The biopolymer collagen is often used as a scaffolding biomaterial in tissue engineering. Like any other biomaterials, the implantation of collagen scaffolds induces a local inflammatory reaction known as a foreign body reaction (FBR). The FBR to collagen scaffolds involves a complex cascade of spatiotemporally regulated and interconnected processes that include cellular infiltration, activation of inflammatory cells, phagocytosis and proteolysis, which ultimately result in the resolution and degradation of the implanted scaffold. Ideally, the degradation rate should match the speed of tissue regeneration. The aim of this thesis was to discover the molecular and cellular mechanisms of degradation of collagen scaffolds in the FBR, which are ...