We investigated the additivity of the solvation free energy of amino acids in homogeneous helices of different length in water and in chloroform. Solvation free energies were computed by multiconfiguration thermodynamic integration involving extended molecular dynamics simulations and by applying the generalized-born surface area solvation model to static helix geometries. The investigation focused on homogeneous peptides composed of uncharged amino acids, where the backbone atoms are kept fixed in an ideal helical conformation. We found nonlinearity especially for short peptides, which does not allow a simple treatment of the interaction of amino acids with their surroundings. For homogeneous peptides longer than five residues, the results...
ABSTRACT: Octanol-to-water solvation free energies of acetyl amino acid amides (Ac-X-amides) [Fauche...
Octanol-to-water solvation free energies of acetyl amino acid amides (Ac-X-amides) [Fauchère, J. L.,...
Biological structure, function and kinetics are fundamentally based on a balance of interactions bet...
peer reviewedWe investigated the additivity of the solvation free energy of amino acids in homogeneo...
peer reviewedSolvation free energies of neutral amino acids in water and in chloroform were computed...
The effects of the aqueous solvent in the conformational preferences of peptides and homopeptides ha...
The ability of the GROMOS96 force field to reproduce partition constants between water and two less ...
We have studied the hydrophobicity of amino acid side chains by computing conditional solvation free...
AbstractMost proteins perform their function in aqueous solution. The interactions with water determ...
In current days, computer simulation is a scientific tool to study material properties. Using comput...
AbstractUnderstanding the solvation of amino acids in biomembranes is an important step to better ex...
Knowledge about the insertion and stabilization of membrane proteins is a key step towards understan...
Using thermodynamic integration, we study the solvation free energy of 18 amino acid side chain equi...
Molecular dynamics studies have been performed on the zwitterionic form of the dipeptide glycine-ala...
Recently, we reported that molecular dynamics (MD) simulations using a coarse-grained (CG) peptide m...
ABSTRACT: Octanol-to-water solvation free energies of acetyl amino acid amides (Ac-X-amides) [Fauche...
Octanol-to-water solvation free energies of acetyl amino acid amides (Ac-X-amides) [Fauchère, J. L.,...
Biological structure, function and kinetics are fundamentally based on a balance of interactions bet...
peer reviewedWe investigated the additivity of the solvation free energy of amino acids in homogeneo...
peer reviewedSolvation free energies of neutral amino acids in water and in chloroform were computed...
The effects of the aqueous solvent in the conformational preferences of peptides and homopeptides ha...
The ability of the GROMOS96 force field to reproduce partition constants between water and two less ...
We have studied the hydrophobicity of amino acid side chains by computing conditional solvation free...
AbstractMost proteins perform their function in aqueous solution. The interactions with water determ...
In current days, computer simulation is a scientific tool to study material properties. Using comput...
AbstractUnderstanding the solvation of amino acids in biomembranes is an important step to better ex...
Knowledge about the insertion and stabilization of membrane proteins is a key step towards understan...
Using thermodynamic integration, we study the solvation free energy of 18 amino acid side chain equi...
Molecular dynamics studies have been performed on the zwitterionic form of the dipeptide glycine-ala...
Recently, we reported that molecular dynamics (MD) simulations using a coarse-grained (CG) peptide m...
ABSTRACT: Octanol-to-water solvation free energies of acetyl amino acid amides (Ac-X-amides) [Fauche...
Octanol-to-water solvation free energies of acetyl amino acid amides (Ac-X-amides) [Fauchère, J. L.,...
Biological structure, function and kinetics are fundamentally based on a balance of interactions bet...