Genome Biology

GeneNoteBook, a collaborative notebook for comparative genomics

Holmer, Rens
van Velzen, Robin
Geurts, Rene
Bisseling, Ton
de Ridder, Dick
Smit, Sandra

January 2019

SUMMARY: Analysis and comparison of genomic and transcriptomic datasets have become standard procedu...

GeneDB--an annotation database for pathogens.

Logan-Klumpler, Flora J
De Silva, Nishadi
Boehme, Ulrike
Rogers, Matthew B
Velarde, Giles
McQuillan, Jacqueline A
Carver, Tim
Aslett, Martin
Olsen, Christian
Subramanian, Sandhya
Phan, Isabelle
Farris, Carol
Mitra, Siddhartha
Ramasamy, Gowthaman
Wang, Haiming
Tivey, Adrian
Jackson, Andrew
Houston, Robin
Parkhill, Julian
Holden, Matthew
Harb, Omar S
Brunk, Brian P
Myler, Peter J
Roos, David
Carrington, Mark
Smith, Deborah F
Hertz-Fowler, Christiane
Berriman, Matthew

January 2012

GeneDB (http://www.genedb.org) is a genome database for prokaryotic and eukaryotic pathogens and clo...

Genome (re-)annotation and open-source annotation pipelines

Siezen, R.J.
Hijum, S.A.F.T. van

January 2010

Contains fulltext : 88538.pdf (publisher's version ) (Open Access

Genome Biology 2007, 8:R189 doi:10.1186/gb-2007-8-9-r189

Steve W Cole
Louise C Hawkley
Jesusa M Arevalo
Caroline Y Sung
Robert M Rose

January 2007

This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully...

Genome Biology

Jian Feng
Matthew Wilkinson
Xiaochuan Liu
Immanuel Purushothaman
Ian Maze
Ningyi Shao
Pamela Kennedy
Jawook Koo
Caroline Dias
Benjamin Laitman
Victoria Stockman
Quincey Laplant
Michael Cahill
Eric J Nestler
Li Shen
Jian Feng
Matthew Wilkinson
Xiaochuan Liu
Immanuel Purushothaman
Deveroux Ferguson
Vincent Vialou
Ian Maze

January 2014

This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully...

GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists

Carmona-Sáez, Pedro
Chagoyen, Mónica
Tirado, Francisco
Carazo, José M.
Pascual-Montano, Alberto

January 2007

The complete article is available as a provisional PDF. The fully formatted PDF and HTML versions ar...

Genome Biology 2014, 15:R64 doi:10.1186/gb-2014-15-4-r64

Benjamin Vandersluis
David C Hess
Colin Pesyna
Elias W Krumholz
Tahin Syed
Corey Nislow
Olga G Troyanskaya
Chad L Myers
Amy A Caudy
David C Hess
Colin Pesyna
Elias W Krumholz
Tahin Syed
Corey Nislow
Olga G Troyanskaya

January 2013

This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully...

Genome Biology 2006, 7:R92 doi:10.1186/gb-2006-7-10-r92

Huan Wang
Nam-hai Chua
Xiu-jie Wang
Huan Wang
Nam-hai Chua
Xiu-jie Wang
Emails Of

January 2006

This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully...

Genome Biology 2013, 14:R140 doi:10.1186/gb-2013-14-12-r140

Ann S Hammonds
Christopher A Bristow
William W Fisher
Richard Weiszmann
Siqi Wu
Volker Hartenstein
Manolis Kellis
Bin Yu
Erwin Frise
Susan E Celniker
Christopher A Bristow
William W Fisher
Richard Weiszmann
Siqi Wu
Volker Hartenstein
Manolis Kellis
Bin Yu
Erwin Frise

January 2013

This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully...

A Gene Annotation Tool Based on Sequence Similarity and Biomedical Text

Daisuke Yamaguchi
Asako Koike
Yasunori Yamamoto
Toshihisa Takagi

August 2016

Recently, the numbers of prokaryotic genomes are completely sequenced and now more projects are ongo...

Genome annotation: From sequence to biology

Stein, L.

July 2001

The genome sequence of an organism is an information resource unlike any that biologists have previo...

The use of evolutionary biology concepts for genome annotation

Danchin, Etienne
Levasseur, Anthony
Rascol, Virginie Lopez
Gouret, Philippe
Pontarotti, Pierre

January 2007

International audienceThe past decade has seen the completion of numerous whole-genome sequencing pr...

This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully formatted PDF and full text (HTML) versions will be made available soon. Evolutionary Rate and Gene Expression Across Different Brain Regions Genome Biolo

Tamir Tuller
Martin Kupiec
Tamir Tuller
Martin Kupiec

January 2008

This peer-reviewed article was published immediately upon acceptance. It can be downloaded, printed ...

Bioinformatics for plant genome annotation

Fiers, M.W.E.J.

January 2006

Large amounts of genome sequence data are available and much more will become available in the near ...

Genome Biology Sample

Hannah Dueck
Mugdha Khaladkar
Tae Kyung Kim
Jennifer M. Spaethling
Chantal Francis
Sangita Suresh
Stephen Fisher
Patrick Seale
Sheryl G. Beck
Tamas Bartfai
Bernhard Kuhn
Jim Eberwine
Junhyong Kim
Mugdha Khaladkar
Tae Kyung Kim
Jennifer M. Spaethling
Chantal Francis
Sangita Suresh

January 2015

PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HT...

GeneNoteBook, a collaborative notebook for comparative genomics

Holmer, Rens
van Velzen, Robin
Geurts, Rene
Bisseling, Ton
de Ridder, Dick
Smit, Sandra

January 2019

SUMMARY: Analysis and comparison of genomic and transcriptomic datasets have become standard procedu...

GeneDB--an annotation database for pathogens.

Logan-Klumpler, Flora J
De Silva, Nishadi
Boehme, Ulrike
Rogers, Matthew B
Velarde, Giles
McQuillan, Jacqueline A
Carver, Tim
Aslett, Martin
Olsen, Christian
Subramanian, Sandhya
Phan, Isabelle
Farris, Carol
Mitra, Siddhartha
Ramasamy, Gowthaman
Wang, Haiming
Tivey, Adrian
Jackson, Andrew
Houston, Robin
Parkhill, Julian
Holden, Matthew
Harb, Omar S
Brunk, Brian P
Myler, Peter J
Roos, David
Carrington, Mark
Smith, Deborah F
Hertz-Fowler, Christiane
Berriman, Matthew

January 2012

GeneDB (http://www.genedb.org) is a genome database for prokaryotic and eukaryotic pathogens and clo...

Genome (re-)annotation and open-source annotation pipelines

Siezen, R.J.
Hijum, S.A.F.T. van

January 2010

Contains fulltext : 88538.pdf (publisher's version ) (Open Access

Genome Biology 2007, 8:R189 doi:10.1186/gb-2007-8-9-r189

Steve W Cole
Louise C Hawkley
Jesusa M Arevalo
Caroline Y Sung
Robert M Rose

January 2007

This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully...

Genome Biology

Jian Feng
Matthew Wilkinson
Xiaochuan Liu
Immanuel Purushothaman
Ian Maze
Ningyi Shao
Pamela Kennedy
Jawook Koo
Caroline Dias
Benjamin Laitman
Victoria Stockman
Quincey Laplant
Michael Cahill
Eric J Nestler
Li Shen
Jian Feng
Matthew Wilkinson
Xiaochuan Liu
Immanuel Purushothaman
Deveroux Ferguson
Vincent Vialou
Ian Maze

January 2014

This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully...

GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists

Carmona-Sáez, Pedro
Chagoyen, Mónica
Tirado, Francisco
Carazo, José M.
Pascual-Montano, Alberto

January 2007

The complete article is available as a provisional PDF. The fully formatted PDF and HTML versions ar...

Genome Biology 2014, 15:R64 doi:10.1186/gb-2014-15-4-r64

Benjamin Vandersluis
David C Hess
Colin Pesyna
Elias W Krumholz
Tahin Syed
Corey Nislow
Olga G Troyanskaya
Chad L Myers
Amy A Caudy
David C Hess
Colin Pesyna
Elias W Krumholz
Tahin Syed
Corey Nislow
Olga G Troyanskaya

January 2013

This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully...

Genome Biology 2006, 7:R92 doi:10.1186/gb-2006-7-10-r92

Huan Wang
Nam-hai Chua
Xiu-jie Wang
Huan Wang
Nam-hai Chua
Xiu-jie Wang
Emails Of

January 2006

This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully...

Genome Biology 2013, 14:R140 doi:10.1186/gb-2013-14-12-r140

Ann S Hammonds
Christopher A Bristow
William W Fisher
Richard Weiszmann
Siqi Wu
Volker Hartenstein
Manolis Kellis
Bin Yu
Erwin Frise
Susan E Celniker
Christopher A Bristow
William W Fisher
Richard Weiszmann
Siqi Wu
Volker Hartenstein
Manolis Kellis
Bin Yu
Erwin Frise

January 2013

This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully...

A Gene Annotation Tool Based on Sequence Similarity and Biomedical Text

Daisuke Yamaguchi
Asako Koike
Yasunori Yamamoto
Toshihisa Takagi

August 2016

Recently, the numbers of prokaryotic genomes are completely sequenced and now more projects are ongo...

Genome annotation: From sequence to biology

Stein, L.

July 2001

The genome sequence of an organism is an information resource unlike any that biologists have previo...

The use of evolutionary biology concepts for genome annotation

Danchin, Etienne
Levasseur, Anthony
Rascol, Virginie Lopez
Gouret, Philippe
Pontarotti, Pierre

January 2007

International audienceThe past decade has seen the completion of numerous whole-genome sequencing pr...

This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully formatted PDF and full text (HTML) versions will be made available soon. Evolutionary Rate and Gene Expression Across Different Brain Regions Genome Biolo

Tamir Tuller
Martin Kupiec
Tamir Tuller
Martin Kupiec

January 2008

This peer-reviewed article was published immediately upon acceptance. It can be downloaded, printed ...

Bioinformatics for plant genome annotation

Fiers, M.W.E.J.

January 2006

Large amounts of genome sequence data are available and much more will become available in the near ...

Genome Biology Sample

Hannah Dueck
Mugdha Khaladkar
Tae Kyung Kim
Jennifer M. Spaethling
Chantal Francis
Sangita Suresh
Stephen Fisher
Patrick Seale
Sheryl G. Beck
Tamas Bartfai
Bernhard Kuhn
Jim Eberwine
Junhyong Kim
Mugdha Khaladkar
Tae Kyung Kim
Jennifer M. Spaethling
Chantal Francis
Sangita Suresh

January 2015

PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HT...

GeneNoteBook, a collaborative notebook for comparative genomics

Holmer, Rens
van Velzen, Robin
Geurts, Rene
Bisseling, Ton
de Ridder, Dick
Smit, Sandra

January 2019

SUMMARY: Analysis and comparison of genomic and transcriptomic datasets have become standard procedu...

GeneDB--an annotation database for pathogens.

Logan-Klumpler, Flora J
De Silva, Nishadi
Boehme, Ulrike
Rogers, Matthew B
Velarde, Giles
McQuillan, Jacqueline A
Carver, Tim
Aslett, Martin
Olsen, Christian
Subramanian, Sandhya
Phan, Isabelle
Farris, Carol
Mitra, Siddhartha
Ramasamy, Gowthaman
Wang, Haiming
Tivey, Adrian
Jackson, Andrew
Houston, Robin
Parkhill, Julian
Holden, Matthew
Harb, Omar S
Brunk, Brian P
Myler, Peter J
Roos, David
Carrington, Mark
Smith, Deborah F
Hertz-Fowler, Christiane
Berriman, Matthew

January 2012

GeneDB (http://www.genedb.org) is a genome database for prokaryotic and eukaryotic pathogens and clo...

Genome (re-)annotation and open-source annotation pipelines

Siezen, R.J.
Hijum, S.A.F.T. van

January 2010

Contains fulltext : 88538.pdf (publisher's version ) (Open Access

Abstract

Extracted data

Genome Biology

Abstract

Extracted data

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