ISA-tools/isa-specs: ISA Model and Serialization Specifications 1.0

The First RSBI (ISA-TAB) Workshop:“Can a Simple Format Work for Complex Studies?”

Sansone, Susanna-Assunta
Rocca-Serra, Philippe
Brandizi, Marco
Brazma, Alvis
Field, Dawn
Fostel, Jennifer
Garrow, Andrew G.
Gilbert, Jack
Goodsaid, Federico
Hardy, Nigel
Jones, Phil
Lister, Allyson
Miller, Michael
Morrison, Norman
Rayner, Tim
Sklyar, Nataliya
Taylor, Chris F.
Tong, Weida
Warner, Guy
Wiemann, Stefan

June 2008

This article summarizes the motivation for, and the proceedings of, the first ISA-TAB workshop held ...

Deliverable Report D3.4 ISA-Tab templates for common bioselected set of assays

Nina Jeliazkova, Nikolay Kochev, Vedrin Jeliazkov, Penny Nymark, Pekka Kohonen, Barry Hardy

November 2016

Data preparation is an activity pertinent to most of the NanoSafety Cluster (NSC) projects. The impo...

The first RSBI (ISA-TAB) workshop: "can a simple format work for complex studies?"

Sansone, Susanna-Assunta
Rocca-Serra, Philippe
Brandizi, Marco
Brazma, Alvis
Field, Dawn
Fostel, Jennifer
Garrow, Andrew G.
Gilbert, Jack
Goodsaid, Federico
Hardy, Nigel
Jones, Phil
Lister, Allyson
Miller, Michael
Morrison, Norman
Rayner, Tim
Skylar, Natalia
Taylor, Chris
Tong, Weida
Warner, Guy
Wiemann, Stefan

June 2008

This article summarizes the motivation for, and the proceedings of, the first ISA-TAB workshop held ...

ISA-tools/isa-specs: ISA Model and Serialization Specifications 1.0

David Johnson
Alejandra Gonzalez-Beltran
Philippe Rocca-Serra

October 2016

This document describes ISA (Investigation, Study, Assay), a general purpose framework with which to...

ISA Model and Serialization Specifications 1.0

Sansone, Susanna-Assunta
Rocca-Serra, Philippe
Gonzalez-Beltran, Alejandra
Johnson, David
ISA Community

October 2016

This document describes ISA (Investigation, Study, Assay), a general purpose framework with which to...

Specification documentation: ISA-TAB 1.0

Rocca-Serra, Philippe
Sansone, Susanna-Assunta
Brandizi, Marco

January 2009

This document describes ISA-TAB, a general purpose framework with which to capture and communicate t...

Specification documentation: release candidate 1, ISA-TAB 1.0

Rocca-Serra, Philippe
Sansone, Susanna-Assunta
Brandizi, Marco

November 2008

This document describes ISA-TAB, a general purpose framework with which to capture and communicate t...

ISA API: an open platform for interoperable life science experimental metadata

Johnson, D
Batista, D
Cochrane, K
Davey, RP
Etuk, A
Gonzalez-Beltran, A
Haug, K
Izzo, M
Larralde, M
Lawson, TN
Minotto, A
Moreno, P
Nainala, VC
O'Donovan, C
Pireddu, L
Roger, P
Shaw, F
Steinbeck, C
Weber, RJM
Sansone, S-A
Rocca-Serra, P

January 2021

The Investigation/Study/Assay (ISA) Metadata Framework is an established and widely used set of open...

ISA API : An open platform for interoperable life science experimental metadata

Johnson, David
Batista, Dominique
Cochrane, Keeva
Davey, Robert P.
Etuk, Anthony
Gonzalez-Beltran, Alejandra
Haug, Kenneth
Izzo, Massimiliano
Larralde, Martin
Lawson, Thomas N.
Minotto, Alice
Moreno, Pablo
Nainala, Venkata Chandrasekhar
O'Donovan, Claire
Pireddu, Luca
Roger, Pierrick
Shaw, Felix
Steinbeck, Christoph
Weber, Ralf J. M.
Sansone, Susanna-Assunta
Rocca-Serra, Philippe

January 2021

Background. The Investigation/Study/Assay (ISA) Metadata Framework is an established and widely used...

AltamISA: a Python API for ISA-Tab files

Mathias Kuhring
Mikko Nieminen
Jennifer Kirwan
Dieter Beule
Manuel Holtgrewe

August 2019

AltamISA is a Python library for reading, validating, representing and writing the ISA-Tab file form...

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level

Rocca-Serra, P.
Brandizi, M.
Maguire, E.
Sklyar, N.
Taylor, C.
Begley, K.
Field, D.
Harris, S.
Hide, W.
Hofmann, O.
Neumann, S.
Sterk, P.
Tong, W.
Sansone, S-A.

August 2010

The first open source software suite for experimentalists and curators that (i) assists in the annot...

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level

Rocca-Serra, P
Brandizi, M
Maguire, E
Sklyar, N
Taylor, C
Begley, K
Field, D
Harris, S
Hide, W
Hofmann, O
Neumann, S
Sterk, P
Tong, W
Sansone, S-A

September 2010

UNLABELLED: The first open source software suite for experimentalists and curators that (i) assists ...

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level.

Rocca-Serra, Philippe
Brandizi, Marco
Maguire, Eamonn
Sklyar, Nataliya
Taylor, Chris
Begley, Kimberly
Field, Dawn
Harris, Stephen
Hide, Winston
Hofmann, Oliver
Neumann, Steffen
Sterk, Peter
Tong, Weida
Sansone, Susanna-Assunta

January 2010

The first open source software suite for experimentalists and curators that (i) assists in the annot...

ISA software suite: supporting standards−compliant experimental annotation and enabling curation at the community level

Philippe Rocca−Serra
Marco Brandizi
Eamonn Maguire
Nataliya Sklyar
Chris Taylor
Kimberly Begley
Dawn Field
Stephen Harris
Winston Hide
Oliver Hofmann
Steffen Neumann
Peter Sterk
Weida Tong
Susanna−Assunta Sansone

January 2010

The first open source software suite for experimentalists and curators that (i) assists in the annot...

The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again.

Alejandra, GB
Steffen, N
Eamonn, M
Susanna−Assunta, S
Philippe, R

January 2014

Background: The ISA-Tab format and software suite have been developed to break the silo effect ind...

The First RSBI (ISA-TAB) Workshop:“Can a Simple Format Work for Complex Studies?”

Sansone, Susanna-Assunta
Rocca-Serra, Philippe
Brandizi, Marco
Brazma, Alvis
Field, Dawn
Fostel, Jennifer
Garrow, Andrew G.
Gilbert, Jack
Goodsaid, Federico
Hardy, Nigel
Jones, Phil
Lister, Allyson
Miller, Michael
Morrison, Norman
Rayner, Tim
Sklyar, Nataliya
Taylor, Chris F.
Tong, Weida
Warner, Guy
Wiemann, Stefan

June 2008

This article summarizes the motivation for, and the proceedings of, the first ISA-TAB workshop held ...

Deliverable Report D3.4 ISA-Tab templates for common bioselected set of assays

Nina Jeliazkova, Nikolay Kochev, Vedrin Jeliazkov, Penny Nymark, Pekka Kohonen, Barry Hardy

November 2016

Data preparation is an activity pertinent to most of the NanoSafety Cluster (NSC) projects. The impo...

The first RSBI (ISA-TAB) workshop: "can a simple format work for complex studies?"

Sansone, Susanna-Assunta
Rocca-Serra, Philippe
Brandizi, Marco
Brazma, Alvis
Field, Dawn
Fostel, Jennifer
Garrow, Andrew G.
Gilbert, Jack
Goodsaid, Federico
Hardy, Nigel
Jones, Phil
Lister, Allyson
Miller, Michael
Morrison, Norman
Rayner, Tim
Skylar, Natalia
Taylor, Chris
Tong, Weida
Warner, Guy
Wiemann, Stefan

June 2008

This article summarizes the motivation for, and the proceedings of, the first ISA-TAB workshop held ...

ISA-tools/isa-specs: ISA Model and Serialization Specifications 1.0

David Johnson
Alejandra Gonzalez-Beltran
Philippe Rocca-Serra

October 2016

This document describes ISA (Investigation, Study, Assay), a general purpose framework with which to...

ISA Model and Serialization Specifications 1.0

Sansone, Susanna-Assunta
Rocca-Serra, Philippe
Gonzalez-Beltran, Alejandra
Johnson, David
ISA Community

October 2016

This document describes ISA (Investigation, Study, Assay), a general purpose framework with which to...

Specification documentation: ISA-TAB 1.0

Rocca-Serra, Philippe
Sansone, Susanna-Assunta
Brandizi, Marco

January 2009

This document describes ISA-TAB, a general purpose framework with which to capture and communicate t...

Specification documentation: release candidate 1, ISA-TAB 1.0

Rocca-Serra, Philippe
Sansone, Susanna-Assunta
Brandizi, Marco

November 2008

This document describes ISA-TAB, a general purpose framework with which to capture and communicate t...

ISA API: an open platform for interoperable life science experimental metadata

Johnson, D
Batista, D
Cochrane, K
Davey, RP
Etuk, A
Gonzalez-Beltran, A
Haug, K
Izzo, M
Larralde, M
Lawson, TN
Minotto, A
Moreno, P
Nainala, VC
O'Donovan, C
Pireddu, L
Roger, P
Shaw, F
Steinbeck, C
Weber, RJM
Sansone, S-A
Rocca-Serra, P

January 2021

The Investigation/Study/Assay (ISA) Metadata Framework is an established and widely used set of open...

ISA API : An open platform for interoperable life science experimental metadata

Johnson, David
Batista, Dominique
Cochrane, Keeva
Davey, Robert P.
Etuk, Anthony
Gonzalez-Beltran, Alejandra
Haug, Kenneth
Izzo, Massimiliano
Larralde, Martin
Lawson, Thomas N.
Minotto, Alice
Moreno, Pablo
Nainala, Venkata Chandrasekhar
O'Donovan, Claire
Pireddu, Luca
Roger, Pierrick
Shaw, Felix
Steinbeck, Christoph
Weber, Ralf J. M.
Sansone, Susanna-Assunta
Rocca-Serra, Philippe

January 2021

Background. The Investigation/Study/Assay (ISA) Metadata Framework is an established and widely used...

AltamISA: a Python API for ISA-Tab files

Mathias Kuhring
Mikko Nieminen
Jennifer Kirwan
Dieter Beule
Manuel Holtgrewe

August 2019

AltamISA is a Python library for reading, validating, representing and writing the ISA-Tab file form...

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level

Rocca-Serra, P.
Brandizi, M.
Maguire, E.
Sklyar, N.
Taylor, C.
Begley, K.
Field, D.
Harris, S.
Hide, W.
Hofmann, O.
Neumann, S.
Sterk, P.
Tong, W.
Sansone, S-A.

August 2010

The first open source software suite for experimentalists and curators that (i) assists in the annot...

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level

Rocca-Serra, P
Brandizi, M
Maguire, E
Sklyar, N
Taylor, C
Begley, K
Field, D
Harris, S
Hide, W
Hofmann, O
Neumann, S
Sterk, P
Tong, W
Sansone, S-A

September 2010

UNLABELLED: The first open source software suite for experimentalists and curators that (i) assists ...

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level.

Rocca-Serra, Philippe
Brandizi, Marco
Maguire, Eamonn
Sklyar, Nataliya
Taylor, Chris
Begley, Kimberly
Field, Dawn
Harris, Stephen
Hide, Winston
Hofmann, Oliver
Neumann, Steffen
Sterk, Peter
Tong, Weida
Sansone, Susanna-Assunta

January 2010

The first open source software suite for experimentalists and curators that (i) assists in the annot...

ISA software suite: supporting standards−compliant experimental annotation and enabling curation at the community level

Philippe Rocca−Serra
Marco Brandizi
Eamonn Maguire
Nataliya Sklyar
Chris Taylor
Kimberly Begley
Dawn Field
Stephen Harris
Winston Hide
Oliver Hofmann
Steffen Neumann
Peter Sterk
Weida Tong
Susanna−Assunta Sansone

January 2010

The first open source software suite for experimentalists and curators that (i) assists in the annot...

The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again.

Alejandra, GB
Steffen, N
Eamonn, M
Susanna−Assunta, S
Philippe, R

January 2014

Background: The ISA-Tab format and software suite have been developed to break the silo effect ind...

The First RSBI (ISA-TAB) Workshop:“Can a Simple Format Work for Complex Studies?”

Sansone, Susanna-Assunta
Rocca-Serra, Philippe
Brandizi, Marco
Brazma, Alvis
Field, Dawn
Fostel, Jennifer
Garrow, Andrew G.
Gilbert, Jack
Goodsaid, Federico
Hardy, Nigel
Jones, Phil
Lister, Allyson
Miller, Michael
Morrison, Norman
Rayner, Tim
Sklyar, Nataliya
Taylor, Chris F.
Tong, Weida
Warner, Guy
Wiemann, Stefan

June 2008

This article summarizes the motivation for, and the proceedings of, the first ISA-TAB workshop held ...

Deliverable Report D3.4 ISA-Tab templates for common bioselected set of assays

Nina Jeliazkova, Nikolay Kochev, Vedrin Jeliazkov, Penny Nymark, Pekka Kohonen, Barry Hardy

November 2016

Data preparation is an activity pertinent to most of the NanoSafety Cluster (NSC) projects. The impo...

The first RSBI (ISA-TAB) workshop: "can a simple format work for complex studies?"

Sansone, Susanna-Assunta
Rocca-Serra, Philippe
Brandizi, Marco
Brazma, Alvis
Field, Dawn
Fostel, Jennifer
Garrow, Andrew G.
Gilbert, Jack
Goodsaid, Federico
Hardy, Nigel
Jones, Phil
Lister, Allyson
Miller, Michael
Morrison, Norman
Rayner, Tim
Skylar, Natalia
Taylor, Chris
Tong, Weida
Warner, Guy
Wiemann, Stefan

June 2008

This article summarizes the motivation for, and the proceedings of, the first ISA-TAB workshop held ...

ISA-tools/isa-specs: ISA Model and Serialization Specifications 1.0

Abstract

Extracted data

ISA-tools/isa-specs: ISA Model and Serialization Specifications 1.0

Abstract

Extracted data

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