Database update

The cancer genome atlas pan-cancer analysis project

Weinstein, J.
Collisson, E.
Mills, G.
Shaw, K.
Ozenberger, B.
Ellrott, K.
Sander, C.
Stuart, J.
Chang, K.
Creighton, C.
Davis, C.
Donehower, L.
Drummond, J.
Wheeler, D.
Ally, A.
Balasundaram, M.
Birol, I.
Butterfield, Y.
Chu, A.
Chuah, E.
Chun, H.
Dhalla, N.
Guin, R.
Hirst, M.
Hirst, C.
Holt, R.
Jones, S.
Lee, D.
Li, H.
Marra, M.
Mayo, M.
Moore, R.
Mungall, A.
Robertson, A.
Schein, J.
Sipahimalani, P.
Tam, A.
Thiessen, N.
Varhol, Richard
Beroukhim, R.
Bhatt, A.
Brooks, A.
Cherniack, A.
Freeman, S.
Gabriel, S.
Helman, E.
Jung, J.
Meyerson, M.
Ojesina, A.
Pedamallu, C.
Saksena, G.
Schumacher, S.
Tabak, B.
Zack, T.
Lander, E.
Bristow, C.
Hadjipanayis, A.
Haseley, P.
Kucherlapati, R.
Lee, S.
Lee, E.
Luquette, L.
Mahadeshwar, H.
Pantazi, A.
Parfenov, M.
Park, P.
Protopopov, A.
Ren, X.
Santoso, N.
Seidman, J.
Seth, S.
Song, X.
Tang, J.
Xi, R.
Xu, A.
Yang, L.
Zeng, D.
Auman, J.
Balu, S.
Buda, E.

January 2013

The Cancer Genome Atlas (TCGA) Research Network has profiled and analyzed large numbers of human tum...

Cytogenetic resources and information Running title: Databases for cancer cytogenetics *Corresponding authors

de Braekeleer, H
Huret, Jl
Mossafa, H, L
Dessen, P

January 2017

International audienceThe main databases devoted stricto sensu to cancer cytogenetics are the "Mitel...

Pathway and network analysis of more than 2500 whole cancer genomes

Reyna, Matthew A.
Haan, David
Paczkowska, Marta
Verbeke, Lieven P.C.
Vazquez, Miguel
Kahraman, Abdullah
Pulido-Tamayo, Sergio
Barenboim, Jonathan
Wadi, Lina
Dhingra, Priyanka
Shrestha, Raunak
Getz, Gad
Lawrence, Michael S.
Pedersen, Jackob S.
Rubin, Mark A.
Wheeler, David A.
Brunak, Søren
Izarzugaza, Jose M.G.
PCAWG Drivers and Functional Interpretation Working Group
PCAWG Consortium
Deu-Pons, Jordi
Gut, Ivo Glynne
Muiños, Ferran
Mularoni, Loris
Rubio Pérez, Carlota, 1990-
Tamborero Noguera, David

January 2020

The catalog of cancer driver mutations in protein-coding genes has greatly expanded in the past deca...

Database update

Omer An
Vera Pendino
Emanuele Ratti
Marco Gentilini

August 2016

NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genome

NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genomes

An, Omer
Pendino, Vera
D’Antonio, Matteo
Ratti, Emanuele
Gentilini, Marco
Ciccarelli, Francesca D

January 2014

NCG 4.0 is the latest update of the Network of Cancer Genes, a web-based repository of systems-level...

The Network of Cancer Genes (NCG): a comprehensive catalogue of known and candidate cancer genes from cancer sequencing screens

Dimitra Repana
Joel Nulsen
Lisa Dressler
Michele Bortolomeazzi
Santhilata Kuppili Venkata
Aikaterini Tourna
Anna Yakovleva
Tommaso Palmieri
Francesca D. Ciccarelli

January 2019

Abstract The Network of Cancer Genes (NCG) is a manually curated repository of 2372 genes whose soma...

The Network of Cancer Genes (NCG):a comprehensive catalogue of known and candidate cancer genes from cancer sequencing screens

Repana, Dimitra
Nulsen, Joel
Dressler, Lisa
Bortolomeazzi, Michele
Venkata, Santhilata Kuppili
Tourna, Aikaterini
Yakovleva, Anna
Palmieri, Tommaso
Ciccarelli, Francesca D

January 2019

The Network of Cancer Genes (NCG) is a manually curated repository of 2372 genes whose somatic modif...

Network of cancer genes: a web resource to analyze duplicability, orthology and network properties of cancer genes

Adnan S. Syed
Francesca D. Ciccarelli

January 2010

The Network of Cancer Genes (NCG) collects and integrates data on 736 human genes that are mutated i...

Additional file 3: of The Network of Cancer Genes (NCG): a comprehensive catalogue of known and candidate cancer genes from cancer sequencing screens

Dimitra Repana (6173975)
Joel Nulsen (6173978)
Lisa Dressler (6173981)
Michele Bortolomeazzi (6173984)
Santhilata Venkata (6173987)
Aikaterini Tourna (6173990)
Anna Yakovleva (778118)
Tommaso Palmieri (6173993)
Francesca Ciccarelli (6173996)

January 2019

Lists of all cancer genes, known cancer genes, and candidate cancer genes. (XLSX 840 kb

Cancer3D: understanding cancer mutations through protein structures

Eduard Porta-pardo
Thomas Hrabe
Adam Godzik

January 2014

The new era of cancer genomics is providing us with extensive knowledge of mutations and other alter...

Database Update

Re Gattiker
Olivier Collin
Michael Primig

September 2016

GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycl

The Roche Cancer Genome Database 2.0

Klostermann Stefan
Lenhof Hans-Peter
Maisel Daniela
Küntzer Jan
Burtscher Helmut

May 2011

Abstract Background Cancer is a disease of genome alterations that arise through the acquisition of ...

The Cancer Genome Atlas (TCGA) is

Katarzyna Tomczak
Patrycja Czerwińska
Maciej Wiznerowicz

August 2016

a public funded project that aims to catalogue and discover major can-cer-causing genomic alteration...

Genome Databases and Browsers for Cancer

Goyal, M

January 2019

There are at about 200 forms of cancer and its subtypes. Each of these is caused by errors in DNA th...

Cancer Genome Atlas Pan-cancer Analysis Project

Kun ZHANG
Hong WANG

April 2015

Cancer can exhibit different forms depending on the site of origin, cell types, the different forms ...

The cancer genome atlas pan-cancer analysis project

Weinstein, J.
Collisson, E.
Mills, G.
Shaw, K.
Ozenberger, B.
Ellrott, K.
Sander, C.
Stuart, J.
Chang, K.
Creighton, C.
Davis, C.
Donehower, L.
Drummond, J.
Wheeler, D.
Ally, A.
Balasundaram, M.
Birol, I.
Butterfield, Y.
Chu, A.
Chuah, E.
Chun, H.
Dhalla, N.
Guin, R.
Hirst, M.
Hirst, C.
Holt, R.
Jones, S.
Lee, D.
Li, H.
Marra, M.
Mayo, M.
Moore, R.
Mungall, A.
Robertson, A.
Schein, J.
Sipahimalani, P.
Tam, A.
Thiessen, N.
Varhol, Richard
Beroukhim, R.
Bhatt, A.
Brooks, A.
Cherniack, A.
Freeman, S.
Gabriel, S.
Helman, E.
Jung, J.
Meyerson, M.
Ojesina, A.
Pedamallu, C.
Saksena, G.
Schumacher, S.
Tabak, B.
Zack, T.
Lander, E.
Bristow, C.
Hadjipanayis, A.
Haseley, P.
Kucherlapati, R.
Lee, S.
Lee, E.
Luquette, L.
Mahadeshwar, H.
Pantazi, A.
Parfenov, M.
Park, P.
Protopopov, A.
Ren, X.
Santoso, N.
Seidman, J.
Seth, S.
Song, X.
Tang, J.
Xi, R.
Xu, A.
Yang, L.
Zeng, D.
Auman, J.
Balu, S.
Buda, E.

January 2013

The Cancer Genome Atlas (TCGA) Research Network has profiled and analyzed large numbers of human tum...

Cytogenetic resources and information Running title: Databases for cancer cytogenetics *Corresponding authors

de Braekeleer, H
Huret, Jl
Mossafa, H, L
Dessen, P

January 2017

International audienceThe main databases devoted stricto sensu to cancer cytogenetics are the "Mitel...

Pathway and network analysis of more than 2500 whole cancer genomes

Reyna, Matthew A.
Haan, David
Paczkowska, Marta
Verbeke, Lieven P.C.
Vazquez, Miguel
Kahraman, Abdullah
Pulido-Tamayo, Sergio
Barenboim, Jonathan
Wadi, Lina
Dhingra, Priyanka
Shrestha, Raunak
Getz, Gad
Lawrence, Michael S.
Pedersen, Jackob S.
Rubin, Mark A.
Wheeler, David A.
Brunak, Søren
Izarzugaza, Jose M.G.
PCAWG Drivers and Functional Interpretation Working Group
PCAWG Consortium
Deu-Pons, Jordi
Gut, Ivo Glynne
Muiños, Ferran
Mularoni, Loris
Rubio Pérez, Carlota, 1990-
Tamborero Noguera, David

January 2020

The catalog of cancer driver mutations in protein-coding genes has greatly expanded in the past deca...

Database update

Omer An
Vera Pendino
Emanuele Ratti
Marco Gentilini

August 2016

NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genome

NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genomes

An, Omer
Pendino, Vera
D’Antonio, Matteo
Ratti, Emanuele
Gentilini, Marco
Ciccarelli, Francesca D

January 2014

NCG 4.0 is the latest update of the Network of Cancer Genes, a web-based repository of systems-level...

The Network of Cancer Genes (NCG): a comprehensive catalogue of known and candidate cancer genes from cancer sequencing screens

Dimitra Repana
Joel Nulsen
Lisa Dressler
Michele Bortolomeazzi
Santhilata Kuppili Venkata
Aikaterini Tourna
Anna Yakovleva
Tommaso Palmieri
Francesca D. Ciccarelli

January 2019

Abstract The Network of Cancer Genes (NCG) is a manually curated repository of 2372 genes whose soma...

The Network of Cancer Genes (NCG):a comprehensive catalogue of known and candidate cancer genes from cancer sequencing screens

Repana, Dimitra
Nulsen, Joel
Dressler, Lisa
Bortolomeazzi, Michele
Venkata, Santhilata Kuppili
Tourna, Aikaterini
Yakovleva, Anna
Palmieri, Tommaso
Ciccarelli, Francesca D

January 2019

The Network of Cancer Genes (NCG) is a manually curated repository of 2372 genes whose somatic modif...

Network of cancer genes: a web resource to analyze duplicability, orthology and network properties of cancer genes

Adnan S. Syed
Francesca D. Ciccarelli

January 2010

The Network of Cancer Genes (NCG) collects and integrates data on 736 human genes that are mutated i...

Additional file 3: of The Network of Cancer Genes (NCG): a comprehensive catalogue of known and candidate cancer genes from cancer sequencing screens

Dimitra Repana (6173975)
Joel Nulsen (6173978)
Lisa Dressler (6173981)
Michele Bortolomeazzi (6173984)
Santhilata Venkata (6173987)
Aikaterini Tourna (6173990)
Anna Yakovleva (778118)
Tommaso Palmieri (6173993)
Francesca Ciccarelli (6173996)

January 2019

Lists of all cancer genes, known cancer genes, and candidate cancer genes. (XLSX 840 kb

Cancer3D: understanding cancer mutations through protein structures

Eduard Porta-pardo
Thomas Hrabe
Adam Godzik

January 2014

The new era of cancer genomics is providing us with extensive knowledge of mutations and other alter...

Database Update

Re Gattiker
Olivier Collin
Michael Primig

September 2016

GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycl

The Roche Cancer Genome Database 2.0

Klostermann Stefan
Lenhof Hans-Peter
Maisel Daniela
Küntzer Jan
Burtscher Helmut

May 2011

Abstract Background Cancer is a disease of genome alterations that arise through the acquisition of ...

The Cancer Genome Atlas (TCGA) is

Katarzyna Tomczak
Patrycja Czerwińska
Maciej Wiznerowicz

August 2016

a public funded project that aims to catalogue and discover major can-cer-causing genomic alteration...

Genome Databases and Browsers for Cancer

Goyal, M

January 2019

There are at about 200 forms of cancer and its subtypes. Each of these is caused by errors in DNA th...

Cancer Genome Atlas Pan-cancer Analysis Project

Kun ZHANG
Hong WANG

April 2015

Cancer can exhibit different forms depending on the site of origin, cell types, the different forms ...

The cancer genome atlas pan-cancer analysis project

Weinstein, J.
Collisson, E.
Mills, G.
Shaw, K.
Ozenberger, B.
Ellrott, K.
Sander, C.
Stuart, J.
Chang, K.
Creighton, C.
Davis, C.
Donehower, L.
Drummond, J.
Wheeler, D.
Ally, A.
Balasundaram, M.
Birol, I.
Butterfield, Y.
Chu, A.
Chuah, E.
Chun, H.
Dhalla, N.
Guin, R.
Hirst, M.
Hirst, C.
Holt, R.
Jones, S.
Lee, D.
Li, H.
Marra, M.
Mayo, M.
Moore, R.
Mungall, A.
Robertson, A.
Schein, J.
Sipahimalani, P.
Tam, A.
Thiessen, N.
Varhol, Richard
Beroukhim, R.
Bhatt, A.
Brooks, A.
Cherniack, A.
Freeman, S.
Gabriel, S.
Helman, E.
Jung, J.
Meyerson, M.
Ojesina, A.
Pedamallu, C.
Saksena, G.
Schumacher, S.
Tabak, B.
Zack, T.
Lander, E.
Bristow, C.
Hadjipanayis, A.
Haseley, P.
Kucherlapati, R.
Lee, S.
Lee, E.
Luquette, L.
Mahadeshwar, H.
Pantazi, A.
Parfenov, M.
Park, P.
Protopopov, A.
Ren, X.
Santoso, N.
Seidman, J.
Seth, S.
Song, X.
Tang, J.
Xi, R.
Xu, A.
Yang, L.
Zeng, D.
Auman, J.
Balu, S.
Buda, E.

January 2013

The Cancer Genome Atlas (TCGA) Research Network has profiled and analyzed large numbers of human tum...

Cytogenetic resources and information Running title: Databases for cancer cytogenetics *Corresponding authors

de Braekeleer, H
Huret, Jl
Mossafa, H, L
Dessen, P

January 2017

International audienceThe main databases devoted stricto sensu to cancer cytogenetics are the "Mitel...

Pathway and network analysis of more than 2500 whole cancer genomes

Reyna, Matthew A.
Haan, David
Paczkowska, Marta
Verbeke, Lieven P.C.
Vazquez, Miguel
Kahraman, Abdullah
Pulido-Tamayo, Sergio
Barenboim, Jonathan
Wadi, Lina
Dhingra, Priyanka
Shrestha, Raunak
Getz, Gad
Lawrence, Michael S.
Pedersen, Jackob S.
Rubin, Mark A.
Wheeler, David A.
Brunak, Søren
Izarzugaza, Jose M.G.
PCAWG Drivers and Functional Interpretation Working Group
PCAWG Consortium
Deu-Pons, Jordi
Gut, Ivo Glynne
Muiños, Ferran
Mularoni, Loris
Rubio Pérez, Carlota, 1990-
Tamborero Noguera, David

January 2020

The catalog of cancer driver mutations in protein-coding genes has greatly expanded in the past deca...

Abstract

Extracted data

Database update

Abstract

Extracted data

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