De Novo NGS Data Compression

High-throughput DNA sequence data compression

Zexuan Zhu
Yongpeng Zhang
Zhen Ji
Shan He

January 2013

The exponential growth of high-throughput DNA sequence data has posed great challenges to genomic da...

Handling the data management needs of high-throughput sequencing data: SpeedGene, a compression algorithm for the efficient storage of genetic data

Qiao, Dandi
Yip, Wai-Ki
Lange, Christoph

April 2013

Background: As Next-Generation Sequencing data becomes available, existing hardware environments do ...

Applying hash to zip DNA data

Stojanov, Done

January 2019

Current genomic data compression techniques rely on referent sequence. This means that one sequence...

De Novo NGS Data Compression

Benoit, Gaëtan
Lemaitre, Claire
Rizk, Guillaume
Drezen, Erwan
Lavenier, Dominique

January 2017

International audienceThis chapter deals with the compression of genomic data without reference geno...

Compression of next-generation sequencing data and of DNA digital files

Carpentieri B.

January 2020

The increase in memory and in network traffic used and caused by new sequenced biological data has r...

Data Compression Strategy for Reference-Free Sequencing FASTQ Data

Hsu Mon Lei Aung
Swe Zin Hlaing

November 2017

Today, Next Generation Sequencing (NGS) technologies play a vital role for many research fields such...

Compression of Next-Generation DNA Sequencing Data

Kathareios, G. (author)

August 2014

DNA sequencing is the process of determining the ordered sequence of the four nucleotide bases in a ...

Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph

Benoit, Gaëtan
Lemaitre, Claire
Lavenier, Dominique
Drezen, Erwan
Dayris, Thibault
Uricaru, Raluca
Rizk, Guillaume

September 2015

International audienceData volumes generated by next-generation sequencing (NGS) technologies is now...

Next Generation Sequencing Data and its Compression

Carpentieri B.

January 2019

Over the past few years the amount of digital memory and network traffic used by sequenced biologica...

Scalable Data Structure to Compress Next-Generation Sequencing Files and its Application to Compressive Genomics

Vargas-Perez, Sandino
Saeed, Fahad

October 2017

It is now possible to compress and decompress large-scale Next-Generation Sequencing files taking ad...

BdBG: a bucket-based method for compressing genome sequencing data with dynamic de Bruijn graphs

Rongjie Wang
Junyi Li
Yang Bai
Tianyi Zang
Yadong Wang

October 2018

Dramatic increases in data produced by next-generation sequencing (NGS) technologies demand data com...

Unsupervised learning for high performance compression of genomic data collections

Tang, Tao

January 2021

University of Technology Sydney. Faculty of Engineering and Information Technology.The advanced next...

NP3: A New DNA Compression Algorithm

Paul Gardner-stephen
Greg Knowles

March 2015

Abstract:- NP3 is a nucleotide database compression algorithm which takes advantage of the redundanc...

PROCEEDINGS Open Access Fast lossless compression via cascading Bloom filters

Roye Rozov
Ron Shamir
Eran Halperin

January 2014

Background: Data from large Next Generation Sequencing (NGS) experiments present challenges both in ...

Adaptive efficient compression of genomes

Wandelt Sebastian
Leser Ulf

November 2012

Abstract Modern high-throughput sequencing technologies are able to generate DNA sequences at an ev...

High-throughput DNA sequence data compression

Zexuan Zhu
Yongpeng Zhang
Zhen Ji
Shan He

January 2013

The exponential growth of high-throughput DNA sequence data has posed great challenges to genomic da...

Handling the data management needs of high-throughput sequencing data: SpeedGene, a compression algorithm for the efficient storage of genetic data

Qiao, Dandi
Yip, Wai-Ki
Lange, Christoph

April 2013

Background: As Next-Generation Sequencing data becomes available, existing hardware environments do ...

Applying hash to zip DNA data

Stojanov, Done

January 2019

Current genomic data compression techniques rely on referent sequence. This means that one sequence...

De Novo NGS Data Compression

Benoit, Gaëtan
Lemaitre, Claire
Rizk, Guillaume
Drezen, Erwan
Lavenier, Dominique

January 2017

International audienceThis chapter deals with the compression of genomic data without reference geno...

Compression of next-generation sequencing data and of DNA digital files

Carpentieri B.

January 2020

The increase in memory and in network traffic used and caused by new sequenced biological data has r...

Data Compression Strategy for Reference-Free Sequencing FASTQ Data

Hsu Mon Lei Aung
Swe Zin Hlaing

November 2017

Today, Next Generation Sequencing (NGS) technologies play a vital role for many research fields such...

Compression of Next-Generation DNA Sequencing Data

Kathareios, G. (author)

August 2014

DNA sequencing is the process of determining the ordered sequence of the four nucleotide bases in a ...

Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph

Benoit, Gaëtan
Lemaitre, Claire
Lavenier, Dominique
Drezen, Erwan
Dayris, Thibault
Uricaru, Raluca
Rizk, Guillaume

September 2015

International audienceData volumes generated by next-generation sequencing (NGS) technologies is now...

Next Generation Sequencing Data and its Compression

Carpentieri B.

January 2019

Over the past few years the amount of digital memory and network traffic used by sequenced biologica...

Scalable Data Structure to Compress Next-Generation Sequencing Files and its Application to Compressive Genomics

Vargas-Perez, Sandino
Saeed, Fahad

October 2017

It is now possible to compress and decompress large-scale Next-Generation Sequencing files taking ad...

BdBG: a bucket-based method for compressing genome sequencing data with dynamic de Bruijn graphs

Rongjie Wang
Junyi Li
Yang Bai
Tianyi Zang
Yadong Wang

October 2018

Dramatic increases in data produced by next-generation sequencing (NGS) technologies demand data com...

Unsupervised learning for high performance compression of genomic data collections

Tang, Tao

January 2021

University of Technology Sydney. Faculty of Engineering and Information Technology.The advanced next...

NP3: A New DNA Compression Algorithm

Paul Gardner-stephen
Greg Knowles

March 2015

Abstract:- NP3 is a nucleotide database compression algorithm which takes advantage of the redundanc...

PROCEEDINGS Open Access Fast lossless compression via cascading Bloom filters

Roye Rozov
Ron Shamir
Eran Halperin

January 2014

Background: Data from large Next Generation Sequencing (NGS) experiments present challenges both in ...

Adaptive efficient compression of genomes

Wandelt Sebastian
Leser Ulf

November 2012

Abstract Modern high-throughput sequencing technologies are able to generate DNA sequences at an ev...

High-throughput DNA sequence data compression

Zexuan Zhu
Yongpeng Zhang
Zhen Ji
Shan He

January 2013

The exponential growth of high-throughput DNA sequence data has posed great challenges to genomic da...

Handling the data management needs of high-throughput sequencing data: SpeedGene, a compression algorithm for the efficient storage of genetic data

Qiao, Dandi
Yip, Wai-Ki
Lange, Christoph

April 2013

Background: As Next-Generation Sequencing data becomes available, existing hardware environments do ...

Applying hash to zip DNA data

Stojanov, Done

January 2019

Current genomic data compression techniques rely on referent sequence. This means that one sequence...

De Novo NGS Data Compression

Abstract

Extracted data

De Novo NGS Data Compression

Abstract

Extracted data

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