Graphs are used pervasively in computer science as representations of data with a network or relational structure, where the graph structure provides a flexible representation such that there is no fixed dimensionality for objects. However, the analysis of data in this form has proved an elusive problem; for instance, it suffers from the robustness to structural noise. One way to circumvent this problem is to embed the nodes of a graph in a vector space and to study the properties of the point distribution that results from the embedding. This is a problem that arises in a number of areas including manifold learning theory and graph-drawing. In this thesis, our first contribution is to investigate the heat kernel embedding as a route t...