Supplemental Figure S1. A. Multidimensional scaling (MDS) plot to visualize the level of similarity among the eight samples (four GFP+ and four GFP-) analyzed by RNA-seq. B. Average log counts per million (CPM) as a function of biological coefficient of variation (BCV), indicating a trend in dispersion associated with expression. C. Smear plot highlighting (red) differentially expressed transcripts at FDR <0.05. Table S1. Transcripts detected as significantly upregulated (p <0.01) in GFP+ vs. GFP- retinal cells of xops:eGFP zebrafish (“rod enriched”), and also detected as significantly upregulated (p <0.01) in WT vs. xops:mCFP whole retinas. (DOCX 262 kb
Figure S4. FACS gating strategy used to collect EGFP positive cells from a clutch of Tg(fli1a:EGFP) ...
Duct-specific genes listed by decreased expression level. We found 293 genes corresponding to the fo...
Differentially expressed genes in BBS model. All genes exhibiting significant changes in bbs1-deplet...
Figure S1. A–A”. To assess co-label of mpeg1:GFP and mpeg1:mCherry transgenes in retina, double tran...
Müller glial apical processes provide scaffolding for differentiating photoreceptor cells. 3D–recons...
Intensity distributions per type. A) Left panel: top 10 highest gene expression intensities per type...
Volcano plot of differential gene expression in zebrafish retina after optic nerve crush. Each probe...
Deletion mutagenesis of the RH2-LCR in the RH2-1/GFP-PAC. Figure S2. Simultaneous recapitulation of ...
Background: Adult zebrafish are capable of photoreceptor (PR) regeneration following acute phototoxi...
Background: Adult zebrafish are capable of photoreceptor (PR) regeneration following acute phototoxi...
Figure S2. RT-qPCR confirms tissue specific gene expression in tissue specific sorted cells. (A) Fro...
Background: Adult zebrafish are capable of photoreceptor (PR) regeneration following acute phototoxi...
Induction of Rhodopsin::GFP reporter by OC1-EnR and L-Maf. Retinas were electroporated with UbiC::Td...
qRT-PCR retinal gene expression results during development in normal, xlpra2, rcd1, and erd. Statist...
Abstract Background The purpose of this study was to identify transcripts of retinal rod photorecept...
Figure S4. FACS gating strategy used to collect EGFP positive cells from a clutch of Tg(fli1a:EGFP) ...
Duct-specific genes listed by decreased expression level. We found 293 genes corresponding to the fo...
Differentially expressed genes in BBS model. All genes exhibiting significant changes in bbs1-deplet...
Figure S1. A–A”. To assess co-label of mpeg1:GFP and mpeg1:mCherry transgenes in retina, double tran...
Müller glial apical processes provide scaffolding for differentiating photoreceptor cells. 3D–recons...
Intensity distributions per type. A) Left panel: top 10 highest gene expression intensities per type...
Volcano plot of differential gene expression in zebrafish retina after optic nerve crush. Each probe...
Deletion mutagenesis of the RH2-LCR in the RH2-1/GFP-PAC. Figure S2. Simultaneous recapitulation of ...
Background: Adult zebrafish are capable of photoreceptor (PR) regeneration following acute phototoxi...
Background: Adult zebrafish are capable of photoreceptor (PR) regeneration following acute phototoxi...
Figure S2. RT-qPCR confirms tissue specific gene expression in tissue specific sorted cells. (A) Fro...
Background: Adult zebrafish are capable of photoreceptor (PR) regeneration following acute phototoxi...
Induction of Rhodopsin::GFP reporter by OC1-EnR and L-Maf. Retinas were electroporated with UbiC::Td...
qRT-PCR retinal gene expression results during development in normal, xlpra2, rcd1, and erd. Statist...
Abstract Background The purpose of this study was to identify transcripts of retinal rod photorecept...
Figure S4. FACS gating strategy used to collect EGFP positive cells from a clutch of Tg(fli1a:EGFP) ...
Duct-specific genes listed by decreased expression level. We found 293 genes corresponding to the fo...
Differentially expressed genes in BBS model. All genes exhibiting significant changes in bbs1-deplet...