Additional file 6: of Promoter methylation of DNA damage repair (DDR) genes in human tumor entities: RBBP8/CtIP is almost exclusively methylated in bladder cancer

Jolein Mijnes (3155121)
JĂźrgen Veeck (3777349)
Nadine Gaisa (4831452)
Eduard Burghardt (4831449)
Tim de Ruijter (4831455)
Sonja Gostek (4831458)
Edgar Dahl (42758)
David Pfister (2570215)
Sebastian Schmid (775115)
Ruth KnĂźchel (3777352)
Michael Rose (321021)

Publication date

February 2018

DOI

10.6084/m9.figshare.5863026.v1

Abstract

This table summarizes the results from the multivariate Cox regression analysis including all factors influencing overall survival. (DOC 34Â kb

Extracted data

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Data Protection

Additional file 6: of Promoter methylation of DNA damage repair (DDR) genes in human tumor entities: RBBP8/CtIP is almost exclusively methylated in bladder cancer

Jolein Mijnes (3155121)
JĂźrgen Veeck (3777349)
Nadine Gaisa (4831452)
Eduard Burghardt (4831449)
Tim de Ruijter (4831455)
Sonja Gostek (4831458)
Edgar Dahl (42758)
David Pfister (2570215)
Sebastian Schmid (775115)
Ruth KnĂźchel (3777352)
Michael Rose (321021)

Open link

Publication date

February 2018

DOI

10.6084/m9.figshare.5863026.v1

Abstract

This table summarizes the results from the multivariate Cox regression analysis including all factors influencing overall survival. (DOC 34Â kb

Extracted data

Antoine van der Heijden (2038363)
Lourdes Mengual (95546)
Mercedes Ingelmo-Torres (3488972)
Juan Lozano (3488975)
Cindy van Rijt-van de Westerlo (5314490)
Montserrat Baixauli (5314496)
Bogdan Geavlete (5314493)
Cristian Moldoveanud (5314478)
Cosmin Ene (5314487)
Colin Dinney (188670)
Bogdan Czerniak (111162)
Jack Schalken (3964190)
Lambertus Kiemeney (5314484)
Maria Ribal (5314475)
J. Witjes (5314481)
Antonio Alcaraz (95550)

May 2018

Figure S6. DNA methylation profiles for bladder cancer and control tissue samples for the three-gene...

Additional file 8: of Urine cell-based DNA methylation classifier for monitoring bladder cancer

Antoine van der Heijden (2038363)
Lourdes Mengual (95546)
Mercedes Ingelmo-Torres (3488972)
Juan Lozano (3488975)
Cindy van Rijt-van de Westerlo (5314490)
Montserrat Baixauli (5314496)
Bogdan Geavlete (5314493)
Cristian Moldoveanud (5314478)
Cosmin Ene (5314487)
Colin Dinney (188670)
Bogdan Czerniak (111162)
Jack Schalken (3964190)
Lambertus Kiemeney (5314484)
Maria Ribal (5314475)
J. Witjes (5314481)
Antonio Alcaraz (95550)

May 2018

Figure S5. Flow diagram of participants in the cross-sectional study according a) to the three-gene ...

Additional file 8: of A pan-cancer analysis of driver gene mutations, DNA methylation and gene expressions reveals that chromatin remodeling is a major mechanism inducing global changes in cancer epigenomes

Ahrim Youn (4606252)
Kyung In Kim (47502)
Raul Rabadan (88130)
Benjamin Tycko (237065)
Yufeng Shen (239573)
Shuang Wang (46453)

November 2018

Table S6. Number of tumor samples with mutations in each of the 21 chromatin regulator genes in list...

Additional file 12: of Promoter methylation of DNA damage repair (DDR) genes in human tumor entities: RBBP8/CtIP is almost exclusively methylated in bladder cancer

Jolein Mijnes (3155121)
JĂźrgen Veeck (3777349)
Nadine Gaisa (4831452)
Eduard Burghardt (4831449)
Tim de Ruijter (4831455)
Sonja Gostek (4831458)
Edgar Dahl (42758)
David Pfister (2570215)
Sebastian Schmid (775115)
Ruth KnĂźchel (3777352)
Michael Rose (321021)

February 2018

This dataset illustrates a summary of the TCGA samples used in this study. (XLS 27Â kb

Additional file 2: of Promoter methylation of DNA damage repair (DDR) genes in human tumor entities: RBBP8/CtIP is almost exclusively methylated in bladder cancer

Jolein Mijnes (3155121)
JĂźrgen Veeck (3777349)
Nadine Gaisa (4831452)
Eduard Burghardt (4831449)
Tim de Ruijter (4831455)
Sonja Gostek (4831458)
Edgar Dahl (42758)
David Pfister (2570215)
Sebastian Schmid (775115)
Ruth KnĂźchel (3777352)
Michael Rose (321021)

February 2018

Detailed frequency of DNAm of BRCA1, MGMT, and ERCC1 across cancer entities and corresponding normal...

Additional file 13: of Promoter methylation of DNA damage repair (DDR) genes in human tumor entities: RBBP8/CtIP is almost exclusively methylated in bladder cancer

Jolein Mijnes (3155121)
JĂźrgen Veeck (3777349)
Nadine Gaisa (4831452)
Eduard Burghardt (4831449)
Tim de Ruijter (4831455)
Sonja Gostek (4831458)
Edgar Dahl (42758)
David Pfister (2570215)
Sebastian Schmid (775115)
Ruth KnĂźchel (3777352)
Michael Rose (321021)

February 2018

Illustrating the definition of probe sets near a TSS using three different genes (RBBP8, MGMT, and L...

Additional file 1: Table S1. of Clinical significance of CDH13 promoter methylation as a biomarker for bladder cancer: a meta-analysis

Feng Chen (25347)
Tao Huang (110613)
Yu Ren (428662)
Junjun Wei (3543962)
Zhongguan Lou (3543959)
Xue Wang (102830)
Xiaoxiao Fan (680758)
Yirun Chen (3543968)
Guobin Weng (3543965)
Xuping Yao (3543971)

August 2016

Eggerâs funnel plot of the publication bias test for CDH13 methylation. (DOCX 21Â kb

Additional file 1: of Comparing diagnostic and prognostic performance of two-gene promoter methylation panels in tissue biopsies and urines of prostate cancer patients

Catarina Moreira-Barbosa (5907095)
Daniela Barros-Silva (4922425)
Pedro Costa-Pinheiro (816456)
Jorge Torres-Ferreira (3764845)
Vera Constâncio (5907098)
Rui Freitas (3764833)
Jorge Oliveira (33493)
Luís Antunes (701921)
Rui Henrique (33490)
Carmen Jerónimo (33496)

October 2018

Table S1. Primer sequences for β-Actin, miR-34b/c, and miR-193b (panel #1). Table S2. Scorpion prime...

Promoter methylation of DNA damage repair (DDR) genes in human tumor entities: RBBP8/CtIP is almost exclusively methylated in bladder cancer

Mijnes, Jolein
Veeck, Juergen
Gaisa, Nadine T.
Burghardt, Eduard
de Ruijter, Tim C.
Gostek, Sonja
Dahl, Edgar
Pfister, David
Schmid, Sebastian C.
Knuchel, Ruth
Rose, Michael

February 2018

Background: Genome-wide studies identified pan-cancer genes and shared biological networks affected ...

Promoter methylation of DNA damage repair (DDR) genes in human tumor entities:<i>RBBP8/CtIP</i> is almost exclusively methylated in bladder cancer

Mijnes, Jolein
Veeck, Juergen
Gaisa, Nadine T.
Burghardt, Eduard
de Ruijter, Tim C.
Gostek, Sonja
Dahl, Edgar
Pfister, David
Schmid, Sebastian C.
Knuchel, Ruth
Rose, Michael

February 2018

Background: Genome-wide studies identified pan-cancer genes and shared biological networks affected ...

Additional file 1: of Urine cell-based DNA methylation classifier for monitoring bladder cancer

Antoine van der Heijden (2038363)
Lourdes Mengual (95546)
Mercedes Ingelmo-Torres (3488972)
Juan Lozano (3488975)
Cindy van Rijt-van de Westerlo (5314490)
Montserrat Baixauli (5314496)
Bogdan Geavlete (5314493)
Cristian Moldoveanud (5314478)
Cosmin Ene (5314487)
Colin Dinney (188670)
Bogdan Czerniak (111162)
Jack Schalken (3964190)
Lambertus Kiemeney (5314484)
Maria Ribal (5314475)
J. Witjes (5314481)
Antonio Alcaraz (95550)

May 2018

Figure S1. Flowchart of the entire study. A total of seven hypermethylated genes, differentially exp...

Additional file 1: of Integrated analyses of multi-omics reveal global patterns of methylation and hydroxymethylation and screen the tumor suppressive roles of HADHB in colorectal cancer

Yimin Zhu (101874)
Hanlin Lu (2925378)
Dandan Zhang (228849)
Meiyan Li (441468)
Xiaohui Sun (520181)
Ledong Wan (1947580)
Dan Yu (214174)
Yiping Tian (4908259)
Hongchuan Jin (194460)
Aifen Lin (3504350)
Fei Gao (29262)
Maode Lai (15338)

March 2018

Table S1. The basic characteristics of six patients of colorectal cancer. Table S2. Summary of MeDIP...

Additional file 1: of The associations of DNA methylation alterations in oxidative stress-related genes with cancer incidence and mortality outcomes: a population-based cohort study

Xīn Gào (6262232)
Yan Zhang (8098)
Barbara Burwinkel (146479)
Yang Xuan (419293)
Bernd Holleczek (287845)
Hermann Brenner (63649)
Ben Schöttker (300688)

January 2019

Table S1. 519 genes coding for proteins involved in pathways from oxidative stress to cancer. Table ...

Additional file 9: of Urine cell-based DNA methylation classifier for monitoring bladder cancer

Antoine van der Heijden (2038363)
Lourdes Mengual (95546)
Mercedes Ingelmo-Torres (3488972)
Juan Lozano (3488975)
Cindy van Rijt-van de Westerlo (5314490)
Montserrat Baixauli (5314496)
Bogdan Geavlete (5314493)
Cristian Moldoveanud (5314478)
Cosmin Ene (5314487)
Colin Dinney (188670)
Bogdan Czerniak (111162)
Jack Schalken (3964190)
Lambertus Kiemeney (5314484)
Maria Ribal (5314475)
J. Witjes (5314481)
Antonio Alcaraz (95550)

May 2018

Figure S6. DNA methylation profiles for bladder cancer and control tissue samples for the three-gene...

Additional file 8: of Urine cell-based DNA methylation classifier for monitoring bladder cancer

Antoine van der Heijden (2038363)
Lourdes Mengual (95546)
Mercedes Ingelmo-Torres (3488972)
Juan Lozano (3488975)
Cindy van Rijt-van de Westerlo (5314490)
Montserrat Baixauli (5314496)
Bogdan Geavlete (5314493)
Cristian Moldoveanud (5314478)
Cosmin Ene (5314487)
Colin Dinney (188670)
Bogdan Czerniak (111162)
Jack Schalken (3964190)
Lambertus Kiemeney (5314484)
Maria Ribal (5314475)
J. Witjes (5314481)
Antonio Alcaraz (95550)

May 2018

Figure S5. Flow diagram of participants in the cross-sectional study according a) to the three-gene ...

Ahrim Youn (4606252)
Kyung In Kim (47502)
Raul Rabadan (88130)
Benjamin Tycko (237065)
Yufeng Shen (239573)
Shuang Wang (46453)

November 2018

Table S6. Number of tumor samples with mutations in each of the 21 chromatin regulator genes in list...

Additional file 12: of Promoter methylation of DNA damage repair (DDR) genes in human tumor entities: RBBP8/CtIP is almost exclusively methylated in bladder cancer

Jolein Mijnes (3155121)
JĂźrgen Veeck (3777349)
Nadine Gaisa (4831452)
Eduard Burghardt (4831449)
Tim de Ruijter (4831455)
Sonja Gostek (4831458)
Edgar Dahl (42758)
David Pfister (2570215)
Sebastian Schmid (775115)
Ruth KnĂźchel (3777352)
Michael Rose (321021)

February 2018

This dataset illustrates a summary of the TCGA samples used in this study. (XLS 27Â kb

Additional file 2: of Promoter methylation of DNA damage repair (DDR) genes in human tumor entities: RBBP8/CtIP is almost exclusively methylated in bladder cancer

Jolein Mijnes (3155121)
JĂźrgen Veeck (3777349)
Nadine Gaisa (4831452)
Eduard Burghardt (4831449)
Tim de Ruijter (4831455)
Sonja Gostek (4831458)
Edgar Dahl (42758)
David Pfister (2570215)
Sebastian Schmid (775115)
Ruth KnĂźchel (3777352)
Michael Rose (321021)

February 2018

Detailed frequency of DNAm of BRCA1, MGMT, and ERCC1 across cancer entities and corresponding normal...

Additional file 13: of Promoter methylation of DNA damage repair (DDR) genes in human tumor entities: RBBP8/CtIP is almost exclusively methylated in bladder cancer

Jolein Mijnes (3155121)
JĂźrgen Veeck (3777349)
Nadine Gaisa (4831452)
Eduard Burghardt (4831449)
Tim de Ruijter (4831455)
Sonja Gostek (4831458)
Edgar Dahl (42758)
David Pfister (2570215)
Sebastian Schmid (775115)
Ruth KnĂźchel (3777352)
Michael Rose (321021)

February 2018

Illustrating the definition of probe sets near a TSS using three different genes (RBBP8, MGMT, and L...

Additional file 1: Table S1. of Clinical significance of CDH13 promoter methylation as a biomarker for bladder cancer: a meta-analysis

Feng Chen (25347)
Tao Huang (110613)
Yu Ren (428662)
Junjun Wei (3543962)
Zhongguan Lou (3543959)
Xue Wang (102830)
Xiaoxiao Fan (680758)
Yirun Chen (3543968)
Guobin Weng (3543965)
Xuping Yao (3543971)

August 2016

Eggerâs funnel plot of the publication bias test for CDH13 methylation. (DOCX 21Â kb

Additional file 1: of Comparing diagnostic and prognostic performance of two-gene promoter methylation panels in tissue biopsies and urines of prostate cancer patients

Catarina Moreira-Barbosa (5907095)
Daniela Barros-Silva (4922425)
Pedro Costa-Pinheiro (816456)
Jorge Torres-Ferreira (3764845)
Vera Constâncio (5907098)
Rui Freitas (3764833)
Jorge Oliveira (33493)
Luís Antunes (701921)
Rui Henrique (33490)
Carmen Jerónimo (33496)

October 2018

Table S1. Primer sequences for β-Actin, miR-34b/c, and miR-193b (panel #1). Table S2. Scorpion prime...

Promoter methylation of DNA damage repair (DDR) genes in human tumor entities: RBBP8/CtIP is almost exclusively methylated in bladder cancer

Mijnes, Jolein
Veeck, Juergen
Gaisa, Nadine T.
Burghardt, Eduard
de Ruijter, Tim C.
Gostek, Sonja
Dahl, Edgar
Pfister, David
Schmid, Sebastian C.
Knuchel, Ruth
Rose, Michael

February 2018

Background: Genome-wide studies identified pan-cancer genes and shared biological networks affected ...

Promoter methylation of DNA damage repair (DDR) genes in human tumor entities:<i>RBBP8/CtIP</i> is almost exclusively methylated in bladder cancer

Mijnes, Jolein
Veeck, Juergen
Gaisa, Nadine T.
Burghardt, Eduard
de Ruijter, Tim C.
Gostek, Sonja
Dahl, Edgar
Pfister, David
Schmid, Sebastian C.
Knuchel, Ruth
Rose, Michael

February 2018

Background: Genome-wide studies identified pan-cancer genes and shared biological networks affected ...

Additional file 1: of Urine cell-based DNA methylation classifier for monitoring bladder cancer

Antoine van der Heijden (2038363)
Lourdes Mengual (95546)
Mercedes Ingelmo-Torres (3488972)
Juan Lozano (3488975)
Cindy van Rijt-van de Westerlo (5314490)
Montserrat Baixauli (5314496)
Bogdan Geavlete (5314493)
Cristian Moldoveanud (5314478)
Cosmin Ene (5314487)
Colin Dinney (188670)
Bogdan Czerniak (111162)
Jack Schalken (3964190)
Lambertus Kiemeney (5314484)
Maria Ribal (5314475)
J. Witjes (5314481)
Antonio Alcaraz (95550)

May 2018

Figure S1. Flowchart of the entire study. A total of seven hypermethylated genes, differentially exp...

Additional file 1: of Integrated analyses of multi-omics reveal global patterns of methylation and hydroxymethylation and screen the tumor suppressive roles of HADHB in colorectal cancer

Yimin Zhu (101874)
Hanlin Lu (2925378)
Dandan Zhang (228849)
Meiyan Li (441468)
Xiaohui Sun (520181)
Ledong Wan (1947580)
Dan Yu (214174)
Yiping Tian (4908259)
Hongchuan Jin (194460)
Aifen Lin (3504350)
Fei Gao (29262)
Maode Lai (15338)

March 2018

Table S1. The basic characteristics of six patients of colorectal cancer. Table S2. Summary of MeDIP...

Additional file 1: of The associations of DNA methylation alterations in oxidative stress-related genes with cancer incidence and mortality outcomes: a population-based cohort study

Xīn Gào (6262232)
Yan Zhang (8098)
Barbara Burwinkel (146479)
Yang Xuan (419293)
Bernd Holleczek (287845)
Hermann Brenner (63649)
Ben Schöttker (300688)

January 2019

Table S1. 519 genes coding for proteins involved in pathways from oxidative stress to cancer. Table ...

Additional file 9: of Urine cell-based DNA methylation classifier for monitoring bladder cancer

Antoine van der Heijden (2038363)
Lourdes Mengual (95546)
Mercedes Ingelmo-Torres (3488972)
Juan Lozano (3488975)
Cindy van Rijt-van de Westerlo (5314490)
Montserrat Baixauli (5314496)
Bogdan Geavlete (5314493)
Cristian Moldoveanud (5314478)
Cosmin Ene (5314487)
Colin Dinney (188670)
Bogdan Czerniak (111162)
Jack Schalken (3964190)
Lambertus Kiemeney (5314484)
Maria Ribal (5314475)
J. Witjes (5314481)
Antonio Alcaraz (95550)

May 2018

Figure S6. DNA methylation profiles for bladder cancer and control tissue samples for the three-gene...

Additional file 8: of Urine cell-based DNA methylation classifier for monitoring bladder cancer

Antoine van der Heijden (2038363)
Lourdes Mengual (95546)
Mercedes Ingelmo-Torres (3488972)
Juan Lozano (3488975)
Cindy van Rijt-van de Westerlo (5314490)
Montserrat Baixauli (5314496)
Bogdan Geavlete (5314493)
Cristian Moldoveanud (5314478)
Cosmin Ene (5314487)
Colin Dinney (188670)
Bogdan Czerniak (111162)
Jack Schalken (3964190)
Lambertus Kiemeney (5314484)
Maria Ribal (5314475)
J. Witjes (5314481)
Antonio Alcaraz (95550)

May 2018

Figure S5. Flow diagram of participants in the cross-sectional study according a) to the three-gene ...

Ahrim Youn (4606252)
Kyung In Kim (47502)
Raul Rabadan (88130)
Benjamin Tycko (237065)
Yufeng Shen (239573)
Shuang Wang (46453)

November 2018

Table S6. Number of tumor samples with mutations in each of the 21 chromatin regulator genes in list...

Additional file 6: of Promoter methylation of DNA damage repair (DDR) genes in human tumor entities: RBBP8/CtIP is almost exclusively methylated in bladder cancer

Abstract

Extracted data

Additional file 6: of Promoter methylation of DNA damage repair (DDR) genes in human tumor entities: RBBP8/CtIP is almost exclusively methylated in bladder cancer

Abstract

Extracted data

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