Motivation: The desire to compare molecular phylogenies has stimulated the design of numerous tests. Most of these tests are formulated in a frequentist framework, and it is not known how they compare with Bayes procedures. I propose here two new Bayes tests that either compare pairs of trees (Bayes hypothesis test, BHT), or test each tree against an average of the trees included in the analysis (Bayes significance test, BST). Results: The algorithm, based on a standard Metropolis– Hastings sampler, integrates nuisance parameters out and estimates the probability of the data under each topology. These quantities are used to estimate Bayes factors for composite vs. composite hypotheses. Based on two data sets, the BHT and BST are shown to co...
In this chapter, we discuss recent advances in the field of Bayesian model testing and focus on meth...
Case-control studies of genetic polymorphisms and gene-environment interactions are reporting large ...
Abstract.—We review Bayesian approaches to model testing in general and to the assessment of topolog...
We review Bayesian approaches to model testing in general and to the assessment of topological hypot...
Summary. Bayes factors comparing two or more competing hypotheses are often estimated by constructin...
International audienceOwing to the exponential growth of genome databases, phylogenetic trees are no...
Molecular instruments are the most accurate methods in organisms ’ identification and characterizati...
Abstract.—As larger, more complex data sets are being used to infer phylogenies, accuracy of these p...
With the rapid reduction in sequencing costs of high-throughput genomic data, it has become commonpl...
With the rapid reduction in sequencing costs of high-throughput genomic data, it has become commonpl...
Abstract. Murphy and colleagues reported that the mammalian phylogeny was resolved by Bayesian phylo...
Abstract.—In this article, we review (1) statistical tests of DNA phylogenies inferred by the maximu...
<p>Maximum likelihood, Bayesian posterior probability (BPP), and significance of alternative phyloge...
We review Bayesian approaches to model testing in general and to the assessment of topological hypot...
Since their advent, supertrees have been increasingly used in large-scale evolutionary studies requi...
In this chapter, we discuss recent advances in the field of Bayesian model testing and focus on meth...
Case-control studies of genetic polymorphisms and gene-environment interactions are reporting large ...
Abstract.—We review Bayesian approaches to model testing in general and to the assessment of topolog...
We review Bayesian approaches to model testing in general and to the assessment of topological hypot...
Summary. Bayes factors comparing two or more competing hypotheses are often estimated by constructin...
International audienceOwing to the exponential growth of genome databases, phylogenetic trees are no...
Molecular instruments are the most accurate methods in organisms ’ identification and characterizati...
Abstract.—As larger, more complex data sets are being used to infer phylogenies, accuracy of these p...
With the rapid reduction in sequencing costs of high-throughput genomic data, it has become commonpl...
With the rapid reduction in sequencing costs of high-throughput genomic data, it has become commonpl...
Abstract. Murphy and colleagues reported that the mammalian phylogeny was resolved by Bayesian phylo...
Abstract.—In this article, we review (1) statistical tests of DNA phylogenies inferred by the maximu...
<p>Maximum likelihood, Bayesian posterior probability (BPP), and significance of alternative phyloge...
We review Bayesian approaches to model testing in general and to the assessment of topological hypot...
Since their advent, supertrees have been increasingly used in large-scale evolutionary studies requi...
In this chapter, we discuss recent advances in the field of Bayesian model testing and focus on meth...
Case-control studies of genetic polymorphisms and gene-environment interactions are reporting large ...
Abstract.—We review Bayesian approaches to model testing in general and to the assessment of topolog...
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