Additional file 11: of Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

Additional file 17: Tables S22, S23, S24 and S25. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

Gabriella Oliveira (4837605)
Luciana Regitano (3407810)
Aline Cesar (3508628)
James Reecy (3561878)
Karina Degaki (4837602)
Mirele Poleti (3583997)
Andrezza Felício (3584003)
James Koltes (3570086)
Luiz Coutinho (3508640)

February 2018

Gene ontology (GO) enrichment analysis by Cytoscape of genes in mRNA modules correlated with the int...

Additional file 1: of Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis glomerata L.)

Guangyan Feng (4436689)
Lei Xu (78676)
Jianping Wang (215292)
Gang Nie (1643194)
Bradley Bushman (5816930)
Wengang Xie (3945377)
Haidong Yan (102955)
Zhongfu Yang (4436686)
Hao Guan (498369)
Linkai Huang (546829)
Xinquan Zhang (546832)

October 2018

Table S1. Summary statistics of RNA sequencing in different samples. Table S2. Summary of transcript...

Additional file 1: Table S1. of MicroRNA profiles reveal female allotetraploid hybrid fertility

Rong Zhou (138287)
Yanhong Wu (312308)
Min Tao (143985)
Chun Zhang (29010)
Shaojun Liu (282495)

October 2015

Data statistics of samples. Table S2. Classify annotation of clean reads. Table S3. Actual reads cou...

Additional file 13: of Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

Kisun Pokharel (4805763)
Jaana Peippo (4805769)
Mervi Honkatukia (3843718)
Arja SeppĂ¤lĂ¤ (4805766)
Johanna Rautiainen (4805772)
Nasser Ghanem (79375)
Tuula-Marjatta Hamama (4805760)
Mark Crowe (818274)
Magnus Andersson (236322)
Meng-Hua Li (197079)
Juha Kantanen (197090)

January 2018

List of miRNAs that were differentially expressed between Finnsheep and Texel on a flushing diet. (X...

Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

Kisun Pokharel
Jaana Peippo
Mervi Honkatukia
Arja Seppälä
Johanna Rautiainen
Nasser Ghanem
Tuula-Marjatta Hamama
Mark A. Crowe
Magnus Andersson
Meng-Hua Li
Juha Kantanen

January 2018

Abstract Background The highly prolific breeds of domestic sheep (Ovis aries) are globally valuable ...

Additional file 2: of Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep

Yufang Liu (227364)
Jibin Zhang (306105)
Qiao Xu (1694302)
Xiaolong Kang (450322)
Kejun Wang (801298)
Keliang Wu (147828)
Meiying Fang (107868)

May 2018

Figure S1. Secondary structure predictions for novel miRNAs. The red color shows the mature miRNA se...

Additional file 3: of Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep

Yufang Liu (227364)
Jibin Zhang (306105)
Qiao Xu (1694302)
Xiaolong Kang (450322)
Kejun Wang (801298)
Keliang Wu (147828)
Meiying Fang (107868)

May 2018

Table S2. miRNAs exhibiting differential expression between the skin samples of lambs and adults. (X...

Additional file 6: of Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep

Yufang Liu (227364)
Jibin Zhang (306105)
Qiao Xu (1694302)
Xiaolong Kang (450322)
Kejun Wang (801298)
Keliang Wu (147828)
Meiying Fang (107868)

May 2018

Table S5. Signaling pathways revealed by KEGG analysis that involve miRNAs highly expressed in lambs...

Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

Pokharel, Kisun
Peippo, Jaana
Honkatukia, Mervi
Seppälä, Arja
Rautiainen, Johanna
Ghanem, Nasser
Hamama, Tuula-Marjatta
Crowe, Mark A.
Andersson, Magnus
Li, Meng-Hua
Kantanen, Juha

January 2018

Background: The highly prolific breeds of domestic sheep (Ovis aries) are globally valuable genetic ...

Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

Pokharel, Kisun
Peippo, Jaana
Honkatukia, Mervi
Seppälä, Arja
Rautiainen, Johanna
Ghanem, Nasser
Hamama, Tuula-Marjatta
Crowe, Mark A.
Andersson, Magnus
Li, Meng-Hua
Kantanen, Juha

January 2018

Background: The highly prolific breeds of domestic sheep (Ovis aries) are globally valuable genetic ...

Additional file 7: of Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep

Yufang Liu (227364)
Jibin Zhang (306105)
Qiao Xu (1694302)
Xiaolong Kang (450322)
Kejun Wang (801298)
Keliang Wu (147828)
Meiying Fang (107868)

May 2018

Table S6. The signaling pathways analysis with target genes that form miRNA-mRNA pairs with differen...

Identification and Characterization of the miRNA Transcriptome of Ovis aries

Shifang Zhang (389139)
Fuping Zhao (389140)
Caihong Wei (389141)
Xihui Sheng (240059)
Hangxing Ren (389142)
Lingyang Xu (389143)
Jian Lu (51707)
Jiasen Liu (102834)
Li Zhang (8200)
Lixin Du (240090)

March 2013

<div>The discovery and identification of Ovis aries (sheep) miRNAs will further promote th...

Additional file 14: Tables S18, S19, S20 and S21. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

Gabriella Oliveira (4837605)
Luciana Regitano (3407810)
Aline Cesar (3508628)
James Reecy (3561878)
Karina Degaki (4837602)
Mirele Poleti (3583997)
Andrezza Felício (3584003)
James Koltes (3570086)
Luiz Coutinho (3508640)

February 2018

Gene ontology (GO) enrichment analysis by Cytoscape of genes in mRNA modules negatively correlated w...

Additional file 8: of Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep

Yufang Liu (227364)
Jibin Zhang (306105)
Qiao Xu (1694302)
Xiaolong Kang (450322)
Kejun Wang (801298)
Keliang Wu (147828)
Meiying Fang (107868)

May 2018

Table S7. Sequences of primer used for amplification of wild type or mutant KRT83 CDS region. (DOCX ...

Additional file 1: of Comprehensive analysis of blood cells and plasma identifies tissue-specific miRNAs as potential novel circulating biomarkers in cattle

Jason Ioannidis (3164142)
F. Xavier Donadeu (3164145)

April 2018

Sequencing miRNA analysis. Normalised miRNA expression levels in bovine blood plasma and cell sample...

Additional file 17: Tables S22, S23, S24 and S25. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

Gabriella Oliveira (4837605)
Luciana Regitano (3407810)
Aline Cesar (3508628)
James Reecy (3561878)
Karina Degaki (4837602)
Mirele Poleti (3583997)
Andrezza Felício (3584003)
James Koltes (3570086)
Luiz Coutinho (3508640)

February 2018

Gene ontology (GO) enrichment analysis by Cytoscape of genes in mRNA modules correlated with the int...

Additional file 1: of Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis glomerata L.)

Guangyan Feng (4436689)
Lei Xu (78676)
Jianping Wang (215292)
Gang Nie (1643194)
Bradley Bushman (5816930)
Wengang Xie (3945377)
Haidong Yan (102955)
Zhongfu Yang (4436686)
Hao Guan (498369)
Linkai Huang (546829)
Xinquan Zhang (546832)

October 2018

Table S1. Summary statistics of RNA sequencing in different samples. Table S2. Summary of transcript...

Additional file 1: Table S1. of MicroRNA profiles reveal female allotetraploid hybrid fertility

Rong Zhou (138287)
Yanhong Wu (312308)
Min Tao (143985)
Chun Zhang (29010)
Shaojun Liu (282495)

October 2015

Data statistics of samples. Table S2. Classify annotation of clean reads. Table S3. Actual reads cou...

Additional file 13: of Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

Kisun Pokharel (4805763)
Jaana Peippo (4805769)
Mervi Honkatukia (3843718)
Arja SeppĂ¤lĂ¤ (4805766)
Johanna Rautiainen (4805772)
Nasser Ghanem (79375)
Tuula-Marjatta Hamama (4805760)
Mark Crowe (818274)
Magnus Andersson (236322)
Meng-Hua Li (197079)
Juha Kantanen (197090)

January 2018

List of miRNAs that were differentially expressed between Finnsheep and Texel on a flushing diet. (X...

Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

Kisun Pokharel
Jaana Peippo
Mervi Honkatukia
Arja Seppälä
Johanna Rautiainen
Nasser Ghanem
Tuula-Marjatta Hamama
Mark A. Crowe
Magnus Andersson
Meng-Hua Li
Juha Kantanen

January 2018

Abstract Background The highly prolific breeds of domestic sheep (Ovis aries) are globally valuable ...

Additional file 2: of Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep

Yufang Liu (227364)
Jibin Zhang (306105)
Qiao Xu (1694302)
Xiaolong Kang (450322)
Kejun Wang (801298)
Keliang Wu (147828)
Meiying Fang (107868)

May 2018

Figure S1. Secondary structure predictions for novel miRNAs. The red color shows the mature miRNA se...

Additional file 3: of Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep

Yufang Liu (227364)
Jibin Zhang (306105)
Qiao Xu (1694302)
Xiaolong Kang (450322)
Kejun Wang (801298)
Keliang Wu (147828)
Meiying Fang (107868)

May 2018

Table S2. miRNAs exhibiting differential expression between the skin samples of lambs and adults. (X...

Additional file 6: of Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep

Yufang Liu (227364)
Jibin Zhang (306105)
Qiao Xu (1694302)
Xiaolong Kang (450322)
Kejun Wang (801298)
Keliang Wu (147828)
Meiying Fang (107868)

May 2018

Table S5. Signaling pathways revealed by KEGG analysis that involve miRNAs highly expressed in lambs...

Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

Pokharel, Kisun
Peippo, Jaana
Honkatukia, Mervi
Seppälä, Arja
Rautiainen, Johanna
Ghanem, Nasser
Hamama, Tuula-Marjatta
Crowe, Mark A.
Andersson, Magnus
Li, Meng-Hua
Kantanen, Juha

January 2018

Background: The highly prolific breeds of domestic sheep (Ovis aries) are globally valuable genetic ...

Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

Pokharel, Kisun
Peippo, Jaana
Honkatukia, Mervi
Seppälä, Arja
Rautiainen, Johanna
Ghanem, Nasser
Hamama, Tuula-Marjatta
Crowe, Mark A.
Andersson, Magnus
Li, Meng-Hua
Kantanen, Juha

January 2018

Background: The highly prolific breeds of domestic sheep (Ovis aries) are globally valuable genetic ...

Additional file 7: of Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep

Yufang Liu (227364)
Jibin Zhang (306105)
Qiao Xu (1694302)
Xiaolong Kang (450322)
Kejun Wang (801298)
Keliang Wu (147828)
Meiying Fang (107868)

May 2018

Table S6. The signaling pathways analysis with target genes that form miRNA-mRNA pairs with differen...

Identification and Characterization of the miRNA Transcriptome of Ovis aries

Shifang Zhang (389139)
Fuping Zhao (389140)
Caihong Wei (389141)
Xihui Sheng (240059)
Hangxing Ren (389142)
Lingyang Xu (389143)
Jian Lu (51707)
Jiasen Liu (102834)
Li Zhang (8200)
Lixin Du (240090)

March 2013

<div>The discovery and identification of Ovis aries (sheep) miRNAs will further promote th...

Additional file 14: Tables S18, S19, S20 and S21. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

Gabriella Oliveira (4837605)
Luciana Regitano (3407810)
Aline Cesar (3508628)
James Reecy (3561878)
Karina Degaki (4837602)
Mirele Poleti (3583997)
Andrezza Felício (3584003)
James Koltes (3570086)
Luiz Coutinho (3508640)

February 2018

Gene ontology (GO) enrichment analysis by Cytoscape of genes in mRNA modules negatively correlated w...

Additional file 8: of Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep

Yufang Liu (227364)
Jibin Zhang (306105)
Qiao Xu (1694302)
Xiaolong Kang (450322)
Kejun Wang (801298)
Keliang Wu (147828)
Meiying Fang (107868)

May 2018

Table S7. Sequences of primer used for amplification of wild type or mutant KRT83 CDS region. (DOCX ...

Additional file 1: of Comprehensive analysis of blood cells and plasma identifies tissue-specific miRNAs as potential novel circulating biomarkers in cattle

Jason Ioannidis (3164142)
F. Xavier Donadeu (3164145)

April 2018

Sequencing miRNA analysis. Normalised miRNA expression levels in bovine blood plasma and cell sample...

Additional file 17: Tables S22, S23, S24 and S25. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

Gabriella Oliveira (4837605)
Luciana Regitano (3407810)
Aline Cesar (3508628)
James Reecy (3561878)
Karina Degaki (4837602)
Mirele Poleti (3583997)
Andrezza Felício (3584003)
James Koltes (3570086)
Luiz Coutinho (3508640)

February 2018

Gene ontology (GO) enrichment analysis by Cytoscape of genes in mRNA modules correlated with the int...

Additional file 1: of Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis glomerata L.)

Guangyan Feng (4436689)
Lei Xu (78676)
Jianping Wang (215292)
Gang Nie (1643194)
Bradley Bushman (5816930)
Wengang Xie (3945377)
Haidong Yan (102955)
Zhongfu Yang (4436686)
Hao Guan (498369)
Linkai Huang (546829)
Xinquan Zhang (546832)

October 2018

Table S1. Summary statistics of RNA sequencing in different samples. Table S2. Summary of transcript...

Additional file 1: Table S1. of MicroRNA profiles reveal female allotetraploid hybrid fertility

Rong Zhou (138287)
Yanhong Wu (312308)
Min Tao (143985)
Chun Zhang (29010)
Shaojun Liu (282495)

October 2015

Data statistics of samples. Table S2. Classify annotation of clean reads. Table S3. Actual reads cou...

Additional file 11: of Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

Abstract

Extracted data

Additional file 11: of Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

Abstract

Extracted data

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