Figure 1 from: Blagoderov V, Brake I, Georgiev T, Penev L, Roberts D, Ryrcroft S, Scott B, Agosti D, Catapano T, Smith V (2010) Streamlining taxonomic publication: a working example with Scratchpads and ZooKeys. ZooKeys 50: 17-28. https://doi.org/10.3897/zookeys.50.539

Figure 2 from: Senderov V, Georgiev T, Penev L (2016) Online direct import of specimen records into manuscripts and automatic creation of data papers from biological databases . Research Ideas and Outcomes 2: e10617. https://doi.org/10.3897/rio.2.e10617

Senderov, Viktor
Georgiev, Teodor
Penev, Lyubomir

September 2016

Figure 2 - This fictionalized workflow presents the flow of information content of biodiver...

Figure 1 from: Martellos S, Ukosich L, Avian M (2016) JellyWeb: an interactive information system on Scyphozoa, Cubozoa and Staurozoa. ZooKeys 554: 1-25. https://doi.org/10.3897/zookeys.554.6745

Martellos, Stefano
Ukosich, Luca
Avian, Massimo

January 2016

Figure 1 - Multi-entry interface. The multi-entry interface allows to combine the states ...

Scratchpads Publication Module: A paradigm shift in publishing

Laurence Livermore (100501)

July 2013

<p>An introduction to the new Publication Module in Scratchpads which allows authors to assemble a f...

Figure 1 from: Penev L, Kress W, Knapp S, Li D, Renner S (2010) Fast, linked, and open – the future of taxonomic publishing for plants: launching the journal PhytoKeys. PhytoKeys 1: 1-14. https://doi.org/10.3897/phytokeys.1.642

Penev, Lyubomir
Kress, W. John
Knapp, Sandra
Li, De-Zhu
Renner, Susanne

November 2010

Figure 1 - Editorial process in PhytoKeys based on XML mark up workflow and extensive internal and e...

Streamlining taxonomic publication: a working example with Scratchpads and ZooKeys 17 Streamlining taxonomic publication: a working example with Scratchpads and

Vladimir Blagoderov
Irina Brake
Teodor Georgiev
Lyubomir Penev
Dave Roberts
Simon Rycroft
Ben Scott
Donat Agosti
Terrence Catapano

July 2015

We describe a method to publish nomenclatural acts described in taxonomic websites (Scratchpads) tha...

Streamlining taxonomic publication: a working example with Scratchpads and ZooKeys

Blagoderov, Vladimir
Brake, Irina
Georgiev, Teodor
Penev, Lyubomir
Roberts, David
Ryrcroft, Simon
Scott, Ben
Agosti, Donat
Catapano, Terry
Smith, Vincent

June 2010

We describe a method to publish nomenclatural acts described in taxonomic websites (Scratchpads) tha...

Figure 2 from: Pilsk SC, Kalfatovic MR, Richard JM (2016) Unlocking Index Animalium: From paper slips to bytes and bits. In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 153–171. https://doi.org/10.3897/zookeys.550.9673

Pilsk, Suzanne C.
Kalfatovic, Martin R.
Richard, Joel M.

January 2016

Figure 2 - Example of the first page of the first bibliography (Sherborn. Index Animalium...

Figure 1 from: Smith V, Georgiev T, Stoev P, Biserkov J, Miller J, Livermore L, Baker E, Mietchen D, Couvreur T, Mueller G, Dikow T, Helgen K, Frank J, Agosti D, Roberts D, Penev L (2013) Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal. Biodiversity Data Journal 1: e995. https://doi.org/10.3897/BDJ.1.e995

Smith, Vincent
Georgiev, Teodor
Stoev, Pavel
Biserkov, Jordan
Miller, Jeremy
Livermore, Laurence
Baker, Edward
Mietchen, Daniel
Couvreur, Thomas
Mueller, Gregory
Dikow, Torsten
Helgen, Kristofer M.
Frank, Jiři
Agosti, Donat
Roberts, David
Penev, Lyubomir

September 2013

Figure 1 - Three-step editorial workflow in the Biodiversity Data Journal: manuscript autho...

Figure 1 from: Gkelis S, Panou M (2016) Capturing biodiversity: linking a cyanobacteria culture collection to the "scratchpads" virtual research environment enhances biodiversity knowledge. Biodiversity Data Journal 4: e7965. https://doi.org/10.3897/BDJ.4.e7965

Gkelis, Spyros
Panou, Manthos

April 2016

Figure 1 - Preview of the "Cyanobacteria culture collection" database collection. The Taxon...

Figure 1 from: Pilsk SC, Kalfatovic MR, Richard JM (2016) Unlocking Index Animalium: From paper slips to bytes and bits. In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 153–171. https://doi.org/10.3897/zookeys.550.9673

Pilsk, Suzanne C.
Kalfatovic, Martin R.
Richard, Joel M.

January 2016

Figure 1 - Page from Index Animalium showing examples of microcitations

Figure 1 from: Lepage D, Vaidya G, Guralnick R (2014) Avibase – a database system for managing and organizing taxonomic concepts. ZooKeys 420: 117-135. https://doi.org/10.3897/zookeys.420.7089

Lepage, Denis
Vaidya, Gaurav
Guralnick, Robert

June 2014

Figure 1 - Simplified schema of Avibase primary tables, The Avibase ID table is the central element ...

Figure 1 from: Nelson G, Paul D, Riccardi G, Mast A (2012) Five task clusters that enable efficient and effective digitization of biological collections. ZooKeys 209: 19-45. https://doi.org/10.3897/zookeys.209.3135

Nelson, Gil
Paul, Deborah
Riccardi, Greg
Mast, Austin

July 2012

Figure 1 - Pre-digitization specimen curation and staging. Preparing barcodes and imaging labels, af...

Figure 1 from: Santos J, Rupino da Cunha P, Sales F (2020) A strategy to digitise natural history collections with limited resources. Biodiversity Data Journal 8: e55959. https://doi.org/10.3897/BDJ.8.e55959

Santos, Joaquim
Rupino da Cunha, Paulo
Sales, Fátima

October 2020

Figure 1 Create taxon name process. This process is called by the main process (Fig. 2) if the full ...

Figure 1 from: Schindel D, Miller S, Trizna M, Graham E, Crane A (2016) The Global Registry of Biodiversity Repositories: A Call for Community Curation. Biodiversity Data Journal 4: e10293. https://doi.org/10.3897/BDJ.4.e10293

Schindel, David
Miller, Scott
Trizna, Michael
Graham, Eileen
Crane, Adele

August 2016

Figure 1 - References to specimens in an article begin with an institutionCode that identif...

Publication and dissemination of datasets in taxonomy: ZooKeys working example

Penev, Lyubomir
Erwin, Terry
Miller, Jeremy
Chavan, Vishwas
Moritz, Tom
Griswold, Charles

May 2009

A concept for data publication and semantic enhancements proposed by ZooKeys and applied in the mile...

Figure 2 from: Senderov V, Georgiev T, Penev L (2016) Online direct import of specimen records into manuscripts and automatic creation of data papers from biological databases . Research Ideas and Outcomes 2: e10617. https://doi.org/10.3897/rio.2.e10617

Senderov, Viktor
Georgiev, Teodor
Penev, Lyubomir

September 2016

Figure 2 - This fictionalized workflow presents the flow of information content of biodiver...

Figure 1 from: Martellos S, Ukosich L, Avian M (2016) JellyWeb: an interactive information system on Scyphozoa, Cubozoa and Staurozoa. ZooKeys 554: 1-25. https://doi.org/10.3897/zookeys.554.6745

Martellos, Stefano
Ukosich, Luca
Avian, Massimo

January 2016

Figure 1 - Multi-entry interface. The multi-entry interface allows to combine the states ...

Scratchpads Publication Module: A paradigm shift in publishing

Laurence Livermore (100501)

July 2013

<p>An introduction to the new Publication Module in Scratchpads which allows authors to assemble a f...

Figure 1 from: Penev L, Kress W, Knapp S, Li D, Renner S (2010) Fast, linked, and open – the future of taxonomic publishing for plants: launching the journal PhytoKeys. PhytoKeys 1: 1-14. https://doi.org/10.3897/phytokeys.1.642

Penev, Lyubomir
Kress, W. John
Knapp, Sandra
Li, De-Zhu
Renner, Susanne

November 2010

Figure 1 - Editorial process in PhytoKeys based on XML mark up workflow and extensive internal and e...

Streamlining taxonomic publication: a working example with Scratchpads and ZooKeys 17 Streamlining taxonomic publication: a working example with Scratchpads and

Vladimir Blagoderov
Irina Brake
Teodor Georgiev
Lyubomir Penev
Dave Roberts
Simon Rycroft
Ben Scott
Donat Agosti
Terrence Catapano

July 2015

We describe a method to publish nomenclatural acts described in taxonomic websites (Scratchpads) tha...

Streamlining taxonomic publication: a working example with Scratchpads and ZooKeys

Blagoderov, Vladimir
Brake, Irina
Georgiev, Teodor
Penev, Lyubomir
Roberts, David
Ryrcroft, Simon
Scott, Ben
Agosti, Donat
Catapano, Terry
Smith, Vincent

June 2010

We describe a method to publish nomenclatural acts described in taxonomic websites (Scratchpads) tha...

Figure 2 from: Pilsk SC, Kalfatovic MR, Richard JM (2016) Unlocking Index Animalium: From paper slips to bytes and bits. In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 153–171. https://doi.org/10.3897/zookeys.550.9673

Pilsk, Suzanne C.
Kalfatovic, Martin R.
Richard, Joel M.

January 2016

Figure 2 - Example of the first page of the first bibliography (Sherborn. Index Animalium...

Figure 1 from: Smith V, Georgiev T, Stoev P, Biserkov J, Miller J, Livermore L, Baker E, Mietchen D, Couvreur T, Mueller G, Dikow T, Helgen K, Frank J, Agosti D, Roberts D, Penev L (2013) Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal. Biodiversity Data Journal 1: e995. https://doi.org/10.3897/BDJ.1.e995

Smith, Vincent
Georgiev, Teodor
Stoev, Pavel
Biserkov, Jordan
Miller, Jeremy
Livermore, Laurence
Baker, Edward
Mietchen, Daniel
Couvreur, Thomas
Mueller, Gregory
Dikow, Torsten
Helgen, Kristofer M.
Frank, Jiři
Agosti, Donat
Roberts, David
Penev, Lyubomir

September 2013

Figure 1 - Three-step editorial workflow in the Biodiversity Data Journal: manuscript autho...

Figure 1 from: Gkelis S, Panou M (2016) Capturing biodiversity: linking a cyanobacteria culture collection to the "scratchpads" virtual research environment enhances biodiversity knowledge. Biodiversity Data Journal 4: e7965. https://doi.org/10.3897/BDJ.4.e7965

Gkelis, Spyros
Panou, Manthos

April 2016

Figure 1 - Preview of the "Cyanobacteria culture collection" database collection. The Taxon...

Figure 1 from: Pilsk SC, Kalfatovic MR, Richard JM (2016) Unlocking Index Animalium: From paper slips to bytes and bits. In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 153–171. https://doi.org/10.3897/zookeys.550.9673

Pilsk, Suzanne C.
Kalfatovic, Martin R.
Richard, Joel M.

January 2016

Figure 1 - Page from Index Animalium showing examples of microcitations

Figure 1 from: Lepage D, Vaidya G, Guralnick R (2014) Avibase – a database system for managing and organizing taxonomic concepts. ZooKeys 420: 117-135. https://doi.org/10.3897/zookeys.420.7089

Lepage, Denis
Vaidya, Gaurav
Guralnick, Robert

June 2014

Figure 1 - Simplified schema of Avibase primary tables, The Avibase ID table is the central element ...

Figure 1 from: Nelson G, Paul D, Riccardi G, Mast A (2012) Five task clusters that enable efficient and effective digitization of biological collections. ZooKeys 209: 19-45. https://doi.org/10.3897/zookeys.209.3135

Nelson, Gil
Paul, Deborah
Riccardi, Greg
Mast, Austin

July 2012

Figure 1 - Pre-digitization specimen curation and staging. Preparing barcodes and imaging labels, af...

Figure 1 from: Santos J, Rupino da Cunha P, Sales F (2020) A strategy to digitise natural history collections with limited resources. Biodiversity Data Journal 8: e55959. https://doi.org/10.3897/BDJ.8.e55959

Santos, Joaquim
Rupino da Cunha, Paulo
Sales, Fátima

October 2020

Figure 1 Create taxon name process. This process is called by the main process (Fig. 2) if the full ...

Figure 1 from: Schindel D, Miller S, Trizna M, Graham E, Crane A (2016) The Global Registry of Biodiversity Repositories: A Call for Community Curation. Biodiversity Data Journal 4: e10293. https://doi.org/10.3897/BDJ.4.e10293

Schindel, David
Miller, Scott
Trizna, Michael
Graham, Eileen
Crane, Adele

August 2016

Figure 1 - References to specimens in an article begin with an institutionCode that identif...

Publication and dissemination of datasets in taxonomy: ZooKeys working example

Penev, Lyubomir
Erwin, Terry
Miller, Jeremy
Chavan, Vishwas
Moritz, Tom
Griswold, Charles

May 2009

A concept for data publication and semantic enhancements proposed by ZooKeys and applied in the mile...

Figure 2 from: Senderov V, Georgiev T, Penev L (2016) Online direct import of specimen records into manuscripts and automatic creation of data papers from biological databases . Research Ideas and Outcomes 2: e10617. https://doi.org/10.3897/rio.2.e10617

Senderov, Viktor
Georgiev, Teodor
Penev, Lyubomir

September 2016

Figure 2 - This fictionalized workflow presents the flow of information content of biodiver...

Figure 1 from: Martellos S, Ukosich L, Avian M (2016) JellyWeb: an interactive information system on Scyphozoa, Cubozoa and Staurozoa. ZooKeys 554: 1-25. https://doi.org/10.3897/zookeys.554.6745

Martellos, Stefano
Ukosich, Luca
Avian, Massimo

January 2016

Figure 1 - Multi-entry interface. The multi-entry interface allows to combine the states ...

Scratchpads Publication Module: A paradigm shift in publishing

Laurence Livermore (100501)

July 2013

<p>An introduction to the new Publication Module in Scratchpads which allows authors to assemble a f...

Figure 1 from: Blagoderov V, Brake I, Georgiev T, Penev L, Roberts D, Ryrcroft S, Scott B, Agosti D, Catapano T, Smith V (2010) Streamlining taxonomic publication: a working example with Scratchpads and ZooKeys. ZooKeys 50: 17-28. https://doi.org/10.3897/zookeys.50.539

Abstract

Extracted data

Figure 1 from: Blagoderov V, Brake I, Georgiev T, Penev L, Roberts D, Ryrcroft S, Scott B, Agosti D, Catapano T, Smith V (2010) Streamlining taxonomic publication: a working example with Scratchpads and ZooKeys. ZooKeys 50: 17-28. https://doi.org/10.3897/zookeys.50.539

Abstract

Extracted data

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