Automated Morphology Analysis of Nanoparticles

The functional properties of nanoparticles highly depend on the surface morphology of the particles, so precise measurements of a particle's morphology enable reliable characterizing of the nanoparticle's properties. Obtaining the measurements requires image analysis of electron microscopic pictures of nanoparticles. Today's labor-intensive image analysis of electron micrographs of nanoparticles is a significant bottleneck for efficient material characterization. The objective of this dissertation is to develop automated morphology analysis methods. Morphology analysis is comprised of three tasks: separate individual particles from an agglomerate of overlapping nano-objects (image segmentation); infer the particle's missing contours (shape inference); and ultimately, classify the particles by shape based on their complete contours (shape classification). Two approaches are proposed in this dissertation: the divide-and-conquer approach and the convex shape analysis approach. The divide-and-conquer approach solves each task separately, taking less than one minute to complete the required analysis, even for the largest-sized micrograph. However, its separating capability of particle overlaps is limited, meaning that it is able to split only touching particles. The convex shape analysis approach solves shape inference and classification simultaneously for better accuracy, but it requires more computation time, ten minutes for the biggest-sized electron micrograph. However, with a little sacrifice of time efficiency, the second approach achieves far superior separation than the divide-and-conquer approach, and it handles the chain-linked structure of particle overlaps well. The capabilities of the two proposed methods cannot be substituted by generic image processing and bio-imaging methods. This is due to the unique features that the electron microscopic pictures of nanoparticles have, including special particle overlap structures, and large number of particles to be processed. The application of the proposed methods to real electron microscopic pictures showed that the two proposed methods were more capable of extracting the morphology information than the state-of-the-art methods. When nanoparticles do not have many overlaps, the divide-and-conquer approach performed adequately. When nanoparticles have many overlaps, forming chain-linked clusters, the convex shape analysis approach performed much better than the state-of-the-art alternatives in bio-imaging. The author believes that the capabilities of the proposed methods expedite the morphology characterization process of nanoparticles. The author further conjectures that the technical generality of the proposed methods could even be a competent alternative to the current methods analyzing general overlapping convex-shaped objects other than nanoparticles