Additional file 7: Figure S3. of Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

Controlling for Phylogenetic Relatedness and Evolutionary Rates Improves the Discovery of Associations Between Species' Phenotypic and Genomic Differences

Prudent, X.
Parra, G.
Schwede, P.
Roscito, J.
Hiller, M.

August 2016

The growing number of sequenced genomes allows us now to address a key question in genetics and evol...

Controlling for Phylogenetic Relatedness and Evolutionary Rates Improves the Discovery of Associations Between Species' Phenotypic and Genomic Differences.

Prudent, X.
Parra, G.
Schwede, P.
Roscito, J.
Hiller, M.

January 2016

The growing number of sequenced genomes allows us now to address a key question in genetics and evol...

Additional file 4: Figure S3. of New genes drive the evolution of gene interaction networks in the human and mouse genomes

Wenyu Zhang (227569)
Patrick Landback (200709)
Andrea Gschwend (3567077)
Bairong Shen (166580)
Manyuan Long (36802)

October 2015

PPI network topological patterns of human genes in relation to their phylogenetic groups from anothe...

Additional file 10: Table S7. of Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

Rui Borges (108635)
Warren Johnson (3255066)
Stephen O’Brien (2419792)
Cidália Gomes (3155643)
Christopher Heesy (4823400)
Agostinho Antunes (47525)

February 2018

Dataset of the eco-morphological variables for the studied mammalian species. Variables: activity pa...

Additional file 6: Table S4. of Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

Rui Borges (108635)
Warren Johnson (3255066)
Stephen O’Brien (2419792)
Cidália Gomes (3155643)
Christopher Heesy (4823400)
Agostinho Antunes (47525)

February 2018

Ancestral character reconstructions of orbit convergence and visual acuity in mammals. The phylogene...

Additional file 4: Table S3. of Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

Rui Borges (108635)
Warren Johnson (3255066)
Stephen O’Brien (2419792)
Cidália Gomes (3155643)
Christopher Heesy (4823400)
Agostinho Antunes (47525)

February 2018

Species-specific branch selection tests. The one-ratio model (H0) was tested against the two-ratios ...

Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

Borges, Rui
Johnson, Warren E.
O\u27Brien, Stephen J.
Gomes, Cidália
Heesy, Christopher P.
Antunes, Agostinho

February 2018

Background: Based on evolutionary patterns of the vertebrate eye, Walls (1942) hypothesized that ear...

Wu & Wang_Table S1_ESM from Convergent evolution of bird-mammal shared characteristics for adapting to nocturnality

Yonghua Wu (839891)
Haifeng Wang (188956)

February 2019

Species and sequences used in this study. Our previously published 15 species names and two newly ge...

The Molecular Evolution of Mammalian Vision: Pseudogenes, Spectral Shifts and Their Historical Significance

Emerling, Christopher Allan

January 2015

Previous research on the evolution of vision in mammals has typically focused on the duplication and...

Biogeography of time partitioning in mammals.

Bennie, Jonathan
Duffy, James P.
Inger, R
Gaston, Kevin J.

April 2015

Additional file 6: Figure S4. of New genes drive the evolution of gene interaction networks in the human and mouse genomes

Wenyu Zhang (227569)
Patrick Landback (200709)
Andrea Gschwend (3567077)
Bairong Shen (166580)
Manyuan Long (36802)

October 2015

PPI network topological patterns of mouse genes in relation to divergence times. (PDF 146 kb

Additional file 2: Table S2. of Selection on different genes with equivalent functions: the convergence story told by Hox genes along the evolution of aquatic mammalian lineages

Mariana Nery (3429554)
Brunno Borges (3429551)
Aline Dragalzew (3429557)
Tiana Kohlsdorf (120086)

May 2016

Hox clusters size of those mammals with sequenced genomes included in our study. (DOCX 114 kb

Data from: Biophysical modeling of the temporal niche: from first principles to the evolution of activity patterns

Levy, Ofir
Dayan, Tamar
Kronfeld-Schor, Noga
Porter, Warren P.

Most mammals can be characterized as nocturnal or diurnal. However infrequently, species may overcom...

Data from: Nocturnality in Synapsids predates the origin of mammals by over 100 million years

Angielczyk, Kenneth D.
Schmitz, Lars

August 2014

Nocturnality is widespread among extant mammals and often considered the ancestral behavioural patte...

Temporal niche expansion in mammals from a nocturnal ancestor after dinosaur extinction

Maor, R
Ferguson-Gow, H
Dayan, T
Jones, KE

January 2018

Most modern mammals, including strictly diurnal species, exhibit sensory adaptations to nocturnal ac...

Controlling for Phylogenetic Relatedness and Evolutionary Rates Improves the Discovery of Associations Between Species' Phenotypic and Genomic Differences

Prudent, X.
Parra, G.
Schwede, P.
Roscito, J.
Hiller, M.

August 2016

The growing number of sequenced genomes allows us now to address a key question in genetics and evol...

Controlling for Phylogenetic Relatedness and Evolutionary Rates Improves the Discovery of Associations Between Species' Phenotypic and Genomic Differences.

Prudent, X.
Parra, G.
Schwede, P.
Roscito, J.
Hiller, M.

January 2016

The growing number of sequenced genomes allows us now to address a key question in genetics and evol...

Additional file 4: Figure S3. of New genes drive the evolution of gene interaction networks in the human and mouse genomes

Wenyu Zhang (227569)
Patrick Landback (200709)
Andrea Gschwend (3567077)
Bairong Shen (166580)
Manyuan Long (36802)

October 2015

PPI network topological patterns of human genes in relation to their phylogenetic groups from anothe...

Additional file 10: Table S7. of Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

Rui Borges (108635)
Warren Johnson (3255066)
Stephen O’Brien (2419792)
Cidália Gomes (3155643)
Christopher Heesy (4823400)
Agostinho Antunes (47525)

February 2018

Dataset of the eco-morphological variables for the studied mammalian species. Variables: activity pa...

Additional file 6: Table S4. of Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

Rui Borges (108635)
Warren Johnson (3255066)
Stephen O’Brien (2419792)
Cidália Gomes (3155643)
Christopher Heesy (4823400)
Agostinho Antunes (47525)

February 2018

Ancestral character reconstructions of orbit convergence and visual acuity in mammals. The phylogene...

Additional file 4: Table S3. of Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

Rui Borges (108635)
Warren Johnson (3255066)
Stephen O’Brien (2419792)
Cidália Gomes (3155643)
Christopher Heesy (4823400)
Agostinho Antunes (47525)

February 2018

Species-specific branch selection tests. The one-ratio model (H0) was tested against the two-ratios ...

Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

Borges, Rui
Johnson, Warren E.
O\u27Brien, Stephen J.
Gomes, Cidália
Heesy, Christopher P.
Antunes, Agostinho

February 2018

Background: Based on evolutionary patterns of the vertebrate eye, Walls (1942) hypothesized that ear...

Wu & Wang_Table S1_ESM from Convergent evolution of bird-mammal shared characteristics for adapting to nocturnality

Yonghua Wu (839891)
Haifeng Wang (188956)

February 2019

Species and sequences used in this study. Our previously published 15 species names and two newly ge...

The Molecular Evolution of Mammalian Vision: Pseudogenes, Spectral Shifts and Their Historical Significance

Emerling, Christopher Allan

January 2015

Previous research on the evolution of vision in mammals has typically focused on the duplication and...

Biogeography of time partitioning in mammals.

Bennie, Jonathan
Duffy, James P.
Inger, R
Gaston, Kevin J.

April 2015

Additional file 6: Figure S4. of New genes drive the evolution of gene interaction networks in the human and mouse genomes

Wenyu Zhang (227569)
Patrick Landback (200709)
Andrea Gschwend (3567077)
Bairong Shen (166580)
Manyuan Long (36802)

October 2015

PPI network topological patterns of mouse genes in relation to divergence times. (PDF 146 kb

Additional file 2: Table S2. of Selection on different genes with equivalent functions: the convergence story told by Hox genes along the evolution of aquatic mammalian lineages

Mariana Nery (3429554)
Brunno Borges (3429551)
Aline Dragalzew (3429557)
Tiana Kohlsdorf (120086)

May 2016

Hox clusters size of those mammals with sequenced genomes included in our study. (DOCX 114 kb

Data from: Biophysical modeling of the temporal niche: from first principles to the evolution of activity patterns

Levy, Ofir
Dayan, Tamar
Kronfeld-Schor, Noga
Porter, Warren P.

Most mammals can be characterized as nocturnal or diurnal. However infrequently, species may overcom...

Data from: Nocturnality in Synapsids predates the origin of mammals by over 100 million years

Angielczyk, Kenneth D.
Schmitz, Lars

August 2014

Nocturnality is widespread among extant mammals and often considered the ancestral behavioural patte...

Temporal niche expansion in mammals from a nocturnal ancestor after dinosaur extinction

Maor, R
Ferguson-Gow, H
Dayan, T
Jones, KE

January 2018

Most modern mammals, including strictly diurnal species, exhibit sensory adaptations to nocturnal ac...

Controlling for Phylogenetic Relatedness and Evolutionary Rates Improves the Discovery of Associations Between Species' Phenotypic and Genomic Differences

Prudent, X.
Parra, G.
Schwede, P.
Roscito, J.
Hiller, M.

August 2016

The growing number of sequenced genomes allows us now to address a key question in genetics and evol...

Controlling for Phylogenetic Relatedness and Evolutionary Rates Improves the Discovery of Associations Between Species' Phenotypic and Genomic Differences.

Prudent, X.
Parra, G.
Schwede, P.
Roscito, J.
Hiller, M.

January 2016

The growing number of sequenced genomes allows us now to address a key question in genetics and evol...

Additional file 4: Figure S3. of New genes drive the evolution of gene interaction networks in the human and mouse genomes

Wenyu Zhang (227569)
Patrick Landback (200709)
Andrea Gschwend (3567077)
Bairong Shen (166580)
Manyuan Long (36802)

October 2015

PPI network topological patterns of human genes in relation to their phylogenetic groups from anothe...

Additional file 7: Figure S3. of Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

Abstract

Extracted data

Additional file 7: Figure S3. of Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

Abstract

Extracted data

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