Additional file 1: of Assessment of runs of homozygosity islands and estimates of genomic inbreeding in Gyr (Bos indicus) dairy cattle

Additional file 3: of Comparing SNP panels and statistical methods for estimating genomic breed composition of individual animals in ten cattle breeds

Jun He (46556)
Yage Guo (5618231)
Jiaqi Xu (1401178)
Hao Li (31608)
Anna Fuller (5234144)
Richard Tait (5618234)
Xiao-Lin Wu (63309)
Stewart Bauck (3094917)

August 2018

Figure S3. Plot of -2logLikelihood values computed for 198 purported Akaushi cattle, based on the ad...

Assessment of runs of homozygosity islands and estimates of genomic inbreeding in Gyr (Bos indicus) dairy cattle

Elisa Peripolli
Nedenia Bonvino Stafuzza
Danísio Prado Munari
André Luís Ferreira Lima
Renato Irgang
Marco Antonio Machado
João Cláudio do Carmo Panetto
Ricardo Vieira Ventura
Fernando Baldi
Marcos Vinícius Gualberto Barbosa da Silva

January 2018

Abstract Background Runs of homozygosity (ROH) are continuous homozygous segments of the DNA sequenc...

Additional file 1: of Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle

Yang Zhou (65942)
Erin Connor (3539750)
George Wiggans (392282)
Yongfang Lu (3251994)
Robert Tempelman (5162687)
Steven Schroeder (77597)
Hong Chen (108084)
George Liu (122581)

May 2018

Figure S1. Box plot for dPTA distribution of the 2 feed intake-related phenotypes of RFI and DMI. (P...

Additional file 8: of Autozygosity islands and ROH patterns in Nellore lineages: evidence of selection for functionally important traits

Elisa Peripolli (3508655)
Julia Metzger (149151)
Marcos de Lemos (3508601)
Nedenia Stafuzza (3462848)
Sabrina Kluska (5754971)
Bianca Olivieri (3508616)
Fabieli Feitosa (3508652)
Mariana Berton (3508631)
Fernando Lopes (559313)
Danísio Munari (3407825)
Raysildo Lôbo (5754974)
Cláudio de Ulhoa Magnabosco (4476511)
Fernando Di Croce (5754977)
Jason Osterstock (5754980)
Sue Denise (5754983)
Angélica Pereira (3508634)
Fernando Baldi (2833280)

September 2018

Runs of homozygosity islands described in several cattle breeds located within those observed in the...

Additional file 1: of Characterization of recombination features and the genetic basis in multiple cattle breeds

Botong Shen (822728)
Jicai Jiang (122571)
Eyal Seroussi (31976)
George Liu (122581)
Li Ma (46633)

April 2018

Eight breed- and sex-specific recombination maps for Holstein, Jersey, Brown Swiss, and Ayrshire in ...

Additional file 1: of Comparing SNP panels and statistical methods for estimating genomic breed composition of individual animals in ten cattle breeds

Jun He (46556)
Yage Guo (5618231)
Jiaqi Xu (1401178)
Hao Li (31608)
Anna Fuller (5234144)
Richard Tait (5618234)
Xiao-Lin Wu (63309)
Stewart Bauck (3094917)

August 2018

Figure S1. Density plot of genomic breed composition of 1424 animals putatively presented as Santa G...

Additional file 6: Figure S5. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle

Jeremy Howard (3557141)
Mekonnen Haile-Mariam (3557138)
Jennie Pryce (241354)
Christian Maltecca (690605)

October 2015

Plot of additive genomic estimated breeding (GEBV) variance, covariance between the additive genomic...

Additional file 8: Figure S7. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle

Jeremy Howard (3557141)
Mekonnen Haile-Mariam (3557138)
Jennie Pryce (241354)
Christian Maltecca (690605)

October 2015

Plot of additive genomic estimated breeding (GEBV) variance, covariance between the additive genomic...

Additional file 9: Figure S8. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle

Jeremy Howard (3557141)
Mekonnen Haile-Mariam (3557138)
Jennie Pryce (241354)
Christian Maltecca (690605)

October 2015

Plot of additive genomic estimated breeding (GEBV) variance, covariance between the additive genomic...

Additional file 7: Figure S6. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle

Jeremy Howard (3557141)
Mekonnen Haile-Mariam (3557138)
Jennie Pryce (241354)
Christian Maltecca (690605)

October 2015

Plot of additive genomic estimated breeding (GEBV) variance, covariance between the additive genomic...

Additional file 1: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

List of variations tested by fixing the effect of the variation in question. (TXT 226 bytes

Additional file 3: Table S1. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle

Jeremy Howard (3557141)
Mekonnen Haile-Mariam (3557138)
Jennie Pryce (241354)
Christian Maltecca (690605)

October 2015

Chromosomal locations and candidate genes associated with inbreeding depression for milk and fertili...

Additional file 3: of Characterization of recombination features and the genetic basis in multiple cattle breeds

Botong Shen (822728)
Jicai Jiang (122571)
Eyal Seroussi (31976)
George Liu (122581)
Li Ma (46633)

April 2018

Example regions showing different recombination patterns between four cattle breeds. Top 2: males; B...

Additional file 1: of Single nucleotide polymorphisms in candidate genes associated with milk yield in Argentinean Holstein and Holstein x Jersey cows

María Raschia (4852084)
Juan Nani (4852090)
Daniel Maizon (6080495)
María Beribe (4852081)
Ariel Amadio (3360812)
Mario Poli (522376)

January 2019

Primer sets for PCR used for amplification of 14 candidate genes on sire DNA. (DOC 109 kb

Additional file 1: Figure S1. of A genome-wide assessment of genetic diversity and population structure of Korean native cattle breeds

Aditi Sharma (467664)
Seung-Hwan Lee (231008)
Dajeong Lim (9990)
Han-Ha Chai (3191816)
Bong-Hwan Choi (62466)
Yongmin Cho (544004)

October 2016

MDS plot of the 20 breeds. Each color in the plot corresponds to the color in the legend. Figure S2....

Additional file 3: of Comparing SNP panels and statistical methods for estimating genomic breed composition of individual animals in ten cattle breeds

Jun He (46556)
Yage Guo (5618231)
Jiaqi Xu (1401178)
Hao Li (31608)
Anna Fuller (5234144)
Richard Tait (5618234)
Xiao-Lin Wu (63309)
Stewart Bauck (3094917)

August 2018

Figure S3. Plot of -2logLikelihood values computed for 198 purported Akaushi cattle, based on the ad...

Assessment of runs of homozygosity islands and estimates of genomic inbreeding in Gyr (Bos indicus) dairy cattle

Elisa Peripolli
Nedenia Bonvino Stafuzza
Danísio Prado Munari
André Luís Ferreira Lima
Renato Irgang
Marco Antonio Machado
João Cláudio do Carmo Panetto
Ricardo Vieira Ventura
Fernando Baldi
Marcos Vinícius Gualberto Barbosa da Silva

January 2018

Abstract Background Runs of homozygosity (ROH) are continuous homozygous segments of the DNA sequenc...

Additional file 1: of Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle

Yang Zhou (65942)
Erin Connor (3539750)
George Wiggans (392282)
Yongfang Lu (3251994)
Robert Tempelman (5162687)
Steven Schroeder (77597)
Hong Chen (108084)
George Liu (122581)

May 2018

Figure S1. Box plot for dPTA distribution of the 2 feed intake-related phenotypes of RFI and DMI. (P...

Additional file 8: of Autozygosity islands and ROH patterns in Nellore lineages: evidence of selection for functionally important traits

Elisa Peripolli (3508655)
Julia Metzger (149151)
Marcos de Lemos (3508601)
Nedenia Stafuzza (3462848)
Sabrina Kluska (5754971)
Bianca Olivieri (3508616)
Fabieli Feitosa (3508652)
Mariana Berton (3508631)
Fernando Lopes (559313)
Danísio Munari (3407825)
Raysildo Lôbo (5754974)
Cláudio de Ulhoa Magnabosco (4476511)
Fernando Di Croce (5754977)
Jason Osterstock (5754980)
Sue Denise (5754983)
Angélica Pereira (3508634)
Fernando Baldi (2833280)

September 2018

Runs of homozygosity islands described in several cattle breeds located within those observed in the...

Additional file 1: of Characterization of recombination features and the genetic basis in multiple cattle breeds

Botong Shen (822728)
Jicai Jiang (122571)
Eyal Seroussi (31976)
George Liu (122581)
Li Ma (46633)

April 2018

Eight breed- and sex-specific recombination maps for Holstein, Jersey, Brown Swiss, and Ayrshire in ...

Additional file 1: of Comparing SNP panels and statistical methods for estimating genomic breed composition of individual animals in ten cattle breeds

Jun He (46556)
Yage Guo (5618231)
Jiaqi Xu (1401178)
Hao Li (31608)
Anna Fuller (5234144)
Richard Tait (5618234)
Xiao-Lin Wu (63309)
Stewart Bauck (3094917)

August 2018

Figure S1. Density plot of genomic breed composition of 1424 animals putatively presented as Santa G...

Additional file 6: Figure S5. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle

Jeremy Howard (3557141)
Mekonnen Haile-Mariam (3557138)
Jennie Pryce (241354)
Christian Maltecca (690605)

October 2015

Plot of additive genomic estimated breeding (GEBV) variance, covariance between the additive genomic...

Additional file 8: Figure S7. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle

Jeremy Howard (3557141)
Mekonnen Haile-Mariam (3557138)
Jennie Pryce (241354)
Christian Maltecca (690605)

October 2015

Plot of additive genomic estimated breeding (GEBV) variance, covariance between the additive genomic...

Additional file 9: Figure S8. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle

Jeremy Howard (3557141)
Mekonnen Haile-Mariam (3557138)
Jennie Pryce (241354)
Christian Maltecca (690605)

October 2015

Plot of additive genomic estimated breeding (GEBV) variance, covariance between the additive genomic...

Additional file 7: Figure S6. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle

Jeremy Howard (3557141)
Mekonnen Haile-Mariam (3557138)
Jennie Pryce (241354)
Christian Maltecca (690605)

October 2015

Plot of additive genomic estimated breeding (GEBV) variance, covariance between the additive genomic...

Additional file 1: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

List of variations tested by fixing the effect of the variation in question. (TXT 226 bytes

Additional file 3: Table S1. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle

Jeremy Howard (3557141)
Mekonnen Haile-Mariam (3557138)
Jennie Pryce (241354)
Christian Maltecca (690605)

October 2015

Chromosomal locations and candidate genes associated with inbreeding depression for milk and fertili...

Additional file 3: of Characterization of recombination features and the genetic basis in multiple cattle breeds

Botong Shen (822728)
Jicai Jiang (122571)
Eyal Seroussi (31976)
George Liu (122581)
Li Ma (46633)

April 2018

Example regions showing different recombination patterns between four cattle breeds. Top 2: males; B...

Additional file 1: of Single nucleotide polymorphisms in candidate genes associated with milk yield in Argentinean Holstein and Holstein x Jersey cows

María Raschia (4852084)
Juan Nani (4852090)
Daniel Maizon (6080495)
María Beribe (4852081)
Ariel Amadio (3360812)
Mario Poli (522376)

January 2019

Primer sets for PCR used for amplification of 14 candidate genes on sire DNA. (DOC 109 kb

Additional file 1: Figure S1. of A genome-wide assessment of genetic diversity and population structure of Korean native cattle breeds

Aditi Sharma (467664)
Seung-Hwan Lee (231008)
Dajeong Lim (9990)
Han-Ha Chai (3191816)
Bong-Hwan Choi (62466)
Yongmin Cho (544004)

October 2016

MDS plot of the 20 breeds. Each color in the plot corresponds to the color in the legend. Figure S2....

Additional file 3: of Comparing SNP panels and statistical methods for estimating genomic breed composition of individual animals in ten cattle breeds

Jun He (46556)
Yage Guo (5618231)
Jiaqi Xu (1401178)
Hao Li (31608)
Anna Fuller (5234144)
Richard Tait (5618234)
Xiao-Lin Wu (63309)
Stewart Bauck (3094917)

August 2018

Figure S3. Plot of -2logLikelihood values computed for 198 purported Akaushi cattle, based on the ad...

Assessment of runs of homozygosity islands and estimates of genomic inbreeding in Gyr (Bos indicus) dairy cattle

Elisa Peripolli
Nedenia Bonvino Stafuzza
Danísio Prado Munari
André Luís Ferreira Lima
Renato Irgang
Marco Antonio Machado
João Cláudio do Carmo Panetto
Ricardo Vieira Ventura
Fernando Baldi
Marcos Vinícius Gualberto Barbosa da Silva

January 2018

Abstract Background Runs of homozygosity (ROH) are continuous homozygous segments of the DNA sequenc...

Additional file 1: of Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle

Yang Zhou (65942)
Erin Connor (3539750)
George Wiggans (392282)
Yongfang Lu (3251994)
Robert Tempelman (5162687)
Steven Schroeder (77597)
Hong Chen (108084)
George Liu (122581)

May 2018

Figure S1. Box plot for dPTA distribution of the 2 feed intake-related phenotypes of RFI and DMI. (P...

Additional file 1: of Assessment of runs of homozygosity islands and estimates of genomic inbreeding in Gyr (Bos indicus) dairy cattle

Abstract

Extracted data

Additional file 1: of Assessment of runs of homozygosity islands and estimates of genomic inbreeding in Gyr (Bos indicus) dairy cattle

Abstract

Extracted data

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