We present a novel method for the calculation of the energy density of states D(E) for systems described by classical statistical mechanics. The method builds on an extension of a recently proposed strategy that allows the free energy profile of a canonical system to be recovered within a pre-assigned accuracy,[A. Laio and M. Parrinello, PNAS 2002]. The method allows a good control over the error on the recovered system entropy. This fact is exploited to obtain D(E) more efficiently by combining measurements at different temperatures. The accuracy and efficiency of the method are tested for the two-dimensional Ising model (up to size 50x50) by comparison with both exact results and previous studies. This method is a general one and should b...
Abstract. When studying high-dimensional dynamical systems such as macromolecules, quan-tum systems ...
In classical mechanics, a spatial density of dx/v(x) can be given even though one particle is involv...
With the help of metadynamics it is possible to calculate efficiently the free energy of systems dis...
We present a novel method for the calculation of the energy density of states D(E) for systems descr...
A method for calculating the density of states of a system directly from its trajectory in phase spa...
We present a history-dependent Monte Carlo scheme for the efficient calculation of the free energy o...
© 2016 Author(s). A robust and model free Monte Carlo simulation method is proposed to address the c...
Recently, we have introduced a new method, metadynamics, which is able to sample rarely occurring tr...
We present an optimized approach for the calculation of the density of fully coupled vibrational sta...
By using metadynamics at a temperature T0 we reconstruct the free energy FT0(E,s) as a function of t...
A Bayesian framework is developed to reconstruct the density of states from multiple canonical simul...
We present a novel algorithm to compute the density of states, which is proven to converge to the co...
AbstractA novel method has been implemented to compute the density of states of proteins. A united a...
In Wang–Landau type algorithms, Monte-Carlo updates are performed with respect to the density of sta...
We present a method based on the two-phase thermodynamic model (2PT) to calculate the entropy and fr...
Abstract. When studying high-dimensional dynamical systems such as macromolecules, quan-tum systems ...
In classical mechanics, a spatial density of dx/v(x) can be given even though one particle is involv...
With the help of metadynamics it is possible to calculate efficiently the free energy of systems dis...
We present a novel method for the calculation of the energy density of states D(E) for systems descr...
A method for calculating the density of states of a system directly from its trajectory in phase spa...
We present a history-dependent Monte Carlo scheme for the efficient calculation of the free energy o...
© 2016 Author(s). A robust and model free Monte Carlo simulation method is proposed to address the c...
Recently, we have introduced a new method, metadynamics, which is able to sample rarely occurring tr...
We present an optimized approach for the calculation of the density of fully coupled vibrational sta...
By using metadynamics at a temperature T0 we reconstruct the free energy FT0(E,s) as a function of t...
A Bayesian framework is developed to reconstruct the density of states from multiple canonical simul...
We present a novel algorithm to compute the density of states, which is proven to converge to the co...
AbstractA novel method has been implemented to compute the density of states of proteins. A united a...
In Wang–Landau type algorithms, Monte-Carlo updates are performed with respect to the density of sta...
We present a method based on the two-phase thermodynamic model (2PT) to calculate the entropy and fr...
Abstract. When studying high-dimensional dynamical systems such as macromolecules, quan-tum systems ...
In classical mechanics, a spatial density of dx/v(x) can be given even though one particle is involv...
With the help of metadynamics it is possible to calculate efficiently the free energy of systems dis...