010

Background: Designing sustainable animal production systems that better balance productivity and res...

Structural and functional annotation of the porcine immunome

Dawson, Harry D
Loveland, Jane E
Pascal, Géraldine
Gilbert, James G R
Uenishi, Hirohide
Mann, Katherine M
Sang, Yongming
Zhang, Jie
Carvalho-Silva, Denise
Hunt, Toby
Hardy, Matthew
Hu, Zhiliang
Zhao, Shu-Hong
Anselmo, Anna
Shinkai, Hiroki
Chen, Celine
Badaoui, Bouabid
Berman, Daniel
Amid, Clara
Kay, Mike
Lloyd, David
Snow, Catherine
Morozumi, Takeya
Cheng, Ryan Pei-Yen
Bystrom, Megan
Kapetanovic, Ronan
Schwartz, John C
Kataria, Ranjit
Astley, Matthew
Fritz, Eric
Steward, Charles
Thomas, Mark
Wilming, Laurens
Toki, Daisuke
Archibald, Alan L
Bed'Hom, Bertrand
Beraldi, Dario
Huang, Ting-Hua
Ait-Ali, Tahar
Blecha, Frank
Botti, Sara
Freeman, Tom C
Giuffra, Elisabetta
Hume, David A
Lunney, Joan K
Murtaugh, Michael P
Reecy, James M
Harrow, Jennifer L

January 2013

Background: The domestic pig is known as an excellent model for human immunology and the two species...

Additional file 4: of Role of AMPK signalling pathway during compensatory growth in pigs

Maria Ballester (103767)
Marcel Amills (168991)
Olga González-Rodríguez (4349749)
Tainã Cardoso (3585575)
Mariam Pascual (5755100)
Rayner González-Prendes (4349755)
Núria Panella-Riera (5755103)
Isabel Díaz (2698609)
Joan Tibau (3779230)
Raquel Quintanilla (168993)

September 2018

Table S4. List of canonical pathways identified at the list of 86 genes differentially expressed (Pa...

Time course study of the response to LPS targeting the pig immune gene networks

Terenina, Elena
Sautron, Valérie
Ydier, Caroline
Bazovkina, Darya
Sevin-Pujol, Amélie
Gress, Laure
Lippi, Yannick
Naylies, Claire
Billon, Yvon
Liaubet, Laurence
Mormède, Pierre
Villa-Vialaneix, Nathalie

January 2017

Background: Stress is a generic term used to describe non-specific responses of the body to all kind...

Additional file 2: Table S2. of Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

T. Maroilley (4684477)
G. Lemonnier (2370415)
J. Lecardonnel (4684486)
D. EsquerrĂŠ (4684498)
Y. Ramayo-Caldas (4684483)
M. Mercat (4684492)
C. Rogel-Gaillard (4684480)
J. EstellĂŠ (4684495)

December 2017

Genes annotated by sense and/or antisense probes found associated with local or distant eQTL-SNPs. (...

An analysis of the intestinal immune response of pigs divergent in feed efficiency following an ex-vivo lipopolysaccharide challenge

Vigors, S

This data is additional data that is not appropriate to publish in the main manuscript which is desc...

Additional file 2: of Metabolomic signatures distinguish the impact of formula carbohydrates on disease outcome in a preterm piglet model of NEC

Lee Call (5424620)
Barbara Stoll (631755)
Berthe Oosterloo (631754)
Nadim Ajami (3526169)
Fariha Sheikh (752802)
Anja Wittke (631761)
Rosaline Waworuntu (5424617)
Brian Berg (631760)
Joseph Petrosino (39790)
Oluyinka Olutoye (5424611)
Douglas Burrin (5424614)

June 2018

Gene expression of major inflammatory cytokines. Samples from distal ileum tissue from a subset of t...

Additional file 6 of Time course study of the response to LPS targeting the pig immune gene networks

Elena Terenina (3459731)
ValĂŠrie Sautron (3459737)
Caroline Ydier (4715796)
Darya Bazovkina (4715799)
AmĂŠlie Sevin-Pujol (4715805)
Laure Gress (3459734)
Yannick Lippi (3459740)
Claire Naylies (480828)
Yvon Billon (522346)
Laurence Liaubet (90101)
Pierre Mormede (4715802)
Nathalie Villa-Vialaneix (131484)

December 2017

Biological functions enriched by differentially expressed genes in list (List3) (n=30). Categories: ...

Additional file 4: of Effects of divergent selection upon adrenocortical activity on immune traits in pig

Julie HervĂŠ (6423911)
Elena Terenina (3459731)
Karine HaurognĂŠ (6423914)
Elodie Bacou (6423842)
Elizaveta Kulikova (6423845)
Marie Allard (627433)
Yvon Billon (522346)
Jean-Marie Bach (627439)
Pierre MormĂ¨de (3459728)
Blandine Lieubeau (778193)

March 2019

Table S2. List of genes whose expression was significantly modulated after LPS injection compared to...

Additional file 6: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

Nicolaas Van Renne (4967131)
Ruifang Wei (4625599)
Nathalie Pochet (150518)
Hans Nauwynck (533091)

November 2018

PorSignDB performance in lymph nodes of PMWS pigs VS healthy pigs. Figure displays enriched PorSignD...

Additional file 4: of Deciphering transcriptome profiles of peripheral blood mononuclear cells in response to PRRSV vaccination in pigs

Md Islam (257385)
Christine Große-Brinkhaus (412998)
Maren Pröll (707145)
Muhammad Uddin (3439820)
Sharmin Rony (3439817)
Dawit Tesfaye (79384)
Ernst Tholen (79379)
Michael Hölker (79376)
Karl Schellander (79383)
Christiane Neuhoff (412997)

August 2016

List of DEGs in PBMCs of pigs at 24 hpv of PRRSV vaccination in pigs compared to control. (XLSX 226 ...

Additional file 5: of Deciphering transcriptome profiles of peripheral blood mononuclear cells in response to PRRSV vaccination in pigs

Md Islam (257385)
Christine Große-Brinkhaus (412998)
Maren Pröll (707145)
Muhammad Uddin (3439820)
Sharmin Rony (3439817)
Dawit Tesfaye (79384)
Ernst Tholen (79379)
Michael Hölker (79376)
Karl Schellander (79383)
Christiane Neuhoff (412997)

August 2016

List of DEGs in PBMCs of pigs at 72 hpv of PRRSV vaccination in pigs compared to control. (XLSX 41 k...

Additional file 1: of Activation of innate immune genes in caprine blood leukocytes after systemic endotoxin challenge

Ăyvind Salvesen (3399374)
Malin Reiten (3399326)
Peter Heegaard (3399332)
Michael Tranulis (3399329)
Arild Espenes (279377)
Kerstin Skovgaard (429097)
Cecilie Ersdal (3399335)

October 2016

Gene name, gene abbreviations and primer sequences used in the real time qPCR analysis. For previous...

Additional file 4 of Time course of the response to ACTH in pig: biological and transcriptomic study

Valérie Sautron (3459743)
Elena Terenina (3459731)
Laure Gress (3459734)
Yannick Lippi (3459740)
Yvon Billon (522346)
Catherine Larzul (3459725)
Laurence Liaubet (90101)
Nathalie Villa-Vialaneix (131484)
Pierre Mormède (90103)

November 2015

Complete list of enriched GO (Biological process (BP), Molecular function (MF) and Cellular Componen...

Additional file 5: of Comparison of splenocyte microRNA expression profiles of pigs during acute and chronic toxoplasmosis

Zhaofeng Hou (4371754)
Dandan Liu (303719)
Shijie Su (4371757)
Lele Wang (542468)
Zhenxing Zhao (6279890)
Yifei Ma (206062)
Qiaoqiao Li (355362)
Chuanli Jia (4371751)
Jinjun Xu (777049)
Yonghua Zhou (151227)
Jianping Tao (124288)

January 2019

Table S5. KEGG pathways of target genes of DEMs between the infected and control groups at 10, 25 an...

Transcriptome analysis of porcine PBMCs after in vitro stimulation by LPS or PMA/ionomycin using an expression array targeting the pig immune response

Gao, Yu
Flori, Laurence
Lecardonnel, Jérôme
Esquerre, Diane
Hu, Zhi-Liang
Teillaud, Angélique
Lemonnier, Gaëtan
Lefèvre, Francois
Oswald, Isabelle P.
Gaillard, Claire

January 2010

Background: Designing sustainable animal production systems that better balance productivity and res...

Structural and functional annotation of the porcine immunome

Dawson, Harry D
Loveland, Jane E
Pascal, Géraldine
Gilbert, James G R
Uenishi, Hirohide
Mann, Katherine M
Sang, Yongming
Zhang, Jie
Carvalho-Silva, Denise
Hunt, Toby
Hardy, Matthew
Hu, Zhiliang
Zhao, Shu-Hong
Anselmo, Anna
Shinkai, Hiroki
Chen, Celine
Badaoui, Bouabid
Berman, Daniel
Amid, Clara
Kay, Mike
Lloyd, David
Snow, Catherine
Morozumi, Takeya
Cheng, Ryan Pei-Yen
Bystrom, Megan
Kapetanovic, Ronan
Schwartz, John C
Kataria, Ranjit
Astley, Matthew
Fritz, Eric
Steward, Charles
Thomas, Mark
Wilming, Laurens
Toki, Daisuke
Archibald, Alan L
Bed'Hom, Bertrand
Beraldi, Dario
Huang, Ting-Hua
Ait-Ali, Tahar
Blecha, Frank
Botti, Sara
Freeman, Tom C
Giuffra, Elisabetta
Hume, David A
Lunney, Joan K
Murtaugh, Michael P
Reecy, James M
Harrow, Jennifer L

January 2013

Background: The domestic pig is known as an excellent model for human immunology and the two species...

Additional file 4: of Role of AMPK signalling pathway during compensatory growth in pigs

Maria Ballester (103767)
Marcel Amills (168991)
Olga González-Rodríguez (4349749)
Tainã Cardoso (3585575)
Mariam Pascual (5755100)
Rayner González-Prendes (4349755)
Núria Panella-Riera (5755103)
Isabel Díaz (2698609)
Joan Tibau (3779230)
Raquel Quintanilla (168993)

September 2018

Table S4. List of canonical pathways identified at the list of 86 genes differentially expressed (Pa...

Time course study of the response to LPS targeting the pig immune gene networks

Terenina, Elena
Sautron, Valérie
Ydier, Caroline
Bazovkina, Darya
Sevin-Pujol, Amélie
Gress, Laure
Lippi, Yannick
Naylies, Claire
Billon, Yvon
Liaubet, Laurence
Mormède, Pierre
Villa-Vialaneix, Nathalie

January 2017

Background: Stress is a generic term used to describe non-specific responses of the body to all kind...

Additional file 2: Table S2. of Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

T. Maroilley (4684477)
G. Lemonnier (2370415)
J. Lecardonnel (4684486)
D. EsquerrĂŠ (4684498)
Y. Ramayo-Caldas (4684483)
M. Mercat (4684492)
C. Rogel-Gaillard (4684480)
J. EstellĂŠ (4684495)

December 2017

Genes annotated by sense and/or antisense probes found associated with local or distant eQTL-SNPs. (...

An analysis of the intestinal immune response of pigs divergent in feed efficiency following an ex-vivo lipopolysaccharide challenge

Vigors, S

This data is additional data that is not appropriate to publish in the main manuscript which is desc...

Additional file 2: of Metabolomic signatures distinguish the impact of formula carbohydrates on disease outcome in a preterm piglet model of NEC

Lee Call (5424620)
Barbara Stoll (631755)
Berthe Oosterloo (631754)
Nadim Ajami (3526169)
Fariha Sheikh (752802)
Anja Wittke (631761)
Rosaline Waworuntu (5424617)
Brian Berg (631760)
Joseph Petrosino (39790)
Oluyinka Olutoye (5424611)
Douglas Burrin (5424614)

June 2018

Gene expression of major inflammatory cytokines. Samples from distal ileum tissue from a subset of t...

Additional file 4 of Time course study of the response to LPS targeting the pig immune gene networks

Abstract

Extracted data

Additional file 4 of Time course study of the response to LPS targeting the pig immune gene networks

Abstract

Extracted data

Related items

Related items