Additional file 9: Table S5. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Additional file 1: of Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle

Kethusegile Raphaka (3858487)
Oswald Matika (561285)
Enrique Sรกnchez-Molano (3504275)
Raphael Mrode (3201009)
Mike Coffey (3207387)
Valentina Riggio (3291318)
Elizabeth Glass (14089)
John Woolliams (3525701)
Stephen Bishop (2150092)
Georgios Banos (357423)

March 2017

Multi-dimensional scaling (Principal Component) analysis of an identity by state matrix of 804 bulls...

Table_2_Whole Genome Sequencing for Determining the Source of Mycobacterium bovis Infections in Livestock Herds and Wildlife in New Zealand.XLSX

Marian Price-Carter (2412403)
Rudiger Brauning (47247)
Geoffrey W. de Lisle (624792)
Paul Livingstone (3755227)
Mark Neill (3755221)
Jane Sinclair (2277292)
Brent Paterson (3755230)
Gillian Atkinson (5906450)
Garry Knowles (5906453)
Kevin Crews (5906456)
Joseph Crispell (3755236)
Rowland Kao (330135)
Suelee Robbe-Austerman (90829)
Tod Stuber (846459)
Julian Parkhill (30393)
James Wood (325505)
Simon Harris (137272)
Desmond M. Collins (5906459)

October 2018

The ability to DNA fingerprint Mycobacterium bovis isolates helped to define the role of wildlife in...

Whole Genome Sequence Analysis of Mycobacterium bovis Cattle Isolates, Algeria

Tazerart, Fatah
Saad, Jamal
Sahraoui, Naima
Yala, Djamel
Niar, Abdellatif
Drancourt, Michel

July 2021

International audienceMycobacterium bovis (M. bovis), a Mycobacterium tuberculosis complex species r...

Additional file 8: Table S4. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

List of the over represented genes found in the 23 Uruguayan M. bovis strains. (ODS 18 kb

Additional file 1: Figure S1. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

Sequencing and genome annotation statistics for the 23 Uruguayan strains of M. bovis. (PDF 115 kb

Additional file 13: Table S8. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

Details on the distinctive characteristics defining each of the three groups described in this study...

Additional file 3: Figure S2. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

List of tRNAs and corresponding codons in the Uruguayan genomes under study. (PDF 66 kb

Additional file 7: Figure S4a. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

Validation of in silico RD typing with PCR on 21 of the Uruguayan M. bovis strains. Figure S4b. Alig...

Additional file 12: Figure S5. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

Bar plots displaying the number of genes affected per strain that are associated to the GO terms car...

Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre
Pablo Fresia
Gonzalo Greif
Gregorio Iraola
Miguel Castro-Ramos
Arturo Juambeltz
Álvaro Nuñez
Hugo Naya
Carlos Robello
Luisa Berná

January 2018

Abstract Background Bovine tuberculosis (bTB) poses serious risks to animal welfare and economy, as ...

Draft genome sequences of two Mycobacterium bovis strains isolated from beef cattle in Paraguay

Sanabria, Lidia
Lagrave, Lorena
Nishibe, Christiane
Ribas, Augusto C.A.
Zumárraga, Martín José
Almeida, Nalvo F.
Araújo, Flábio R.

July 2017

This work reports the draft genome sequences of the Mycobacterium bovis strains M1009 and M1010, iso...

Table_1_Whole Genome Sequencing of Mycobacterium bovis Isolated From Livestock in the United States, 1989–2018.xlsx

Kathy Orloski (5908496)
Suelee Robbe-Austerman (90829)
Tod Stuber (846459)
Bill Hench (5908499)
Mark Schoenbaum (5908502)

October 2018

The United States official bovine tuberculosis (bTB) eradication program has utilized genotyping for...

Whole Genome Sequence Analysis of <i>Mycobacterium bovis</i> Cattle Isolates, Algeria

Fatah Tazerart
Jamal Saad
Naima Sahraoui
Djamel Yala
Abdellatif Niar
Michel Drancourt

June 2021

Mycobacterium bovis (M. bovis), a Mycobacterium tuberculosis complex species responsible for tubercu...

Data_Sheet_2_Whole Genome Sequencing of Mycobacterium bovis Isolated From Livestock in the United States, 1989–2018.xlsx

Kathy Orloski (5908496)
Suelee Robbe-Austerman (90829)
Tod Stuber (846459)
Bill Hench (5908499)
Mark Schoenbaum (5908502)

October 2018

The United States official bovine tuberculosis (bTB) eradication program has utilized genotyping for...

Table_1_Whole Genome Sequencing for Determining the Source of Mycobacterium bovis Infections in Livestock Herds and Wildlife in New Zealand.XLSX

Marian Price-Carter (2412403)
Rudiger Brauning (47247)
Geoffrey W. de Lisle (624792)
Paul Livingstone (3755227)
Mark Neill (3755221)
Jane Sinclair (2277292)
Brent Paterson (3755230)
Gillian Atkinson (5906450)
Garry Knowles (5906453)
Kevin Crews (5906456)
Joseph Crispell (3755236)
Rowland Kao (330135)
Suelee Robbe-Austerman (90829)
Tod Stuber (846459)
Julian Parkhill (30393)
James Wood (325505)
Simon Harris (137272)
Desmond M. Collins (5906459)

October 2018

The ability to DNA fingerprint Mycobacterium bovis isolates helped to define the role of wildlife in...

Additional file 1: of Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle

Kethusegile Raphaka (3858487)
Oswald Matika (561285)
Enrique Sรกnchez-Molano (3504275)
Raphael Mrode (3201009)
Mike Coffey (3207387)
Valentina Riggio (3291318)
Elizabeth Glass (14089)
John Woolliams (3525701)
Stephen Bishop (2150092)
Georgios Banos (357423)

March 2017

Multi-dimensional scaling (Principal Component) analysis of an identity by state matrix of 804 bulls...

Table_2_Whole Genome Sequencing for Determining the Source of Mycobacterium bovis Infections in Livestock Herds and Wildlife in New Zealand.XLSX

Marian Price-Carter (2412403)
Rudiger Brauning (47247)
Geoffrey W. de Lisle (624792)
Paul Livingstone (3755227)
Mark Neill (3755221)
Jane Sinclair (2277292)
Brent Paterson (3755230)
Gillian Atkinson (5906450)
Garry Knowles (5906453)
Kevin Crews (5906456)
Joseph Crispell (3755236)
Rowland Kao (330135)
Suelee Robbe-Austerman (90829)
Tod Stuber (846459)
Julian Parkhill (30393)
James Wood (325505)
Simon Harris (137272)
Desmond M. Collins (5906459)

October 2018

The ability to DNA fingerprint Mycobacterium bovis isolates helped to define the role of wildlife in...

Whole Genome Sequence Analysis of Mycobacterium bovis Cattle Isolates, Algeria

Tazerart, Fatah
Saad, Jamal
Sahraoui, Naima
Yala, Djamel
Niar, Abdellatif
Drancourt, Michel

July 2021

International audienceMycobacterium bovis (M. bovis), a Mycobacterium tuberculosis complex species r...

Additional file 8: Table S4. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

List of the over represented genes found in the 23 Uruguayan M. bovis strains. (ODS 18 kb

Additional file 1: Figure S1. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

Sequencing and genome annotation statistics for the 23 Uruguayan strains of M. bovis. (PDF 115 kb

Additional file 13: Table S8. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

Details on the distinctive characteristics defining each of the three groups described in this study...

Additional file 3: Figure S2. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

List of tRNAs and corresponding codons in the Uruguayan genomes under study. (PDF 66 kb

Additional file 7: Figure S4a. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

Validation of in silico RD typing with PCR on 21 of the Uruguayan M. bovis strains. Figure S4b. Alig...

Additional file 12: Figure S5. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

Bar plots displaying the number of genes affected per strain that are associated to the GO terms car...

Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre
Pablo Fresia
Gonzalo Greif
Gregorio Iraola
Miguel Castro-Ramos
Arturo Juambeltz
Álvaro Nuñez
Hugo Naya
Carlos Robello
Luisa Berná

January 2018

Abstract Background Bovine tuberculosis (bTB) poses serious risks to animal welfare and economy, as ...

Draft genome sequences of two Mycobacterium bovis strains isolated from beef cattle in Paraguay

Sanabria, Lidia
Lagrave, Lorena
Nishibe, Christiane
Ribas, Augusto C.A.
Zumárraga, Martín José
Almeida, Nalvo F.
Araújo, Flábio R.

July 2017

This work reports the draft genome sequences of the Mycobacterium bovis strains M1009 and M1010, iso...

Table_1_Whole Genome Sequencing of Mycobacterium bovis Isolated From Livestock in the United States, 1989–2018.xlsx

Kathy Orloski (5908496)
Suelee Robbe-Austerman (90829)
Tod Stuber (846459)
Bill Hench (5908499)
Mark Schoenbaum (5908502)

October 2018

The United States official bovine tuberculosis (bTB) eradication program has utilized genotyping for...

Whole Genome Sequence Analysis of <i>Mycobacterium bovis</i> Cattle Isolates, Algeria

Fatah Tazerart
Jamal Saad
Naima Sahraoui
Djamel Yala
Abdellatif Niar
Michel Drancourt

June 2021

Mycobacterium bovis (M. bovis), a Mycobacterium tuberculosis complex species responsible for tubercu...

Data_Sheet_2_Whole Genome Sequencing of Mycobacterium bovis Isolated From Livestock in the United States, 1989–2018.xlsx

Kathy Orloski (5908496)
Suelee Robbe-Austerman (90829)
Tod Stuber (846459)
Bill Hench (5908499)
Mark Schoenbaum (5908502)

October 2018

The United States official bovine tuberculosis (bTB) eradication program has utilized genotyping for...

Table_1_Whole Genome Sequencing for Determining the Source of Mycobacterium bovis Infections in Livestock Herds and Wildlife in New Zealand.XLSX

Marian Price-Carter (2412403)
Rudiger Brauning (47247)
Geoffrey W. de Lisle (624792)
Paul Livingstone (3755227)
Mark Neill (3755221)
Jane Sinclair (2277292)
Brent Paterson (3755230)
Gillian Atkinson (5906450)
Garry Knowles (5906453)
Kevin Crews (5906456)
Joseph Crispell (3755236)
Rowland Kao (330135)
Suelee Robbe-Austerman (90829)
Tod Stuber (846459)
Julian Parkhill (30393)
James Wood (325505)
Simon Harris (137272)
Desmond M. Collins (5906459)

October 2018

The ability to DNA fingerprint Mycobacterium bovis isolates helped to define the role of wildlife in...

Additional file 1: of Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle

Kethusegile Raphaka (3858487)
Oswald Matika (561285)
Enrique Sรกnchez-Molano (3504275)
Raphael Mrode (3201009)
Mike Coffey (3207387)
Valentina Riggio (3291318)
Elizabeth Glass (14089)
John Woolliams (3525701)
Stephen Bishop (2150092)
Georgios Banos (357423)

March 2017

Multi-dimensional scaling (Principal Component) analysis of an identity by state matrix of 804 bulls...

Table_2_Whole Genome Sequencing for Determining the Source of Mycobacterium bovis Infections in Livestock Herds and Wildlife in New Zealand.XLSX

Marian Price-Carter (2412403)
Rudiger Brauning (47247)
Geoffrey W. de Lisle (624792)
Paul Livingstone (3755227)
Mark Neill (3755221)
Jane Sinclair (2277292)
Brent Paterson (3755230)
Gillian Atkinson (5906450)
Garry Knowles (5906453)
Kevin Crews (5906456)
Joseph Crispell (3755236)
Rowland Kao (330135)
Suelee Robbe-Austerman (90829)
Tod Stuber (846459)
Julian Parkhill (30393)
James Wood (325505)
Simon Harris (137272)
Desmond M. Collins (5906459)

October 2018

The ability to DNA fingerprint Mycobacterium bovis isolates helped to define the role of wildlife in...

Whole Genome Sequence Analysis of Mycobacterium bovis Cattle Isolates, Algeria

Tazerart, Fatah
Saad, Jamal
Sahraoui, Naima
Yala, Djamel
Niar, Abdellatif
Drancourt, Michel

July 2021

International audienceMycobacterium bovis (M. bovis), a Mycobacterium tuberculosis complex species r...

Additional file 9: Table S5. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Abstract

Extracted data

Additional file 9: Table S5. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Abstract

Extracted data

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