Additional file 6: Figure S5. of Transcript profiling of sucrose synthase genes involved in sucrose metabolism among four carrot (Daucus carota L.) cultivars reveals distinct patterns

Additional file 2: of Sucrose metabolism in developing oil-rich tubers of Cyperus esculentus: comparative transcriptome analysis

Zhenle Yang (5556257)
Dantong Liu (4922356)
Hongying Ji (5556260)

July 2018

Figure S1. Relative gene expression levels for each invertase isoform in diverse plant storage tissu...

Additional file 3: of Sucrose metabolism in developing oil-rich tubers of Cyperus esculentus: comparative transcriptome analysis

Zhenle Yang (5556257)
Dantong Liu (4922356)
Hongying Ji (5556260)

July 2018

Figure S2. Relative gene expression levels for each isoform of hexose phosphorylation in diverse pla...

Additional file 3: of Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

Miyako Kodama (5614823)
Henrik Brinch-Pedersen (1759138)
Shrikant Sharma (1819531)
Inger Holme (3600365)
Bjarne Joernsgaard (3905599)
Tsaneta Dzhanfezova (3905605)
Daniel Amby (3528977)
Filipe Vieira (4908736)
Shanlin Liu (2851853)
M Gilbert (5947919)

November 2018

Anthocyanin content for outer, middle and inner tissues of two CH5544 samples obtained at 10Â weeks ...

Additional file 2: Figure S2. of Transcript profiling of sucrose synthase genes involved in sucrose metabolism among four carrot (Daucus carota L.) cultivars reveals distinct patterns

Yan-Jun Liu (197444)
Guang-Long Wang (479663)
Jing Ma (24574)
Zhi-Sheng Xu (152820)
Feng Wang (44414)
Ai-Sheng Xiong (144859)

January 2018

Nucleotide acid and deduced amino acid sequences of DcSus2 from carrot (DOC 33 kb

Additional file 3: Figure S3. of Transcript profiling of sucrose synthase genes involved in sucrose metabolism among four carrot (Daucus carota L.) cultivars reveals distinct patterns

Yan-Jun Liu (197444)
Guang-Long Wang (479663)
Jing Ma (24574)
Zhi-Sheng Xu (152820)
Feng Wang (44414)
Ai-Sheng Xiong (144859)

January 2018

Nucleotide acid and deduced amino acid sequences of DcSus3 from carrot (DOC 34 kb

Transcript profiling of sucrose synthase genes involved in sucrose metabolism among four carrot (Daucus carota L.) cultivars reveals distinct patterns

Yan-Jun Liu
Guang-Long Wang
Jing Ma
Zhi-Sheng Xu
Feng Wang
Ai-Sheng Xiong

January 2018

Abstract Background Carrot which contains lots of nutrients has a large demand around the world. The...

Additional file 9: Figure S4. of Association of variation in the sugarcane transcriptome with sugar content

Prathima Thirugnanasambandam (4041584)
Nam Hoang (4041575)
Agnelo Furtado (1823)
Frederick Botha (4616092)
Robert Henry (108785)

November 2017

Blast2GO and KEGG Mapping for DEGs in the SOGI-DGE with respect to starch and sucrose metabolism. Fi...

Additional file 4: of Sucrose metabolism in developing oil-rich tubers of Cyperus esculentus: comparative transcriptome analysis

Zhenle Yang (5556257)
Dantong Liu (4922356)
Hongying Ji (5556260)

July 2018

Figure S3. Relative gene expression levels for each isoform of sucrose synthesis pathways in diverse...

Additional file 5: of Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

Miyako Kodama (5614823)
Henrik Brinch-Pedersen (1759138)
Shrikant Sharma (1819531)
Inger Holme (3600365)
Bjarne Joernsgaard (3905599)
Tsaneta Dzhanfezova (3905605)
Daniel Amby (3528977)
Filipe Vieira (4908736)
Shanlin Liu (2851853)
M Gilbert (5947919)

November 2018

The results from the differentially expression analyses using callus (Additional file 5.1), using ca...

Additional file 2: of Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane

Prathima Thirugnanasambandam (4041584)
Patrick Mason (4041587)
Nam Hoang (4041575)
Agnelo Furtado (1823)
Frederik Botha (4041572)
Robert Henry (108785)

April 2019

Figure S1. Identification and sequence retrieval of SuSy transcripts from the SUGIT transcriptome re...

Tissue-specific expression of two genes for sucrose synthase in carrot (Daucus carota L.)

Sturm, Arnd
Lienhard, Susanne
Schatt, Stephan
Hardegger, Markus

June 2018

Sucrose synthase, which cleaves sucrose in the presence of uridine diphosphate (UDP) into UDP-glucos...

Additional file 6: of Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

Miyako Kodama (5614823)
Henrik Brinch-Pedersen (1759138)
Shrikant Sharma (1819531)
Inger Holme (3600365)
Bjarne Joernsgaard (3905599)
Tsaneta Dzhanfezova (3905605)
Daniel Amby (3528977)
Filipe Vieira (4908736)
Shanlin Liu (2851853)
M Gilbert (5947919)

November 2018

This file contains the results from differential expression analyses using DESeq2, EdgeR (glm model)...

Additional file 7: of Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

Miyako Kodama (5614823)
Henrik Brinch-Pedersen (1759138)
Shrikant Sharma (1819531)
Inger Holme (3600365)
Bjarne Joernsgaard (3905599)
Tsaneta Dzhanfezova (3905605)
Daniel Amby (3528977)
Filipe Vieira (4908736)
Shanlin Liu (2851853)
M Gilbert (5947919)

November 2018

The results from differential expression analyses for NAC and bZIP genes using DESeq2, EdgeR (glm mo...

Additional file 1: of Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane

Prathima Thirugnanasambandam (4041584)
Patrick Mason (4041587)
Nam Hoang (4041575)
Agnelo Furtado (1823)
Frederik Botha (4041572)
Robert Henry (108785)

April 2019

Table S1. Details of RNA-Seq reads from various tissues used for the SuSy expression study. Table S2...

Additional file 2: of Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

Miyako Kodama (5614823)
Henrik Brinch-Pedersen (1759138)
Shrikant Sharma (1819531)
Inger Holme (3600365)
Bjarne Joernsgaard (3905599)
Tsaneta Dzhanfezova (3905605)
Daniel Amby (3528977)
Filipe Vieira (4908736)
Shanlin Liu (2851853)
M Gilbert (5947919)

November 2018

Sequence and primer properties used to analyses 11 candidate genes and GAPDH (Additional file 2.1), ...

Additional file 2: of Sucrose metabolism in developing oil-rich tubers of Cyperus esculentus: comparative transcriptome analysis

Zhenle Yang (5556257)
Dantong Liu (4922356)
Hongying Ji (5556260)

July 2018

Figure S1. Relative gene expression levels for each invertase isoform in diverse plant storage tissu...

Additional file 3: of Sucrose metabolism in developing oil-rich tubers of Cyperus esculentus: comparative transcriptome analysis

Zhenle Yang (5556257)
Dantong Liu (4922356)
Hongying Ji (5556260)

July 2018

Figure S2. Relative gene expression levels for each isoform of hexose phosphorylation in diverse pla...

Additional file 3: of Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

Miyako Kodama (5614823)
Henrik Brinch-Pedersen (1759138)
Shrikant Sharma (1819531)
Inger Holme (3600365)
Bjarne Joernsgaard (3905599)
Tsaneta Dzhanfezova (3905605)
Daniel Amby (3528977)
Filipe Vieira (4908736)
Shanlin Liu (2851853)
M Gilbert (5947919)

November 2018

Anthocyanin content for outer, middle and inner tissues of two CH5544 samples obtained at 10Â weeks ...

Additional file 2: Figure S2. of Transcript profiling of sucrose synthase genes involved in sucrose metabolism among four carrot (Daucus carota L.) cultivars reveals distinct patterns

Yan-Jun Liu (197444)
Guang-Long Wang (479663)
Jing Ma (24574)
Zhi-Sheng Xu (152820)
Feng Wang (44414)
Ai-Sheng Xiong (144859)

January 2018

Nucleotide acid and deduced amino acid sequences of DcSus2 from carrot (DOC 33 kb

Additional file 3: Figure S3. of Transcript profiling of sucrose synthase genes involved in sucrose metabolism among four carrot (Daucus carota L.) cultivars reveals distinct patterns

Yan-Jun Liu (197444)
Guang-Long Wang (479663)
Jing Ma (24574)
Zhi-Sheng Xu (152820)
Feng Wang (44414)
Ai-Sheng Xiong (144859)

January 2018

Nucleotide acid and deduced amino acid sequences of DcSus3 from carrot (DOC 34 kb

Transcript profiling of sucrose synthase genes involved in sucrose metabolism among four carrot (Daucus carota L.) cultivars reveals distinct patterns

Yan-Jun Liu
Guang-Long Wang
Jing Ma
Zhi-Sheng Xu
Feng Wang
Ai-Sheng Xiong

January 2018

Abstract Background Carrot which contains lots of nutrients has a large demand around the world. The...

Additional file 9: Figure S4. of Association of variation in the sugarcane transcriptome with sugar content

Prathima Thirugnanasambandam (4041584)
Nam Hoang (4041575)
Agnelo Furtado (1823)
Frederick Botha (4616092)
Robert Henry (108785)

November 2017

Blast2GO and KEGG Mapping for DEGs in the SOGI-DGE with respect to starch and sucrose metabolism. Fi...

Additional file 4: of Sucrose metabolism in developing oil-rich tubers of Cyperus esculentus: comparative transcriptome analysis

Zhenle Yang (5556257)
Dantong Liu (4922356)
Hongying Ji (5556260)

July 2018

Figure S3. Relative gene expression levels for each isoform of sucrose synthesis pathways in diverse...

Additional file 5: of Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

Miyako Kodama (5614823)
Henrik Brinch-Pedersen (1759138)
Shrikant Sharma (1819531)
Inger Holme (3600365)
Bjarne Joernsgaard (3905599)
Tsaneta Dzhanfezova (3905605)
Daniel Amby (3528977)
Filipe Vieira (4908736)
Shanlin Liu (2851853)
M Gilbert (5947919)

November 2018

The results from the differentially expression analyses using callus (Additional file 5.1), using ca...

Additional file 2: of Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane

Prathima Thirugnanasambandam (4041584)
Patrick Mason (4041587)
Nam Hoang (4041575)
Agnelo Furtado (1823)
Frederik Botha (4041572)
Robert Henry (108785)

April 2019

Figure S1. Identification and sequence retrieval of SuSy transcripts from the SUGIT transcriptome re...

Tissue-specific expression of two genes for sucrose synthase in carrot (Daucus carota L.)

Sturm, Arnd
Lienhard, Susanne
Schatt, Stephan
Hardegger, Markus

June 2018

Sucrose synthase, which cleaves sucrose in the presence of uridine diphosphate (UDP) into UDP-glucos...

Additional file 6: of Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

Miyako Kodama (5614823)
Henrik Brinch-Pedersen (1759138)
Shrikant Sharma (1819531)
Inger Holme (3600365)
Bjarne Joernsgaard (3905599)
Tsaneta Dzhanfezova (3905605)
Daniel Amby (3528977)
Filipe Vieira (4908736)
Shanlin Liu (2851853)
M Gilbert (5947919)

November 2018

This file contains the results from differential expression analyses using DESeq2, EdgeR (glm model)...

Additional file 7: of Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

Miyako Kodama (5614823)
Henrik Brinch-Pedersen (1759138)
Shrikant Sharma (1819531)
Inger Holme (3600365)
Bjarne Joernsgaard (3905599)
Tsaneta Dzhanfezova (3905605)
Daniel Amby (3528977)
Filipe Vieira (4908736)
Shanlin Liu (2851853)
M Gilbert (5947919)

November 2018

The results from differential expression analyses for NAC and bZIP genes using DESeq2, EdgeR (glm mo...

Additional file 1: of Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane

Prathima Thirugnanasambandam (4041584)
Patrick Mason (4041587)
Nam Hoang (4041575)
Agnelo Furtado (1823)
Frederik Botha (4041572)
Robert Henry (108785)

April 2019

Table S1. Details of RNA-Seq reads from various tissues used for the SuSy expression study. Table S2...

Additional file 2: of Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

Miyako Kodama (5614823)
Henrik Brinch-Pedersen (1759138)
Shrikant Sharma (1819531)
Inger Holme (3600365)
Bjarne Joernsgaard (3905599)
Tsaneta Dzhanfezova (3905605)
Daniel Amby (3528977)
Filipe Vieira (4908736)
Shanlin Liu (2851853)
M Gilbert (5947919)

November 2018

Sequence and primer properties used to analyses 11 candidate genes and GAPDH (Additional file 2.1), ...

Additional file 2: of Sucrose metabolism in developing oil-rich tubers of Cyperus esculentus: comparative transcriptome analysis

Zhenle Yang (5556257)
Dantong Liu (4922356)
Hongying Ji (5556260)

July 2018

Figure S1. Relative gene expression levels for each invertase isoform in diverse plant storage tissu...

Additional file 3: of Sucrose metabolism in developing oil-rich tubers of Cyperus esculentus: comparative transcriptome analysis

Zhenle Yang (5556257)
Dantong Liu (4922356)
Hongying Ji (5556260)

July 2018

Figure S2. Relative gene expression levels for each isoform of hexose phosphorylation in diverse pla...

Additional file 3: of Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

Miyako Kodama (5614823)
Henrik Brinch-Pedersen (1759138)
Shrikant Sharma (1819531)
Inger Holme (3600365)
Bjarne Joernsgaard (3905599)
Tsaneta Dzhanfezova (3905605)
Daniel Amby (3528977)
Filipe Vieira (4908736)
Shanlin Liu (2851853)
M Gilbert (5947919)

November 2018

Anthocyanin content for outer, middle and inner tissues of two CH5544 samples obtained at 10Â weeks ...

Additional file 6: Figure S5. of Transcript profiling of sucrose synthase genes involved in sucrose metabolism among four carrot (Daucus carota L.) cultivars reveals distinct patterns

Abstract

Extracted data

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